Wall clock time and date at job start Tue Mar 31 2020 18:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99613 * 2 1 4 4 H 1.48501 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47433 * 299.99574 * 3 2 1 6 6 H 1.48504 * 109.47255 * 59.99853 * 3 2 1 7 7 C 1.38807 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00236 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99939 * 174.44100 * 9 7 2 11 11 C 1.52998 * 109.54295 * 302.39737 * 10 9 7 12 12 N 1.46502 * 109.47001 * 305.14052 * 11 10 9 13 13 C 1.34778 * 119.99897 * 185.05238 * 12 11 10 14 14 O 1.21275 * 119.99995 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99610 * 179.97438 * 13 12 11 16 16 O 1.42906 * 109.47098 * 179.97438 * 15 13 12 17 17 C 1.35909 * 117.00153 * 179.97438 * 16 15 13 18 18 C 1.39140 * 120.47101 * 179.72579 * 17 16 15 19 19 C 1.38536 * 118.37106 * 179.71607 * 18 17 16 20 20 C 1.38261 * 119.22113 * 0.58020 * 19 18 17 21 21 N 1.31840 * 120.88560 * 359.68522 * 20 19 18 22 22 C 1.31845 * 121.78448 * 0.02562 * 21 20 19 23 23 C 1.53180 * 109.54069 * 62.56927 * 10 9 7 24 24 C 1.53109 * 109.15669 * 63.06533 * 23 10 9 25 25 O 1.42907 * 109.48633 * 57.47277 * 24 23 10 26 26 C 1.42906 * 114.09799 * 298.88880 * 25 24 23 27 27 C 1.53094 * 109.41477 * 61.15758 * 26 25 24 28 28 H 0.97001 * 120.00451 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00024 * 354.44471 * 9 7 2 30 30 H 1.08994 * 109.47377 * 65.13599 * 11 10 9 31 31 H 1.08998 * 109.47115 * 185.14151 * 11 10 9 32 32 H 0.97002 * 120.00040 * 5.04556 * 12 11 10 33 33 H 1.09005 * 109.47577 * 299.99699 * 15 13 12 34 34 H 1.09002 * 109.47223 * 59.99981 * 15 13 12 35 35 H 1.08001 * 120.81430 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.39281 * 180.26252 * 19 18 17 37 37 H 1.08004 * 119.55649 * 179.69579 * 20 19 18 38 38 H 1.07998 * 119.65902 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.52076 * 182.87714 * 23 10 9 40 40 H 1.08995 * 109.52586 * 303.07329 * 23 10 9 41 41 H 1.09005 * 109.40439 * 297.49266 * 24 23 10 42 42 H 1.08998 * 109.49390 * 177.50754 * 24 23 10 43 43 H 1.09005 * 109.47728 * 301.17832 * 26 25 24 44 44 H 1.08994 * 109.49232 * 181.14613 * 26 25 24 45 45 H 1.08999 * 109.52381 * 182.48901 * 27 26 25 46 46 H 1.08998 * 109.57528 * 62.33023 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0531 -3.6538 -0.1218 11 6 2.8730 -3.6501 -1.4135 12 7 1.9925 -3.3682 -2.5500 13 6 2.4779 -3.4153 -3.8064 14 8 3.6436 -3.6906 -3.9962 15 6 1.5720 -3.1258 -4.9754 16 8 2.3136 -3.2375 -6.1919 17 6 1.6394 -3.0061 -7.3490 18 6 2.2924 -3.0896 -8.5749 19 6 1.5618 -2.8511 -9.7275 20 6 0.2214 -2.5286 -9.6224 21 7 -0.3660 -2.4523 -8.4446 22 6 0.2921 -2.6774 -7.3245 23 6 2.9890 -3.8249 1.0786 24 6 2.1538 -3.9086 2.3591 25 8 1.2270 -4.9913 2.2538 26 6 0.2962 -4.8600 1.1774 27 6 1.0566 -4.8168 -0.1506 28 1 -0.4851 0.8400 -0.0004 29 1 0.3590 -2.3900 0.0815 30 1 3.6441 -2.8823 -1.3523 31 1 3.3410 -4.6251 -1.5496 32 1 1.0601 -3.1477 -2.3982 33 1 0.7497 -3.8414 -4.9839 34 1 1.1734 -2.1154 -4.8848 35 1 3.3419 -3.3392 -8.6268 36 1 2.0348 -2.9114 -10.6965 37 1 -0.3522 -2.3368 -10.5172 38 1 -0.2233 -2.6050 -6.3781 39 1 3.5672 -4.7415 0.9619 40 1 3.6649 -2.9719 1.1382 41 1 1.6081 -2.9752 2.4972 42 1 2.8115 -4.0748 3.2122 43 1 -0.2738 -3.9390 1.3001 44 1 -0.3842 -5.7115 1.1791 45 1 0.3518 -4.6723 -0.9694 46 1 1.5945 -5.7538 -0.2941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733471530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:37 Heat of formation + Delta-G solvation = -66.516077 kcal Electronic energy + Delta-G solvation = -29249.775690 eV Core-core repulsion = 25140.437603 eV Total energy + Delta-G solvation = -4109.338088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84581 -39.77828 -39.00394 -37.83922 -35.86784 -33.55885 -32.63698 -32.29780 -30.72074 -30.66966 -29.27012 -28.93083 -26.36750 -24.16844 -23.87512 -23.25008 -23.01191 -22.04245 -20.21428 -18.74304 -18.52742 -17.59912 -17.18045 -16.90068 -16.48568 -16.23292 -15.65697 -15.64171 -15.39257 -14.86622 -14.59971 -14.50944 -14.39288 -13.95749 -13.84461 -13.52137 -13.41339 -13.20950 -12.81648 -12.68675 -12.36392 -12.28989 -12.11588 -11.83269 -11.56837 -11.43990 -10.99293 -10.97081 -10.86743 -10.38366 -10.11467 -9.94651 -9.89764 -9.79671 -9.75451 -9.53785 -9.19510 -8.91942 -8.67737 -8.59660 -7.19425 -5.95217 -3.26229 0.88436 1.07638 2.53519 2.81559 3.32554 3.41086 3.41593 3.58687 3.75890 4.29889 4.30804 4.42371 4.44608 4.63685 4.75826 4.88736 4.92980 5.03687 5.10775 5.17540 5.18215 5.27262 5.30894 5.46530 5.47643 5.56848 5.69611 5.75207 5.86018 5.92148 6.01034 6.04174 6.12038 6.23129 6.26660 6.32111 6.45822 6.48203 6.64058 6.70421 6.84553 6.99931 7.57842 7.64192 7.73252 7.84811 8.21725 8.48003 9.35097 9.84350 10.21101 11.26251 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.003117 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.902366 B = 8981.176493 C =10290.215319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.004 4.004 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.714 5.714 10 C 0.189 3.811 11 C 0.122 3.878 12 N -0.693 5.693 13 C 0.513 3.487 14 O -0.534 6.534 15 C 0.037 3.963 16 O -0.282 6.282 17 C 0.084 3.916 18 C -0.108 4.108 19 C -0.133 4.133 20 C 0.054 3.946 21 N -0.449 5.449 22 C 0.015 3.985 23 C -0.155 4.155 24 C 0.070 3.930 25 O -0.392 6.392 26 C 0.066 3.934 27 C -0.151 4.151 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.406 0.594 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -9.014 -10.858 14.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.356 5.356 10 C 0.097 3.903 11 C -0.003 4.003 12 N -0.345 5.345 13 C 0.297 3.703 14 O -0.411 6.411 15 C -0.042 4.042 16 O -0.193 6.193 17 C 0.036 3.964 18 C -0.135 4.135 19 C -0.152 4.152 20 C -0.103 4.103 21 N -0.158 5.158 22 C -0.143 4.143 23 C -0.196 4.196 24 C -0.007 4.007 25 O -0.312 6.312 26 C -0.011 4.011 27 C -0.190 4.190 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.242 0.758 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.174 0.826 38 H 0.178 0.822 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.234 -9.053 -10.765 14.068 hybrid contribution 0.456 1.349 -0.120 1.429 sum 0.690 -7.705 -10.886 13.354 Atomic orbital electron populations 1.69642 1.05002 1.25768 1.57215 1.24682 0.95406 0.97536 1.02456 0.86224 0.79026 0.84345 0.77219 1.20536 1.21895 1.21845 1.19110 0.91051 0.83595 1.43154 0.91097 1.42524 1.06148 0.99454 1.87494 1.19844 0.91530 0.87370 0.91562 1.21805 0.93148 0.99847 0.85531 1.45572 1.15059 1.69471 1.04441 1.19757 0.88223 0.78462 0.83855 1.90711 1.17189 1.47999 1.85240 1.22612 0.94761 1.03935 0.82881 1.86172 1.37040 1.84559 1.11505 1.20164 0.92329 0.96645 0.87267 1.20979 1.01428 1.01658 0.89411 1.22020 0.95392 0.99061 0.98754 1.22670 0.92770 0.99296 0.95597 1.67530 1.38967 1.11040 0.98289 1.23015 0.90795 1.02291 0.98183 1.22498 0.99051 1.01460 0.96545 1.22449 0.91178 0.90429 0.96604 1.87810 1.46549 1.46031 1.50767 1.22467 0.91088 1.01613 0.85968 1.22360 0.99351 0.98718 0.98522 0.93449 0.77993 0.91420 0.92463 0.75776 0.88915 0.88390 0.83839 0.84076 0.82571 0.82237 0.92508 0.90467 0.91495 0.90273 0.92315 0.89959 0.91178 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.95 13.06 55.49 0.72 -24.23 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 3 Si 0.90 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -5.65 8.69 -15.06 -0.13 -5.79 16 8 H 0.07 1.72 6.76 -52.48 -0.35 1.36 16 9 N -0.71 -14.43 3.66 -47.06 -0.17 -14.60 16 10 C 0.19 3.14 0.41 -131.63 -0.05 3.08 16 11 C 0.12 2.08 4.29 -4.04 -0.02 2.06 16 12 N -0.69 -11.05 5.12 -60.30 -0.31 -11.36 16 13 C 0.51 8.48 7.91 -10.99 -0.09 8.40 16 14 O -0.53 -10.89 16.49 -14.35 -0.24 -11.13 16 15 C 0.04 0.47 5.23 36.00 0.19 0.66 16 16 O -0.28 -4.11 9.68 -39.36 -0.38 -4.49 16 17 C 0.08 1.06 6.71 -39.07 -0.26 0.80 16 18 C -0.11 -1.16 10.13 -39.14 -0.40 -1.56 16 19 C -0.13 -1.15 10.11 -39.46 -0.40 -1.55 16 20 C 0.05 0.53 11.18 -17.54 -0.20 0.34 16 21 N -0.45 -5.55 10.35 -13.12 -0.14 -5.69 16 22 C 0.02 0.18 10.22 -17.37 -0.18 0.01 16 23 C -0.16 -2.52 4.85 -26.58 -0.13 -2.65 16 24 C 0.07 1.14 6.68 37.21 0.25 1.39 16 25 O -0.39 -6.45 10.77 -35.23 -0.38 -6.83 16 26 C 0.07 0.97 6.67 37.21 0.25 1.21 16 27 C -0.15 -2.15 4.81 -26.59 -0.13 -2.28 16 28 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 29 H 0.38 8.38 6.67 -40.82 -0.27 8.10 16 30 H 0.07 1.32 7.45 -51.93 -0.39 0.93 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.41 6.16 7.45 -40.82 -0.30 5.85 16 33 H 0.09 0.91 7.68 -51.93 -0.40 0.51 16 34 H 0.10 1.16 7.68 -51.93 -0.40 0.76 16 35 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 38 H 0.16 1.66 6.32 -52.49 -0.33 1.32 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.34 7.23 -51.93 -0.38 0.97 16 41 H 0.07 1.25 7.75 -51.93 -0.40 0.85 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.06 0.96 7.05 -51.93 -0.37 0.59 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.07 0.92 7.41 -51.93 -0.38 0.54 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -30.83 376.03 -8.13 -38.96 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -6.49 Total: 13.72 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.39 Total: 3.92 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.11 Total: -55.88 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -1.00 Total: -22.45 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.83 -8.13 -38.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733471530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.559 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds