Wall clock time and date at job start Tue Mar 31 2020 19:01:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31621 * 1
3 3 Si 1.86803 * 119.99836 * 2 1
4 4 H 1.48494 * 109.47205 * 240.00186 * 3 2 1
5 5 H 1.48501 * 109.47146 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.47292 * 120.00014 * 3 2 1
7 7 C 1.38810 * 120.00140 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99923 * 180.02562 * 7 2 1
9 9 N 1.36932 * 119.99812 * 359.97438 * 7 2 1
10 10 C 1.46507 * 119.99726 * 180.02562 * 9 7 2
11 11 C 1.53002 * 109.46794 * 180.02562 * 10 9 7
12 12 H 1.08994 * 109.47387 * 54.99981 * 11 10 9
13 13 C 1.52999 * 109.47157 * 294.99685 * 11 10 9
14 14 C 1.52999 * 109.47156 * 180.02562 * 13 11 10
15 15 C 1.53004 * 109.47083 * 60.00106 * 14 13 11
16 16 C 1.52999 * 109.47038 * 299.99966 * 15 14 13
17 17 C 1.52999 * 109.47156 * 60.00078 * 16 15 14
18 18 H 1.08995 * 109.47098 * 179.97438 * 17 16 15
19 19 N 1.46498 * 109.47257 * 59.99882 * 17 16 15
20 20 C 1.34777 * 119.99828 * 84.72116 * 19 17 16
21 21 O 1.21613 * 119.99962 * 0.28066 * 20 19 17
22 22 C 1.47291 * 120.00061 * 180.27609 * 20 19 17
23 23 C 1.36572 * 125.80309 * 179.71885 * 22 20 19
24 24 C 1.40066 * 106.92380 * 179.85249 * 23 22 20
25 25 C 1.36574 * 106.92313 * 0.40804 * 24 23 22
26 26 C 1.47291 * 125.80532 * 179.78325 * 25 24 23
27 27 N 1.34778 * 120.00301 * 179.97438 * 26 25 24
28 28 O 1.21617 * 120.00061 * 359.97438 * 26 25 24
29 29 O 1.34550 * 125.80367 * 0.03296 * 22 20 19
30 30 H 0.96997 * 119.99940 * 359.97438 * 1 2 3
31 31 H 0.96998 * 120.00645 * 0.02562 * 9 7 2
32 32 H 1.08997 * 109.47449 * 59.99876 * 10 9 7
33 33 H 1.09000 * 109.46964 * 299.99499 * 10 9 7
34 34 H 1.08996 * 109.47008 * 60.00283 * 13 11 10
35 35 H 1.09003 * 109.47002 * 300.00248 * 13 11 10
36 36 H 1.08994 * 109.47074 * 300.00103 * 14 13 11
37 37 H 1.08995 * 109.47098 * 180.02562 * 14 13 11
38 38 H 1.08998 * 109.46617 * 180.02562 * 15 14 13
39 39 H 1.08994 * 109.47168 * 60.00055 * 15 14 13
40 40 H 1.09003 * 109.47002 * 300.00215 * 16 15 14
41 41 H 1.08996 * 109.47008 * 180.02562 * 16 15 14
42 42 H 0.97001 * 120.00384 * 265.00562 * 19 17 16
43 43 H 1.07993 * 126.54293 * 359.97438 * 23 22 20
44 44 H 1.07997 * 126.54094 * 180.11961 * 24 23 22
45 45 H 0.97004 * 119.99564 * 359.97438 * 27 26 25
46 46 H 0.96997 * 120.00006 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1039 1.6965 -1.2125
5 1 1.2851 2.7465 0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0001
9 7 1.3256 -2.3880 -0.0005
10 6 2.0582 -3.6567 -0.0005
11 6 1.0639 -4.8196 -0.0012
12 1 0.3801 -4.7126 -0.8432
13 6 0.2687 -4.8115 1.3059
14 6 -0.7251 -5.9747 1.3055
15 6 0.0363 -7.2959 1.1800
16 6 0.8315 -7.3041 -0.1270
17 6 1.8253 -6.1408 -0.1267
18 1 2.3921 -6.1469 -1.0576
19 7 2.7445 -6.2841 1.0051
20 6 3.8412 -7.0588 0.8885
21 8 4.0705 -7.6347 -0.1577
22 6 4.7621 -7.2077 2.0283
23 6 5.8997 -7.9633 2.0429
24 6 6.4691 -7.8185 3.3144
25 6 5.6498 -6.9881 4.0246
26 6 5.8562 -6.5597 5.4187
27 7 4.9696 -5.7331 6.0080
28 8 6.8266 -6.9518 6.0381
29 8 4.6225 -6.6273 3.2342
30 1 -0.4850 0.8400 0.0004
31 1 0.3556 -2.3881 -0.0005
32 1 2.6849 -3.7145 0.8894
33 1 2.6848 -3.7145 -0.8906
34 1 -0.2734 -3.8701 1.3955
35 1 0.9526 -4.9185 2.1479
36 1 -1.4089 -5.8681 0.4635
37 1 -1.2919 -5.9686 2.2365
38 1 -0.6718 -8.1246 1.1793
39 1 0.7201 -7.4026 2.0220
40 1 0.1476 -7.1974 -0.9691
41 1 1.3735 -8.2455 -0.2166
42 1 2.5616 -5.8248 1.8396
43 1 6.2876 -8.5573 1.2287
44 1 7.3796 -8.2796 3.6675
45 1 4.1958 -5.4201 5.5138
46 1 5.1053 -5.4513 6.9261
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733078941.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:01:06
Heat of formation + Delta-G solvation = -87.533066 kcal
Electronic energy + Delta-G solvation = -29329.683517 eV
Core-core repulsion = 25219.434064 eV
Total energy + Delta-G solvation = -4110.249453 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.97269 -41.40937 -40.37755 -39.33307 -36.46583 -35.09487 -34.90293 -34.10879
-33.71057 -31.80991 -31.23624 -30.44376 -27.04143 -25.91942 -24.68373 -23.72266
-23.05786 -22.43732 -21.96474 -21.44482 -20.08334 -19.99871 -19.24890 -18.80801
-17.97689 -17.80088 -16.97319 -16.75558 -16.36037 -16.17607 -15.87861 -15.61081
-15.46067 -15.28216 -15.07719 -14.88999 -14.59238 -14.40794 -14.27698 -14.21541
-14.02621 -13.43233 -13.13011 -12.97620 -12.87426 -12.70861 -12.60230 -12.15116
-11.93074 -11.86503 -11.84168 -11.49947 -11.36699 -11.27614 -11.21074 -11.02101
-10.92795 -10.84985 -10.24402 -9.88373 -8.98156 -7.94880 -5.22763 -0.54911
0.75841 1.14802 1.47352 1.49214 1.55477 1.93457 1.94481 1.99358
2.39433 2.55686 3.38594 3.44550 3.59860 3.69236 3.78281 3.83707
3.86224 4.09410 4.23630 4.34065 4.37940 4.42121 4.48492 4.49205
4.58237 4.65421 4.72611 4.73608 4.91064 5.01491 5.06475 5.08718
5.17135 5.27431 5.29459 5.31797 5.35934 5.44262 5.48120 5.52939
5.58728 5.68547 6.15496 6.27405 6.34170 6.90651 6.99831 7.34941
8.10410 8.34878 9.28052
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.008743 B = 0.003501 C = 0.002865
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3201.885179 B = 7995.970060 C = 9771.508029
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.965 5.965
2 C -0.068 4.068
3 Si 0.968 3.032
4 H -0.282 1.282
5 H -0.294 1.294
6 H -0.278 1.278
7 C -0.247 4.247
8 H 0.069 0.931
9 N -0.739 5.739
10 C 0.160 3.840
11 C -0.089 4.089
12 H 0.083 0.917
13 C -0.106 4.106
14 C -0.114 4.114
15 C -0.110 4.110
16 C -0.123 4.123
17 C 0.160 3.840
18 H 0.078 0.922
19 N -0.693 5.693
20 C 0.602 3.398
21 O -0.544 6.544
22 C -0.049 4.049
23 C -0.130 4.130
24 C -0.128 4.128
25 C -0.059 4.059
26 C 0.610 3.390
27 N -0.819 5.819
28 O -0.553 6.553
29 O -0.149 6.149
30 H 0.252 0.748
31 H 0.377 0.623
32 H 0.022 0.978
33 H 0.006 0.994
34 H 0.050 0.950
35 H 0.063 0.937
36 H 0.063 0.937
37 H 0.072 0.928
38 H 0.076 0.924
39 H 0.061 0.939
40 H 0.083 0.917
41 H 0.065 0.935
42 H 0.412 0.588
43 H 0.182 0.818
44 H 0.184 0.816
45 H 0.420 0.580
46 H 0.422 0.578
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.379 -18.814 9.025 21.321
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.616 5.616
2 C -0.261 4.261
3 Si 0.797 3.203
4 H -0.208 1.208
5 H -0.220 1.220
6 H -0.204 1.204
7 C -0.379 4.379
8 H 0.087 0.913
9 N -0.382 5.382
10 C 0.033 3.967
11 C -0.108 4.108
12 H 0.101 0.899
13 C -0.144 4.144
14 C -0.152 4.152
15 C -0.148 4.148
16 C -0.162 4.162
17 C 0.055 3.945
18 H 0.096 0.904
19 N -0.344 5.344
20 C 0.388 3.612
21 O -0.423 6.423
22 C -0.103 4.103
23 C -0.151 4.151
24 C -0.148 4.148
25 C -0.113 4.113
26 C 0.394 3.606
27 N -0.383 5.383
28 O -0.433 6.433
29 O -0.044 6.044
30 H 0.060 0.940
31 H 0.210 0.790
32 H 0.040 0.960
33 H 0.024 0.976
34 H 0.068 0.932
35 H 0.082 0.918
36 H 0.082 0.918
37 H 0.090 0.910
38 H 0.095 0.905
39 H 0.080 0.920
40 H 0.102 0.898
41 H 0.083 0.917
42 H 0.249 0.751
43 H 0.199 0.801
44 H 0.202 0.798
45 H 0.251 0.749
46 H 0.256 0.744
Dipole moment (debyes) X Y Z Total
from point charges 5.044 -19.206 8.623 21.649
hybrid contribution -0.157 1.714 0.231 1.736
sum 4.886 -17.492 8.854 20.205
Atomic orbital electron populations
1.69784 1.06393 1.26118 1.59295 1.25455 0.96316 1.00719 1.03613
0.85306 0.77314 0.79621 0.78081 1.20807 1.22001 1.20414 1.19527
0.91283 0.85554 1.41509 0.91269 1.42500 1.05643 1.00804 1.89289
1.20767 0.93664 0.85070 0.97172 1.21473 0.96929 0.92269 1.00108
0.89873 1.21464 0.98019 0.98888 0.95982 1.21533 0.97451 0.93669
1.02509 1.21467 0.98811 0.97525 0.96957 1.21876 0.97562 0.97088
0.99634 1.20970 0.89850 0.94681 0.88951 0.90376 1.46001 1.23035
1.47673 1.17695 1.16738 0.80193 0.79579 0.84737 1.90857 1.74816
1.48868 1.27791 1.22408 1.00515 1.02137 0.85249 1.22216 0.93671
1.00118 0.99050 1.22236 1.01491 0.98497 0.92567 1.22455 0.90962
1.04579 0.93270 1.16624 0.82669 0.78754 0.82543 1.43606 1.27261
1.48489 1.18967 1.90913 1.30949 1.58120 1.63361 1.84019 1.42176
1.57546 1.20689 0.93956 0.79037 0.96018 0.97614 0.93151 0.91804
0.91821 0.90957 0.90528 0.91999 0.89843 0.91676 0.75070 0.80060
0.79818 0.74915 0.74443
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.97 -57.45 13.06 21.65 0.28 -57.17 16
2 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16
3 Si 0.97 45.37 29.55 68.60 2.03 47.40 16
4 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16
5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16
6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
7 C -0.25 -13.52 9.99 84.03 0.84 -12.68 16
8 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16
9 N -0.74 -35.94 5.33 -343.45 -1.83 -37.77 16
10 C 0.16 6.04 5.42 86.38 0.47 6.51 16
11 C -0.09 -2.51 2.02 -10.79 -0.02 -2.53 16
12 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16
13 C -0.11 -2.71 4.90 30.59 0.15 -2.56 16
14 C -0.11 -2.24 5.92 30.60 0.18 -2.06 16
15 C -0.11 -1.89 5.77 30.60 0.18 -1.71 16
16 C -0.12 -2.43 5.60 30.59 0.17 -2.26 16
17 C 0.16 3.87 2.23 44.99 0.10 3.97 16
18 H 0.08 2.16 7.58 -2.39 -0.02 2.14 16
19 N -0.69 -15.75 3.61 -445.94 -1.61 -17.36 16
20 C 0.60 15.03 7.77 86.62 0.67 15.70 16
21 O -0.54 -16.45 16.53 -4.07 -0.07 -16.51 16
22 C -0.05 -1.07 7.14 24.26 0.17 -0.90 16
23 C -0.13 -2.50 10.60 22.32 0.24 -2.27 16
24 C -0.13 -2.32 10.60 22.32 0.24 -2.08 16
25 C -0.06 -1.14 7.14 24.26 0.17 -0.96 16
26 C 0.61 11.67 8.08 86.62 0.70 12.37 16
27 N -0.82 -9.66 8.87 -175.98 -1.56 -11.22 16
28 O -0.55 -14.10 17.70 -4.09 -0.07 -14.17 16
29 O -0.15 -2.90 10.14 -7.34 -0.07 -2.98 16
30 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16
31 H 0.38 19.27 6.85 -92.71 -0.63 18.64 16
32 H 0.02 0.81 7.61 -2.39 -0.02 0.79 16
33 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16
34 H 0.05 1.62 7.18 -2.39 -0.02 1.61 16
35 H 0.06 1.49 6.50 -2.39 -0.02 1.47 16
36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16
38 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
39 H 0.06 1.04 7.60 -2.39 -0.02 1.02 16
40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
41 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16
42 H 0.41 8.48 6.43 -92.71 -0.60 7.89 16
43 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16
44 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16
45 H 0.42 3.63 8.59 -92.71 -0.80 2.83 16
46 H 0.42 3.51 8.93 -92.71 -0.83 2.68 16
Total: -1.00 -70.48 381.29 0.02 -70.46
By element:
Atomic # 1 Polarization: 35.96 SS G_CDS: -1.80 Total: 34.16 kcal
Atomic # 6 Polarization: 0.44 SS G_CDS: 4.72 Total: 5.16 kcal
Atomic # 7 Polarization: -118.81 SS G_CDS: -4.72 Total: -123.53 kcal
Atomic # 8 Polarization: -33.45 SS G_CDS: -0.21 Total: -33.66 kcal
Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal
Total: -70.48 0.02 -70.46 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733078941.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.070 kcal
(2) G-P(sol) polarization free energy of solvation -70.483 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.553 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.463 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.533 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds