Wall clock time and date at job start Tue Mar 31 2020 18:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99613 * 2 1 4 4 H 1.48501 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47433 * 299.99574 * 3 2 1 6 6 H 1.48504 * 109.47255 * 59.99853 * 3 2 1 7 7 C 1.38807 * 120.00410 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00236 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99939 * 174.44100 * 9 7 2 11 11 C 1.52998 * 109.54295 * 302.39737 * 10 9 7 12 12 N 1.46502 * 109.47001 * 305.14052 * 11 10 9 13 13 C 1.34778 * 119.99897 * 185.05238 * 12 11 10 14 14 O 1.21275 * 119.99995 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.99610 * 179.97438 * 13 12 11 16 16 O 1.42906 * 109.47098 * 179.97438 * 15 13 12 17 17 C 1.35909 * 117.00153 * 179.97438 * 16 15 13 18 18 C 1.39140 * 120.47101 * 179.72579 * 17 16 15 19 19 C 1.38536 * 118.37106 * 179.71607 * 18 17 16 20 20 C 1.38261 * 119.22113 * 0.58020 * 19 18 17 21 21 N 1.31840 * 120.88560 * 359.68522 * 20 19 18 22 22 C 1.31845 * 121.78448 * 0.02562 * 21 20 19 23 23 C 1.53180 * 109.54069 * 62.56927 * 10 9 7 24 24 C 1.53109 * 109.15669 * 63.06533 * 23 10 9 25 25 O 1.42907 * 109.48633 * 57.47277 * 24 23 10 26 26 C 1.42906 * 114.09799 * 298.88880 * 25 24 23 27 27 C 1.53094 * 109.41477 * 61.15758 * 26 25 24 28 28 H 0.97001 * 120.00451 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00024 * 354.44471 * 9 7 2 30 30 H 1.08994 * 109.47377 * 65.13599 * 11 10 9 31 31 H 1.08998 * 109.47115 * 185.14151 * 11 10 9 32 32 H 0.97002 * 120.00040 * 5.04556 * 12 11 10 33 33 H 1.09005 * 109.47577 * 299.99699 * 15 13 12 34 34 H 1.09002 * 109.47223 * 59.99981 * 15 13 12 35 35 H 1.08001 * 120.81430 * 0.02562 * 18 17 16 36 36 H 1.07997 * 120.39281 * 180.26252 * 19 18 17 37 37 H 1.08004 * 119.55649 * 179.69579 * 20 19 18 38 38 H 1.07998 * 119.65902 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.52076 * 182.87714 * 23 10 9 40 40 H 1.08995 * 109.52586 * 303.07329 * 23 10 9 41 41 H 1.09005 * 109.40439 * 297.49266 * 24 23 10 42 42 H 1.08998 * 109.49390 * 177.50754 * 24 23 10 43 43 H 1.09005 * 109.47728 * 301.17832 * 26 25 24 44 44 H 1.08994 * 109.49232 * 181.14613 * 26 25 24 45 45 H 1.08999 * 109.52381 * 182.48901 * 27 26 25 46 46 H 1.08998 * 109.57528 * 62.33023 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0531 -3.6538 -0.1218 11 6 2.8730 -3.6501 -1.4135 12 7 1.9925 -3.3682 -2.5500 13 6 2.4779 -3.4153 -3.8064 14 8 3.6436 -3.6906 -3.9962 15 6 1.5720 -3.1258 -4.9754 16 8 2.3136 -3.2375 -6.1919 17 6 1.6394 -3.0061 -7.3490 18 6 2.2924 -3.0896 -8.5749 19 6 1.5618 -2.8511 -9.7275 20 6 0.2214 -2.5286 -9.6224 21 7 -0.3660 -2.4523 -8.4446 22 6 0.2921 -2.6774 -7.3245 23 6 2.9890 -3.8249 1.0786 24 6 2.1538 -3.9086 2.3591 25 8 1.2270 -4.9913 2.2538 26 6 0.2962 -4.8600 1.1774 27 6 1.0566 -4.8168 -0.1506 28 1 -0.4851 0.8400 -0.0004 29 1 0.3590 -2.3900 0.0815 30 1 3.6441 -2.8823 -1.3523 31 1 3.3410 -4.6251 -1.5496 32 1 1.0601 -3.1477 -2.3982 33 1 0.7497 -3.8414 -4.9839 34 1 1.1734 -2.1154 -4.8848 35 1 3.3419 -3.3392 -8.6268 36 1 2.0348 -2.9114 -10.6965 37 1 -0.3522 -2.3368 -10.5172 38 1 -0.2233 -2.6050 -6.3781 39 1 3.5672 -4.7415 0.9619 40 1 3.6649 -2.9719 1.1382 41 1 1.6081 -2.9752 2.4972 42 1 2.8115 -4.0748 3.2122 43 1 -0.2738 -3.9390 1.3001 44 1 -0.3842 -5.7115 1.1791 45 1 0.3518 -4.6723 -0.9694 46 1 1.5945 -5.7538 -0.2941 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733471530.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:36 Heat of formation + Delta-G solvation = -87.768056 kcal Electronic energy + Delta-G solvation = -29250.697245 eV Core-core repulsion = 25140.437603 eV Total energy + Delta-G solvation = -4110.259643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.76559 -41.06558 -40.23464 -38.88356 -37.29128 -35.14492 -33.94129 -33.41391 -31.97746 -31.53328 -30.96472 -30.03872 -27.62841 -25.93552 -24.74974 -24.42940 -24.03183 -23.28976 -21.52081 -20.16103 -19.45010 -19.16885 -18.54141 -17.72190 -17.54547 -17.28947 -17.05737 -16.91663 -16.68799 -16.19859 -16.05249 -15.71903 -15.37896 -15.34866 -15.30998 -14.76137 -14.47360 -14.21178 -14.16296 -13.72253 -13.66886 -13.59562 -13.18462 -13.11096 -12.95681 -12.88895 -12.69106 -12.49716 -12.20420 -12.08566 -11.72157 -11.52762 -11.14146 -11.08008 -10.88683 -10.72136 -10.46233 -10.33523 -10.00635 -9.53193 -8.99067 -7.92168 -5.18271 0.10614 0.25660 1.42808 1.45483 1.48656 1.52745 1.55074 2.54109 2.64664 2.79162 3.08068 3.41091 3.50392 3.54813 3.72991 3.74264 3.86644 3.95930 3.98600 3.99518 4.04080 4.10044 4.15033 4.23953 4.43922 4.47558 4.59919 4.61517 4.75600 4.76842 4.83356 4.89729 4.97505 5.02494 5.09375 5.11841 5.21741 5.27624 5.34578 5.47141 5.53855 5.62941 6.07793 6.29799 6.37273 6.54881 6.93724 7.17650 7.40171 8.07723 8.35246 9.29666 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011293 B = 0.003117 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.902366 B = 8981.176493 C =10290.215319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.055 4.055 3 Si 0.943 3.057 4 H -0.277 1.277 5 H -0.301 1.301 6 H -0.298 1.298 7 C -0.213 4.213 8 H 0.065 0.935 9 N -0.713 5.713 10 C 0.188 3.812 11 C 0.128 3.872 12 N -0.688 5.688 13 C 0.511 3.489 14 O -0.577 6.577 15 C 0.042 3.958 16 O -0.307 6.307 17 C 0.062 3.938 18 C -0.119 4.119 19 C -0.120 4.120 20 C 0.051 3.949 21 N -0.477 5.477 22 C 0.004 3.996 23 C -0.153 4.153 24 C 0.075 3.925 25 O -0.398 6.398 26 C 0.064 3.936 27 C -0.143 4.143 28 H 0.248 0.752 29 H 0.379 0.621 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.412 0.588 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.152 0.848 36 H 0.180 0.820 37 H 0.187 0.813 38 H 0.169 0.831 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.099 0.901 43 H 0.039 0.961 44 H 0.112 0.888 45 H 0.083 0.917 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -10.514 -12.309 16.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.249 4.249 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.229 1.229 6 H -0.226 1.226 7 C -0.345 4.345 8 H 0.083 0.917 9 N -0.354 5.354 10 C 0.097 3.903 11 C 0.002 3.998 12 N -0.340 5.340 13 C 0.296 3.704 14 O -0.458 6.458 15 C -0.036 4.036 16 O -0.219 6.219 17 C 0.015 3.985 18 C -0.146 4.146 19 C -0.139 4.139 20 C -0.106 4.106 21 N -0.186 5.186 22 C -0.153 4.153 23 C -0.193 4.193 24 C -0.002 4.002 25 O -0.317 6.317 26 C -0.013 4.013 27 C -0.181 4.181 28 H 0.057 0.943 29 H 0.213 0.787 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.249 0.751 33 H 0.144 0.856 34 H 0.126 0.874 35 H 0.170 0.830 36 H 0.197 0.803 37 H 0.204 0.796 38 H 0.186 0.814 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.117 0.883 43 H 0.057 0.943 44 H 0.130 0.870 45 H 0.102 0.898 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.047 -10.578 -12.207 16.153 hybrid contribution 0.568 1.734 0.255 1.843 sum 0.615 -8.844 -11.952 14.881 Atomic orbital electron populations 1.69730 1.05713 1.25410 1.59759 1.25112 0.95919 0.99458 1.04379 0.85525 0.78338 0.82284 0.76287 1.20216 1.22873 1.22607 1.19222 0.90841 0.84694 1.39742 0.91664 1.42532 1.05841 0.99882 1.87133 1.20026 0.92077 0.86750 0.91463 1.21674 0.92715 0.99424 0.85969 1.45543 1.15081 1.69061 1.04287 1.20369 0.88081 0.77230 0.84671 1.90684 1.19177 1.50005 1.85885 1.22603 0.94249 1.05404 0.81318 1.86118 1.38166 1.85318 1.12289 1.20374 0.92809 0.98226 0.87132 1.21329 1.02168 1.01515 0.89546 1.22414 0.94874 0.96973 0.99632 1.23285 0.93616 0.97954 0.95782 1.67562 1.39798 1.12128 0.99146 1.23144 0.90747 1.02659 0.98767 1.22466 0.98792 1.01820 0.96246 1.22378 0.91121 0.89309 0.97372 1.87812 1.46700 1.45639 1.51524 1.22596 0.91056 1.01997 0.85654 1.22321 0.98985 0.98011 0.98826 0.94300 0.78697 0.94364 0.91300 0.75141 0.85599 0.87436 0.83034 0.80300 0.79622 0.81432 0.90390 0.92069 0.94501 0.88283 0.94294 0.87019 0.89840 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.08 13.06 21.65 0.28 -51.80 16 2 C -0.06 -2.86 5.50 84.86 0.47 -2.39 16 3 Si 0.94 44.01 29.55 68.60 2.03 46.04 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.21 -10.16 8.69 84.03 0.73 -9.43 16 8 H 0.07 3.18 6.76 -2.91 -0.02 3.16 16 9 N -0.71 -28.69 3.66 -302.80 -1.11 -29.80 16 10 C 0.19 6.03 0.41 3.72 0.00 6.03 16 11 C 0.13 4.27 4.29 86.38 0.37 4.64 16 12 N -0.69 -21.43 5.12 -463.07 -2.37 -23.80 16 13 C 0.51 16.70 7.91 87.66 0.69 17.39 16 14 O -0.58 -23.73 16.49 16.02 0.26 -23.47 16 15 C 0.04 1.06 5.23 71.24 0.37 1.43 16 16 O -0.31 -8.87 9.68 -73.49 -0.71 -9.58 16 17 C 0.06 1.52 6.71 22.60 0.15 1.68 16 18 C -0.12 -2.39 10.13 22.56 0.23 -2.16 16 19 C -0.12 -1.75 10.11 22.35 0.23 -1.52 16 20 C 0.05 0.88 11.18 84.70 0.95 1.82 16 21 N -0.48 -11.12 10.35 -195.43 -2.02 -13.15 16 22 C 0.00 0.09 10.22 84.80 0.87 0.96 16 23 C -0.15 -4.80 4.85 30.69 0.15 -4.65 16 24 C 0.07 2.36 6.68 72.02 0.48 2.84 16 25 O -0.40 -12.28 10.77 -148.98 -1.60 -13.88 16 26 C 0.06 1.74 6.67 72.01 0.48 2.22 16 27 C -0.14 -3.73 4.81 30.68 0.15 -3.58 16 28 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 29 H 0.38 16.46 6.67 -92.71 -0.62 15.85 16 30 H 0.04 1.50 7.45 -2.39 -0.02 1.48 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.41 12.03 7.45 -92.71 -0.69 11.34 16 33 H 0.13 2.26 7.68 -2.38 -0.02 2.25 16 34 H 0.11 2.48 7.68 -2.39 -0.02 2.46 16 35 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.17 3.35 6.32 -2.91 -0.02 3.33 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.06 2.11 7.23 -2.39 -0.02 2.09 16 41 H 0.04 1.38 7.75 -2.38 -0.02 1.36 16 42 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.04 1.23 7.05 -2.38 -0.02 1.21 16 44 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.08 1.98 7.41 -2.39 -0.02 1.96 16 46 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -67.66 376.03 0.78 -66.88 By element: Atomic # 1 Polarization: 37.58 SS G_CDS: -0.29 Total: 37.29 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 6.31 Total: 15.26 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -5.22 Total: -118.55 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -2.05 Total: -46.93 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -67.66 0.78 -66.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733471530.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.888 kcal (2) G-P(sol) polarization free energy of solvation -67.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds