Wall clock time and date at job start Tue Mar 31 2020 19:01:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86803 * 119.99836 * 2 1
4 4 H 1.48494 * 109.47205 * 240.00186 * 3 2 1
5 5 H 1.48501 * 109.47146 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.47292 * 120.00014 * 3 2 1
7 7 C 1.38810 * 120.00140 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99923 * 180.02562 * 7 2 1
9 9 N 1.36932 * 119.99812 * 359.97438 * 7 2 1
10 10 C 1.46507 * 119.99726 * 180.02562 * 9 7 2
11 11 C 1.53002 * 109.46794 * 180.02562 * 10 9 7
12 12 H 1.08994 * 109.47387 * 54.99981 * 11 10 9
13 13 C 1.52999 * 109.47157 * 294.99685 * 11 10 9
14 14 C 1.52999 * 109.47156 * 180.02562 * 13 11 10
15 15 C 1.53004 * 109.47083 * 60.00106 * 14 13 11
16 16 C 1.52999 * 109.47038 * 299.99966 * 15 14 13
17 17 C 1.52999 * 109.47156 * 60.00078 * 16 15 14
18 18 H 1.08995 * 109.47098 * 179.97438 * 17 16 15
19 19 N 1.46498 * 109.47257 * 59.99882 * 17 16 15
20 20 C 1.34777 * 119.99828 * 84.72116 * 19 17 16
21 21 O 1.21613 * 119.99962 * 0.28066 * 20 19 17
22 22 C 1.47291 * 120.00061 * 180.27609 * 20 19 17
23 23 C 1.36572 * 125.80309 * 179.71885 * 22 20 19
24 24 C 1.40066 * 106.92380 * 179.85249 * 23 22 20
25 25 C 1.36574 * 106.92313 * 0.40804 * 24 23 22
26 26 C 1.47291 * 125.80532 * 179.78325 * 25 24 23
27 27 N 1.34778 * 120.00301 * 179.97438 * 26 25 24
28 28 O 1.21617 * 120.00061 * 359.97438 * 26 25 24
29 29 O 1.34550 * 125.80367 * 0.03296 * 22 20 19
30 30 H 0.96997 * 119.99940 * 359.97438 * 1 2 3
31 31 H 0.96998 * 120.00645 * 0.02562 * 9 7 2
32 32 H 1.08997 * 109.47449 * 59.99876 * 10 9 7
33 33 H 1.09000 * 109.46964 * 299.99499 * 10 9 7
34 34 H 1.08996 * 109.47008 * 60.00283 * 13 11 10
35 35 H 1.09003 * 109.47002 * 300.00248 * 13 11 10
36 36 H 1.08994 * 109.47074 * 300.00103 * 14 13 11
37 37 H 1.08995 * 109.47098 * 180.02562 * 14 13 11
38 38 H 1.08998 * 109.46617 * 180.02562 * 15 14 13
39 39 H 1.08994 * 109.47168 * 60.00055 * 15 14 13
40 40 H 1.09003 * 109.47002 * 300.00215 * 16 15 14
41 41 H 1.08996 * 109.47008 * 180.02562 * 16 15 14
42 42 H 0.97001 * 120.00384 * 265.00562 * 19 17 16
43 43 H 1.07993 * 126.54293 * 359.97438 * 23 22 20
44 44 H 1.07997 * 126.54094 * 180.11961 * 24 23 22
45 45 H 0.97004 * 119.99564 * 359.97438 * 27 26 25
46 46 H 0.96997 * 120.00006 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6965 -1.2125
5 1 1.2851 2.7465 0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 7 1.3256 -2.3880 -0.0005
10 6 2.0582 -3.6567 -0.0005
11 6 1.0639 -4.8196 -0.0012
12 1 0.3801 -4.7126 -0.8432
13 6 0.2687 -4.8115 1.3059
14 6 -0.7251 -5.9747 1.3055
15 6 0.0363 -7.2959 1.1800
16 6 0.8315 -7.3041 -0.1270
17 6 1.8253 -6.1408 -0.1267
18 1 2.3921 -6.1469 -1.0576
19 7 2.7445 -6.2841 1.0051
20 6 3.8412 -7.0588 0.8885
21 8 4.0705 -7.6347 -0.1577
22 6 4.7621 -7.2077 2.0283
23 6 5.8997 -7.9633 2.0429
24 6 6.4691 -7.8185 3.3144
25 6 5.6498 -6.9881 4.0246
26 6 5.8562 -6.5597 5.4187
27 7 4.9696 -5.7331 6.0080
28 8 6.8266 -6.9518 6.0381
29 8 4.6225 -6.6273 3.2342
30 1 -0.4850 0.8400 0.0004
31 1 0.3556 -2.3881 -0.0005
32 1 2.6849 -3.7145 0.8894
33 1 2.6848 -3.7145 -0.8906
34 1 -0.2734 -3.8701 1.3955
35 1 0.9526 -4.9185 2.1479
36 1 -1.4089 -5.8681 0.4635
37 1 -1.2919 -5.9686 2.2365
38 1 -0.6718 -8.1246 1.1793
39 1 0.7201 -7.4026 2.0220
40 1 0.1476 -7.1974 -0.9691
41 1 1.3735 -8.2455 -0.2166
42 1 2.5616 -5.8248 1.8396
43 1 6.2876 -8.5573 1.2287
44 1 7.3796 -8.2796 3.6675
45 1 4.1958 -5.4201 5.5138
46 1 5.1053 -5.4513 6.9261
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733078941.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:01:07
Heat of formation + Delta-G solvation = -63.513192 kcal
Electronic energy + Delta-G solvation = -29328.641937 eV
Core-core repulsion = 25219.434064 eV
Total energy + Delta-G solvation = -4109.207873 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-43.14644 -40.36452 -39.54848 -38.24036 -34.72752 -34.32701 -33.96178 -33.26528
-31.98768 -30.89844 -29.81162 -29.33633 -25.53696 -24.88744 -23.10326 -22.73820
-22.11034 -21.53077 -20.80229 -20.49371 -19.11845 -19.06083 -18.12307 -17.29287
-17.09029 -16.95128 -15.92249 -15.44935 -15.20628 -14.97032 -14.76846 -14.60667
-14.46430 -13.97934 -13.70085 -13.59651 -13.45432 -13.43233 -13.33207 -13.11261
-12.79633 -12.20561 -12.05270 -11.77058 -11.48976 -10.98128 -10.93892 -10.93112
-10.77497 -10.49943 -10.47343 -10.34533 -10.27348 -10.22085 -10.05712 -9.94934
-9.68207 -9.25841 -8.99486 -8.89122 -6.96307 -5.80740 -3.09252 0.31054
1.59495 2.01221 2.73590 2.87018 2.94309 3.15025 3.41173 3.46114
3.46743 4.28754 4.47595 4.52420 4.61352 4.76221 4.80858 4.84449
5.14333 5.16360 5.21899 5.25199 5.44761 5.50725 5.53260 5.56103
5.59675 5.66918 5.73415 5.84533 5.95578 6.04406 6.08529 6.14045
6.17479 6.19184 6.27464 6.31813 6.39229 6.44392 6.61167 6.73858
6.79393 6.83172 7.31454 7.66110 7.66386 7.89951 8.38350 9.49789
10.06736 10.41648 11.41971
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.008743 B = 0.003501 C = 0.002865
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3201.885179 B = 7995.970060 C = 9771.508029
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.934 5.934
2 C -0.012 4.012
3 Si 0.906 3.094
4 H -0.286 1.286
5 H -0.291 1.291
6 H -0.286 1.286
7 C -0.240 4.240
8 H 0.068 0.932
9 N -0.730 5.730
10 C 0.159 3.841
11 C -0.102 4.102
12 H 0.089 0.911
13 C -0.111 4.111
14 C -0.121 4.121
15 C -0.117 4.117
16 C -0.129 4.129
17 C 0.153 3.847
18 H 0.093 0.907
19 N -0.699 5.699
20 C 0.599 3.401
21 O -0.515 6.515
22 C -0.031 4.031
23 C -0.138 4.138
24 C -0.127 4.127
25 C -0.055 4.055
26 C 0.611 3.389
27 N -0.839 5.839
28 O -0.520 6.520
29 O -0.152 6.152
30 H 0.256 0.744
31 H 0.384 0.616
32 H 0.017 0.983
33 H 0.018 0.982
34 H 0.080 0.920
35 H 0.054 0.946
36 H 0.063 0.937
37 H 0.059 0.941
38 H 0.058 0.942
39 H 0.057 0.943
40 H 0.075 0.925
41 H 0.065 0.935
42 H 0.406 0.594
43 H 0.170 0.830
44 H 0.169 0.831
45 H 0.410 0.590
46 H 0.412 0.588
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.089 -17.900 8.115 20.074
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.582 5.582
2 C -0.208 4.208
3 Si 0.737 3.263
4 H -0.213 1.213
5 H -0.217 1.217
6 H -0.213 1.213
7 C -0.372 4.372
8 H 0.086 0.914
9 N -0.375 5.375
10 C 0.031 3.969
11 C -0.121 4.121
12 H 0.107 0.893
13 C -0.149 4.149
14 C -0.159 4.159
15 C -0.154 4.154
16 C -0.168 4.168
17 C 0.049 3.951
18 H 0.111 0.889
19 N -0.350 5.350
20 C 0.384 3.616
21 O -0.393 6.393
22 C -0.085 4.085
23 C -0.159 4.159
24 C -0.147 4.147
25 C -0.109 4.109
26 C 0.395 3.605
27 N -0.402 5.402
28 O -0.397 6.397
29 O -0.047 6.047
30 H 0.065 0.935
31 H 0.218 0.782
32 H 0.035 0.965
33 H 0.036 0.964
34 H 0.099 0.901
35 H 0.072 0.928
36 H 0.082 0.918
37 H 0.078 0.922
38 H 0.077 0.923
39 H 0.076 0.924
40 H 0.094 0.906
41 H 0.084 0.916
42 H 0.243 0.757
43 H 0.187 0.813
44 H 0.186 0.814
45 H 0.240 0.760
46 H 0.244 0.756
Dipole moment (debyes) X Y Z Total
from point charges 4.765 -18.293 7.692 20.409
hybrid contribution -0.103 1.445 0.499 1.532
sum 4.662 -16.848 8.191 19.305
Atomic orbital electron populations
1.69639 1.05076 1.25786 1.57719 1.24711 0.95497 0.97615 1.02957
0.86289 0.78553 0.83592 0.77877 1.21256 1.21659 1.21320 1.19166
0.90972 0.84200 1.42817 0.91376 1.42342 1.05799 0.99836 1.89489
1.20653 0.92970 0.85383 0.97860 1.21646 0.97866 0.93142 0.99464
0.89286 1.21542 0.97684 0.99133 0.96506 1.21589 0.98059 0.94401
1.01810 1.21505 0.98686 0.97668 0.97579 1.21921 0.97934 0.98347
0.98560 1.21109 0.89684 0.95037 0.89278 0.88913 1.46067 1.23271
1.47887 1.17755 1.16650 0.80198 0.80059 0.84736 1.90874 1.74130
1.47650 1.26596 1.22620 1.00024 1.00757 0.85091 1.21985 0.94353
1.00926 0.98600 1.21991 1.01067 0.98763 0.92915 1.22277 0.90958
1.04600 0.93079 1.16616 0.82669 0.78533 0.82724 1.43708 1.27942
1.50069 1.18513 1.90926 1.29460 1.56588 1.62717 1.84044 1.42106
1.57567 1.21015 0.93458 0.78182 0.96500 0.96371 0.90099 0.92764
0.91778 0.92194 0.92303 0.92375 0.90628 0.91587 0.75688 0.81255
0.81354 0.75994 0.75635
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16
2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16
3 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16
4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
7 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16
8 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16
9 N -0.73 -17.52 5.33 -59.91 -0.32 -17.84 16
10 C 0.16 2.99 5.42 -4.04 -0.02 2.97 16
11 C -0.10 -1.46 2.02 -90.62 -0.18 -1.64 16
12 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16
13 C -0.11 -1.47 4.90 -26.73 -0.13 -1.60 16
14 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16
15 C -0.12 -1.15 5.77 -26.73 -0.15 -1.31 16
16 C -0.13 -1.39 5.60 -26.73 -0.15 -1.54 16
17 C 0.15 1.91 2.23 -67.93 -0.15 1.76 16
18 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16
19 N -0.70 -8.30 3.61 -54.93 -0.20 -8.50 16
20 C 0.60 7.74 7.77 -12.58 -0.10 7.64 16
21 O -0.52 -7.93 16.53 5.27 0.09 -7.84 16
22 C -0.03 -0.35 7.14 -36.50 -0.26 -0.61 16
23 C -0.14 -1.43 10.60 -39.50 -0.42 -1.85 16
24 C -0.13 -1.25 10.60 -39.50 -0.42 -1.67 16
25 C -0.06 -0.58 7.14 -36.50 -0.26 -0.84 16
26 C 0.61 6.26 8.08 -12.58 -0.10 6.16 16
27 N -0.84 -5.69 8.87 30.40 0.27 -5.42 16
28 O -0.52 -6.87 17.70 5.26 0.09 -6.78 16
29 O -0.15 -1.59 10.14 4.35 0.04 -1.55 16
30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16
31 H 0.38 9.60 6.85 -40.82 -0.28 9.33 16
32 H 0.02 0.32 7.61 -51.93 -0.40 -0.07 16
33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
34 H 0.08 1.30 7.18 -51.93 -0.37 0.92 16
35 H 0.05 0.67 6.50 -51.93 -0.34 0.33 16
36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.06 0.57 7.60 -51.93 -0.39 0.18 16
40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
42 H 0.41 4.47 6.43 -40.82 -0.26 4.20 16
43 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16
44 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16
45 H 0.41 2.19 8.59 -40.82 -0.35 1.84 16
46 H 0.41 2.09 8.93 -40.82 -0.36 1.72 16
LS Contribution 381.29 15.07 5.75 5.75
Total: -1.00 -32.97 381.29 -7.83 -40.80
By element:
Atomic # 1 Polarization: 18.69 SS G_CDS: -6.50 Total: 12.19 kcal
Atomic # 6 Polarization: 1.62 SS G_CDS: -2.75 Total: -1.13 kcal
Atomic # 7 Polarization: -58.95 SS G_CDS: 0.48 Total: -58.48 kcal
Atomic # 8 Polarization: -16.39 SS G_CDS: 0.22 Total: -16.16 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -32.97 -7.83 -40.80 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733078941.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.714 kcal
(2) G-P(sol) polarization free energy of solvation -32.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds