Wall clock time and date at job start Tue Mar 31 2020 19:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48493 * 109.47057 * 269.99521 * 3 2 1 5 5 H 1.48501 * 109.47031 * 29.99829 * 3 2 1 6 6 H 1.48507 * 109.47044 * 149.99537 * 3 2 1 7 7 C 1.38818 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99648 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99930 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47345 * 179.97438 * 10 9 7 12 12 H 1.08992 * 109.47063 * 54.99696 * 11 10 9 13 13 C 1.53001 * 109.46637 * 294.99550 * 11 10 9 14 14 C 1.53002 * 109.46963 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 11 16 16 C 1.53006 * 109.47445 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.47233 * 175.00068 * 11 10 9 18 18 H 1.09002 * 109.47398 * 59.99826 * 17 11 10 19 19 N 1.46499 * 109.46840 * 299.99500 * 17 11 10 20 20 C 1.34778 * 119.99771 * 155.00060 * 19 17 11 21 21 O 1.21612 * 120.00049 * 0.02562 * 20 19 17 22 22 C 1.47287 * 119.99912 * 180.02562 * 20 19 17 23 23 C 1.36571 * 125.80581 * 179.71972 * 22 20 19 24 24 C 1.40063 * 106.92640 * 179.84724 * 23 22 20 25 25 C 1.36567 * 106.92662 * 0.40974 * 24 23 22 26 26 C 1.47290 * 125.80854 * 179.77631 * 25 24 23 27 27 N 1.34772 * 120.00384 * 179.97438 * 26 25 24 28 28 O 1.21614 * 119.99678 * 359.97438 * 26 25 24 29 29 O 1.34551 * 108.38779 * 359.74399 * 25 24 23 30 30 H 0.97000 * 120.00234 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00320 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.47453 * 59.99741 * 10 9 7 33 33 H 1.09008 * 109.47020 * 299.99767 * 10 9 7 34 34 H 1.09000 * 109.47437 * 60.00474 * 13 11 10 35 35 H 1.09002 * 109.47508 * 299.99876 * 13 11 10 36 36 H 1.09002 * 109.47067 * 300.00341 * 14 13 11 37 37 H 1.09000 * 109.47312 * 180.02562 * 14 13 11 38 38 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47497 * 59.99850 * 15 14 13 40 40 H 1.09002 * 109.46589 * 300.00331 * 16 15 14 41 41 H 1.08996 * 109.47165 * 179.97438 * 16 15 14 42 42 H 0.96998 * 120.00630 * 335.00662 * 19 17 11 43 43 H 1.08001 * 126.54046 * 359.97438 * 23 22 20 44 44 H 1.08007 * 126.53932 * 180.11472 * 24 23 22 45 45 H 0.97002 * 119.99894 * 0.02562 * 27 26 25 46 46 H 0.97001 * 120.00682 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0637 -4.8197 0.0021 12 1 0.3799 -4.7134 -0.8400 13 6 0.2686 -4.8103 1.3092 14 6 -0.7261 -5.9729 1.3094 15 6 0.0342 -7.2946 1.1845 16 6 0.8295 -7.3041 -0.1226 17 6 1.8246 -6.1413 -0.1225 18 1 2.5084 -6.2476 0.7197 19 7 2.5860 -6.1503 -1.3740 20 6 3.6856 -6.9211 -1.4883 21 8 4.0455 -7.6095 -0.5526 22 6 4.4514 -6.9297 -2.7464 23 6 5.5809 -7.6581 -2.9892 24 6 5.9758 -7.3724 -4.3023 25 6 5.0758 -6.4749 -4.8019 26 6 5.1022 -5.8893 -6.1531 27 7 4.1505 -5.0107 -6.5255 28 8 5.9828 -6.1987 -6.9328 29 8 4.1606 -6.2171 -3.8499 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6840 -3.7142 0.8922 33 1 2.6853 -3.7149 -0.8879 34 1 -0.2736 -3.8689 1.3980 35 1 0.9524 -4.9167 2.1513 36 1 -1.4099 -5.8661 0.4673 37 1 -1.2930 -5.9659 2.2404 38 1 -0.6744 -8.1229 1.1842 39 1 0.7181 -7.4015 2.0266 40 1 0.1456 -7.1973 -0.9646 41 1 1.3715 -8.2456 -0.2113 42 1 2.2988 -5.6014 -2.1205 43 1 6.0743 -8.3282 -2.3008 44 1 6.8319 -7.7802 -4.8195 45 1 3.4483 -4.7637 -5.9035 46 1 4.1675 -4.6253 -7.4155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733078943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:09 Heat of formation + Delta-G solvation = -90.918698 kcal Electronic energy + Delta-G solvation = -28992.039911 eV Core-core repulsion = 24881.643646 eV Total energy + Delta-G solvation = -4110.396265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.97720 -41.24213 -40.37524 -39.36652 -36.42865 -35.45994 -35.03166 -34.15302 -33.68670 -31.77512 -31.21748 -30.19730 -27.04495 -25.91873 -24.72713 -23.79068 -22.80901 -22.11642 -21.98882 -21.38891 -20.92761 -19.82672 -19.25435 -18.67933 -17.98500 -17.79646 -17.41092 -16.73372 -16.23421 -16.08837 -15.70538 -15.59398 -15.39818 -15.36996 -15.12853 -14.81121 -14.58477 -14.43063 -14.29740 -14.21164 -14.04581 -13.64727 -13.32644 -12.95352 -12.76259 -12.66750 -12.23006 -12.11739 -11.95079 -11.89250 -11.84730 -11.64567 -11.39610 -11.28179 -11.23516 -11.09714 -10.93267 -10.89976 -10.24921 -9.89315 -8.98143 -7.95144 -5.22876 -0.55795 0.74933 1.14141 1.47233 1.47921 1.56348 1.91540 1.92798 1.97486 2.38474 2.55340 3.38534 3.42562 3.56288 3.68608 3.76615 3.84558 3.93401 4.11046 4.25898 4.33020 4.36394 4.39534 4.45340 4.49162 4.52894 4.57332 4.71803 4.85151 4.88635 5.04504 5.06275 5.10399 5.13447 5.24343 5.28563 5.32173 5.35802 5.42733 5.47301 5.50028 5.60144 5.68114 6.14816 6.27246 6.32639 6.88520 6.99142 7.34887 8.09986 8.34790 9.27937 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007638 B = 0.003698 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3664.793972 B = 7570.101689 C =10388.969479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.067 4.067 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.738 5.738 10 C 0.158 3.842 11 C -0.085 4.085 12 H 0.081 0.919 13 C -0.105 4.105 14 C -0.115 4.115 15 C -0.110 4.110 16 C -0.120 4.120 17 C 0.160 3.840 18 H 0.077 0.923 19 N -0.699 5.699 20 C 0.603 3.397 21 O -0.543 6.543 22 C -0.050 4.050 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.059 4.059 26 C 0.610 3.390 27 N -0.820 5.820 28 O -0.553 6.553 29 O -0.149 6.149 30 H 0.252 0.748 31 H 0.377 0.623 32 H 0.007 0.993 33 H 0.022 0.978 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.414 0.586 43 H 0.183 0.817 44 H 0.185 0.815 45 H 0.419 0.581 46 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.261 -17.959 -7.655 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.032 3.968 11 C -0.105 4.105 12 H 0.099 0.901 13 C -0.143 4.143 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.158 4.158 17 C 0.055 3.945 18 H 0.095 0.905 19 N -0.349 5.349 20 C 0.389 3.611 21 O -0.422 6.422 22 C -0.104 4.104 23 C -0.150 4.150 24 C -0.148 4.148 25 C -0.113 4.113 26 C 0.394 3.606 27 N -0.383 5.383 28 O -0.433 6.433 29 O -0.044 6.044 30 H 0.060 0.940 31 H 0.210 0.790 32 H 0.025 0.975 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.250 0.750 43 H 0.200 0.800 44 H 0.202 0.798 45 H 0.251 0.749 46 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 3.990 -18.397 -7.378 20.219 hybrid contribution -0.177 1.788 -0.286 1.819 sum 3.813 -16.609 -7.664 18.685 Atomic orbital electron populations 1.69785 1.06366 1.26033 1.59335 1.25438 0.96304 1.00654 1.03631 0.85246 0.77677 0.79983 0.77490 1.21259 1.22129 1.19972 1.19551 0.91254 0.85533 1.41404 0.91326 1.42490 1.05629 1.00753 1.89273 1.20785 0.93700 0.85112 0.97224 1.21440 0.96856 0.92274 0.99888 0.90092 1.21435 0.97966 0.98976 0.95912 1.21549 0.97421 0.93623 1.02621 1.21474 0.98959 0.97687 0.96697 1.21865 0.97439 0.96995 0.99502 1.21032 0.92748 0.94987 0.85687 0.90454 1.45999 1.26433 1.44661 1.17763 1.16730 0.80081 0.80187 0.84145 1.90856 1.69552 1.43656 1.38154 1.22401 1.00414 1.00008 0.87562 1.22223 0.94911 1.00822 0.97022 1.22240 1.00792 0.97343 0.94395 1.22463 0.93701 1.04300 0.90820 1.16624 0.82013 0.78979 0.82981 1.43615 1.29258 1.44712 1.20764 1.90910 1.37777 1.62876 1.51771 1.84025 1.45663 1.54753 1.20009 0.93956 0.79020 0.97548 0.96037 0.93056 0.92485 0.91424 0.91013 0.89853 0.91969 0.90561 0.91705 0.74996 0.79970 0.79756 0.74925 0.74447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.15 13.06 21.65 0.28 -56.86 16 2 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 3 Si 0.97 45.29 29.55 68.60 2.03 47.31 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.25 -13.41 9.99 84.03 0.84 -12.57 16 8 H 0.07 3.67 7.83 -2.92 -0.02 3.65 16 9 N -0.74 -35.76 5.33 -343.44 -1.83 -37.59 16 10 C 0.16 6.01 5.56 86.38 0.48 6.49 16 11 C -0.09 -2.43 1.80 -10.79 -0.02 -2.45 16 12 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 13 C -0.10 -2.96 5.08 30.60 0.16 -2.81 16 14 C -0.11 -2.43 5.92 30.59 0.18 -2.25 16 15 C -0.11 -2.03 5.92 30.60 0.18 -1.85 16 16 C -0.12 -2.40 5.50 30.61 0.17 -2.23 16 17 C 0.16 3.91 1.90 45.01 0.09 4.00 16 18 H 0.08 2.18 7.58 -2.39 -0.02 2.16 16 19 N -0.70 -16.27 4.30 -445.86 -1.92 -18.18 16 20 C 0.60 15.31 7.77 86.62 0.67 15.98 16 21 O -0.54 -16.54 16.52 -4.07 -0.07 -16.61 16 22 C -0.05 -1.11 7.14 24.26 0.17 -0.94 16 23 C -0.13 -2.53 10.60 22.32 0.24 -2.29 16 24 C -0.13 -2.36 10.60 22.32 0.24 -2.13 16 25 C -0.06 -1.18 7.14 24.26 0.17 -1.00 16 26 C 0.61 12.11 8.08 86.62 0.70 12.81 16 27 N -0.82 -10.43 8.87 -175.99 -1.56 -11.99 16 28 O -0.55 -14.41 17.70 -4.08 -0.07 -14.48 16 29 O -0.15 -3.02 10.14 -7.36 -0.07 -3.09 16 30 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.38 19.19 6.85 -92.71 -0.63 18.56 16 32 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 33 H 0.02 0.81 7.31 -2.38 -0.02 0.79 16 34 H 0.05 1.76 7.18 -2.39 -0.02 1.74 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.41 8.63 8.15 -92.71 -0.76 7.87 16 43 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 44 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 45 H 0.42 4.11 8.59 -92.71 -0.80 3.31 16 46 H 0.42 3.89 8.93 -92.71 -0.83 3.06 16 Total: -1.00 -70.29 385.41 -0.44 -70.73 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: -1.96 Total: 35.32 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 4.73 Total: 5.45 kcal Atomic # 7 Polarization: -119.61 SS G_CDS: -5.03 Total: -124.63 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.21 Total: -34.18 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -70.29 -0.44 -70.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733078943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.185 kcal (2) G-P(sol) polarization free energy of solvation -70.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds