Wall clock time and date at job start Tue Mar 31 2020 19:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48493 * 109.47057 * 269.99521 * 3 2 1 5 5 H 1.48501 * 109.47031 * 29.99829 * 3 2 1 6 6 H 1.48507 * 109.47044 * 149.99537 * 3 2 1 7 7 C 1.38818 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99648 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99930 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47345 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47063 * 54.99696 * 11 10 9 13 13 C 1.53001 * 109.46637 * 294.99550 * 11 10 9 14 14 C 1.53002 * 109.46963 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 11 16 16 C 1.53006 * 109.47445 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.47233 * 175.00068 * 11 10 9 18 18 H 1.09002 * 109.47398 * 59.99826 * 17 11 10 19 19 N 1.46499 * 109.46840 * 299.99500 * 17 11 10 20 20 C 1.34778 * 119.99771 * 155.00060 * 19 17 11 21 21 O 1.21612 * 120.00049 * 0.02562 * 20 19 17 22 22 C 1.47287 * 119.99912 * 180.02562 * 20 19 17 23 23 C 1.36571 * 125.80581 * 179.71972 * 22 20 19 24 24 C 1.40063 * 106.92640 * 179.84724 * 23 22 20 25 25 C 1.36567 * 106.92662 * 0.40974 * 24 23 22 26 26 C 1.47290 * 125.80854 * 179.77631 * 25 24 23 27 27 N 1.34772 * 120.00384 * 179.97438 * 26 25 24 28 28 O 1.21614 * 119.99678 * 359.97438 * 26 25 24 29 29 O 1.34551 * 108.38779 * 359.74399 * 25 24 23 30 30 H 0.97000 * 120.00234 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00320 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.47453 * 59.99741 * 10 9 7 33 33 H 1.09008 * 109.47020 * 299.99767 * 10 9 7 34 34 H 1.09000 * 109.47437 * 60.00474 * 13 11 10 35 35 H 1.09002 * 109.47508 * 299.99876 * 13 11 10 36 36 H 1.09002 * 109.47067 * 300.00341 * 14 13 11 37 37 H 1.09000 * 109.47312 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47497 * 59.99850 * 15 14 13 40 40 H 1.09002 * 109.46589 * 300.00331 * 16 15 14 41 41 H 1.08996 * 109.47165 * 179.97438 * 16 15 14 42 42 H 0.96998 * 120.00630 * 335.00662 * 19 17 11 43 43 H 1.08001 * 126.54046 * 359.97438 * 23 22 20 44 44 H 1.08007 * 126.53932 * 180.11472 * 24 23 22 45 45 H 0.97002 * 119.99894 * 0.02562 * 27 26 25 46 46 H 0.97001 * 120.00682 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.3799 -4.7134 -0.8400 13 6 0.2686 -4.8103 1.3092 14 6 -0.7261 -5.9729 1.3094 15 6 0.0342 -7.2946 1.1845 16 6 0.8295 -7.3041 -0.1226 17 6 1.8246 -6.1413 -0.1225 18 1 2.5084 -6.2476 0.7197 19 7 2.5860 -6.1503 -1.3740 20 6 3.6856 -6.9211 -1.4883 21 8 4.0455 -7.6095 -0.5526 22 6 4.4514 -6.9297 -2.7464 23 6 5.5809 -7.6581 -2.9892 24 6 5.9758 -7.3724 -4.3023 25 6 5.0758 -6.4749 -4.8019 26 6 5.1022 -5.8893 -6.1531 27 7 4.1505 -5.0107 -6.5255 28 8 5.9828 -6.1987 -6.9328 29 8 4.1606 -6.2171 -3.8499 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6840 -3.7142 0.8922 33 1 2.6853 -3.7149 -0.8879 34 1 -0.2736 -3.8689 1.3980 35 1 0.9524 -4.9167 2.1513 36 1 -1.4099 -5.8661 0.4673 37 1 -1.2930 -5.9659 2.2404 38 1 -0.6744 -8.1229 1.1842 39 1 0.7181 -7.4015 2.0266 40 1 0.1456 -7.1973 -0.9646 41 1 1.3715 -8.2456 -0.2113 42 1 2.2988 -5.6014 -2.1205 43 1 6.0743 -8.3282 -2.3008 44 1 6.8319 -7.7802 -4.8195 45 1 3.4483 -4.7637 -5.9035 46 1 4.1675 -4.6253 -7.4155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733078943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:09 Heat of formation + Delta-G solvation = -66.595501 kcal Electronic energy + Delta-G solvation = -28990.985178 eV Core-core repulsion = 24881.643646 eV Total energy + Delta-G solvation = -4109.341532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.13376 -40.18259 -39.51794 -38.24882 -34.68528 -34.47460 -34.23616 -33.30944 -31.95891 -30.85644 -29.70093 -29.13816 -25.52217 -24.87919 -23.15409 -22.76839 -21.86325 -21.19211 -20.70878 -20.45767 -19.93801 -18.91014 -17.95170 -17.29746 -17.08114 -16.93080 -16.30992 -15.22130 -15.17611 -14.87191 -14.69116 -14.54104 -14.32196 -14.04813 -13.80961 -13.57871 -13.45393 -13.41726 -13.32653 -13.09050 -12.74541 -12.49841 -11.91019 -11.60836 -11.20492 -10.98740 -10.93171 -10.92257 -10.77553 -10.63133 -10.46286 -10.32946 -10.22111 -10.19746 -10.09327 -9.99721 -9.70703 -9.24630 -8.99285 -8.89404 -6.96556 -5.81370 -3.09772 0.32011 1.60202 2.02227 2.75227 2.85990 2.93899 3.15450 3.39954 3.46047 3.47302 4.28896 4.48540 4.51805 4.61370 4.74491 4.83585 4.98359 5.15279 5.17646 5.22654 5.28561 5.45988 5.49197 5.53402 5.56216 5.59830 5.66875 5.82214 5.85445 6.01111 6.05376 6.11888 6.14911 6.18672 6.22600 6.30212 6.34219 6.39960 6.50455 6.63094 6.71562 6.83059 6.85646 7.30891 7.66322 7.68476 7.88915 8.37690 9.49266 10.06255 10.41206 11.41394 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007638 B = 0.003698 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3664.793972 B = 7570.101689 C =10388.969479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.730 5.730 10 C 0.158 3.842 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.107 4.107 14 C -0.122 4.122 15 C -0.115 4.115 16 C -0.127 4.127 17 C 0.152 3.848 18 H 0.093 0.907 19 N -0.704 5.704 20 C 0.600 3.400 21 O -0.515 6.515 22 C -0.031 4.031 23 C -0.138 4.138 24 C -0.128 4.128 25 C -0.054 4.054 26 C 0.611 3.389 27 N -0.839 5.839 28 O -0.520 6.520 29 O -0.151 6.151 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.408 0.592 43 H 0.170 0.830 44 H 0.169 0.831 45 H 0.411 0.589 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 -17.052 -7.047 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.030 3.970 11 C -0.119 4.119 12 H 0.095 0.905 13 C -0.145 4.145 14 C -0.160 4.160 15 C -0.153 4.153 16 C -0.165 4.165 17 C 0.048 3.952 18 H 0.111 0.889 19 N -0.353 5.353 20 C 0.385 3.615 21 O -0.392 6.392 22 C -0.086 4.086 23 C -0.158 4.158 24 C -0.148 4.148 25 C -0.108 4.108 26 C 0.394 3.606 27 N -0.402 5.402 28 O -0.397 6.397 29 O -0.046 6.046 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.243 0.757 43 H 0.187 0.813 44 H 0.187 0.813 45 H 0.241 0.759 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.883 -17.493 -6.758 19.151 hybrid contribution -0.172 1.514 -0.463 1.592 sum 3.711 -15.980 -7.221 17.924 Atomic orbital electron populations 1.69646 1.05075 1.25661 1.57804 1.24708 0.95492 0.97606 1.02987 0.86219 0.78732 0.83913 0.77514 1.21757 1.21736 1.20773 1.19213 0.91000 0.84181 1.42671 0.91327 1.42348 1.05798 0.99835 1.89482 1.20675 0.93010 0.85393 0.97927 1.21607 0.97750 0.93122 0.99458 0.90545 1.21496 0.97659 0.98959 0.96358 1.21606 0.98087 0.94472 1.01794 1.21487 0.98788 0.97755 0.97232 1.21918 0.97820 0.98227 0.98579 1.21170 0.92782 0.95397 0.85832 0.88945 1.46045 1.26619 1.44782 1.17850 1.16640 0.80214 0.80663 0.83994 1.90874 1.68819 1.42453 1.37058 1.22596 0.99712 0.98681 0.87575 1.21984 0.95620 1.01494 0.96733 1.21988 1.00498 0.97714 0.94602 1.22286 0.93614 1.04182 0.90731 1.16612 0.81896 0.78712 0.83330 1.43711 1.30187 1.46170 1.20126 1.90923 1.36327 1.61488 1.50994 1.84050 1.45592 1.54790 1.20210 0.93514 0.78194 0.96310 0.96450 0.90108 0.91929 0.91983 0.91989 0.92029 0.91781 0.91714 0.91658 0.75702 0.81256 0.81345 0.75943 0.75627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 16.99 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.48 5.33 -59.91 -0.32 -17.80 16 10 C 0.16 2.98 5.56 -4.04 -0.02 2.95 16 11 C -0.10 -1.45 1.80 -90.62 -0.16 -1.61 16 12 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.11 -1.52 5.08 -26.73 -0.14 -1.65 16 14 C -0.12 -1.40 5.92 -26.73 -0.16 -1.55 16 15 C -0.11 -1.19 5.92 -26.73 -0.16 -1.35 16 16 C -0.13 -1.40 5.50 -26.70 -0.15 -1.55 16 17 C 0.15 1.94 1.90 -67.90 -0.13 1.81 16 18 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 19 N -0.70 -8.51 4.30 -54.90 -0.24 -8.75 16 20 C 0.60 7.86 7.77 -12.58 -0.10 7.76 16 21 O -0.51 -7.99 16.52 5.27 0.09 -7.90 16 22 C -0.03 -0.37 7.14 -36.51 -0.26 -0.63 16 23 C -0.14 -1.44 10.60 -39.50 -0.42 -1.86 16 24 C -0.13 -1.28 10.60 -39.50 -0.42 -1.70 16 25 C -0.05 -0.58 7.14 -36.51 -0.26 -0.84 16 26 C 0.61 6.42 8.08 -12.58 -0.10 6.32 16 27 N -0.84 -5.98 8.87 30.40 0.27 -5.71 16 28 O -0.52 -6.99 17.70 5.26 0.09 -6.90 16 29 O -0.15 -1.62 10.14 4.35 0.04 -1.58 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.38 9.59 6.85 -40.82 -0.28 9.31 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.33 7.31 -51.92 -0.38 -0.05 16 34 H 0.08 1.35 7.18 -51.93 -0.37 0.98 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.41 4.48 8.15 -40.82 -0.33 4.15 16 43 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 45 H 0.41 2.37 8.59 -40.82 -0.35 2.02 16 46 H 0.41 2.23 8.93 -40.82 -0.36 1.87 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -32.95 385.41 -7.94 -40.89 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -6.67 Total: 12.57 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -2.72 Total: -0.99 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.44 Total: -58.89 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.22 Total: -16.38 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.95 -7.94 -40.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733078943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.705 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds