Wall clock time and date at job start Tue Mar 31 2020 18:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86791 * 120.00020 * 2 1 4 4 H 1.48497 * 109.47382 * 269.99875 * 3 2 1 5 5 H 1.48507 * 109.47482 * 29.99870 * 3 2 1 6 6 H 1.48502 * 109.47110 * 149.99776 * 3 2 1 7 7 C 1.38810 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99581 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00586 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00433 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47261 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46870 * 179.97438 * 11 10 9 13 13 C 1.46494 * 120.00041 * 269.99997 * 12 11 10 14 14 C 1.53005 * 109.47281 * 277.09512 * 13 12 11 15 15 O 1.42901 * 109.46956 * 65.00056 * 14 13 12 16 16 C 1.34777 * 119.99989 * 90.00337 * 12 11 10 17 17 O 1.21509 * 119.99908 * 5.51333 * 16 12 11 18 18 C 1.48160 * 120.00046 * 185.51129 * 16 12 11 19 19 C 1.39617 * 120.89088 * 331.90612 * 18 16 12 20 20 C 1.38850 * 118.94380 * 179.97438 * 19 18 16 21 21 O 1.35692 * 119.61661 * 180.02562 * 20 19 18 22 22 N 1.32204 * 120.76026 * 0.02562 * 20 19 18 23 23 C 1.31879 * 121.96943 * 359.97438 * 22 20 19 24 24 C 1.50700 * 119.51117 * 179.97438 * 23 22 20 25 25 C 1.52991 * 117.49818 * 163.62271 * 24 23 22 26 26 C 1.52998 * 117.49889 * 94.99632 * 24 23 22 27 27 C 1.38022 * 120.97577 * 0.02562 * 23 22 20 28 28 H 0.96997 * 119.99938 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99428 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.46468 * 60.00087 * 10 9 7 31 31 H 1.09002 * 109.47103 * 300.00699 * 10 9 7 32 32 H 1.09002 * 109.46610 * 60.00004 * 11 10 9 33 33 H 1.08997 * 109.47183 * 300.00244 * 11 10 9 34 34 H 1.09003 * 109.47569 * 37.09428 * 13 12 11 35 35 H 1.09002 * 109.47146 * 157.09906 * 13 12 11 36 36 H 1.09002 * 109.46908 * 184.99817 * 14 13 12 37 37 H 1.08994 * 109.46907 * 304.99993 * 14 13 12 38 38 H 0.96704 * 113.99582 * 179.97438 * 15 14 13 39 39 H 1.07995 * 120.52392 * 359.97438 * 19 18 16 40 40 H 0.96700 * 113.99889 * 269.97522 * 21 20 19 41 41 H 1.09003 * 115.54686 * 309.32964 * 24 23 22 42 42 H 1.08996 * 117.50430 * 0.02562 * 25 24 23 43 43 H 1.09005 * 117.49856 * 145.02286 * 25 24 23 44 44 H 1.08991 * 117.50350 * 214.97610 * 26 24 23 45 45 H 1.09002 * 117.49810 * 359.97438 * 26 24 23 46 46 H 1.08001 * 120.43218 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 7 1.7963 -6.0885 -0.0018 13 6 2.1626 -6.7221 -1.2708 14 6 0.9733 -7.5249 -1.8021 15 8 -0.0985 -6.6346 -2.1196 16 6 2.1332 -6.6727 1.1651 17 8 1.7438 -6.2013 2.2152 18 6 2.9781 -7.8897 1.1675 19 6 2.9671 -8.7722 0.0857 20 6 3.7754 -9.9002 0.1303 21 8 3.7757 -10.7667 -0.9139 22 7 4.5448 -10.1397 1.1784 23 6 4.5810 -9.3288 2.2178 24 6 5.4781 -9.6559 3.3837 25 6 5.7854 -8.5324 4.3756 26 6 6.8673 -9.0154 3.4076 27 6 3.8086 -8.1855 2.2541 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.6846 -3.7145 0.8895 31 1 2.6848 -3.7146 -0.8905 32 1 0.4375 -4.7617 -0.8914 33 1 0.4368 -4.7622 0.8885 34 1 2.4353 -5.9544 -1.9950 35 1 3.0097 -7.3896 -1.1124 36 1 1.2727 -8.0675 -2.6988 37 1 0.6443 -8.2331 -1.0417 38 1 -0.8874 -7.0758 -2.4633 39 1 2.3397 -8.5804 -0.7722 40 1 3.1199 -11.4734 -0.8387 41 1 5.3829 -10.6665 3.7810 42 1 5.3384 -7.5567 4.1853 43 1 5.8924 -8.8037 5.4260 44 1 7.6860 -9.6042 3.8210 45 1 7.1326 -8.3577 2.5798 46 1 3.8455 -7.5273 3.1096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733618405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:49 Heat of formation + Delta-G solvation = -8.282912 kcal Electronic energy + Delta-G solvation = -29026.280186 eV Core-core repulsion = 24919.467278 eV Total energy + Delta-G solvation = -4106.812908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47362 -39.73973 -38.26462 -37.43271 -36.53710 -35.66405 -34.57612 -33.11615 -31.40825 -30.56203 -29.55643 -27.76365 -25.21944 -24.81537 -23.48194 -23.18562 -22.54001 -21.88239 -21.26648 -19.69075 -18.58438 -18.06623 -17.46276 -17.27263 -17.08182 -16.35013 -16.18064 -15.75901 -15.45057 -15.31516 -14.87356 -14.56378 -14.41986 -13.95291 -13.67630 -13.51183 -13.27749 -13.15639 -13.01103 -12.69335 -12.31702 -12.24424 -12.00301 -11.84573 -11.61894 -11.26907 -11.04710 -10.92005 -10.87396 -10.80214 -10.63373 -10.42291 -10.19492 -10.10031 -10.07699 -9.72977 -9.56253 -9.12333 -8.83682 -8.60457 -6.89320 -5.72378 -3.01513 0.39003 0.53349 2.57941 2.81108 2.94824 3.35937 3.46751 3.51129 3.51844 3.53794 3.84888 3.98114 4.10029 4.46802 4.52333 4.57219 4.64359 4.66062 4.70969 4.77473 4.84101 4.97552 5.00632 5.12177 5.17763 5.29931 5.34331 5.48419 5.54625 5.57771 5.65786 5.74458 5.78038 5.81697 5.91183 6.00822 6.06986 6.22864 6.51024 6.75276 6.92048 7.02947 7.32284 7.45490 7.49749 7.73356 8.05271 8.46041 9.56943 10.13452 10.48894 11.50560 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.002944 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.452680 B = 9508.470696 C =11229.407184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.108 3.892 12 N -0.585 5.585 13 C 0.072 3.928 14 C 0.053 3.947 15 O -0.557 6.557 16 C 0.551 3.449 17 O -0.516 6.516 18 C -0.057 4.057 19 C -0.196 4.196 20 C 0.312 3.688 21 O -0.478 6.478 22 N -0.486 5.486 23 C 0.184 3.816 24 C -0.113 4.113 25 C -0.171 4.171 26 C -0.160 4.160 27 C -0.124 4.124 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.379 0.621 39 H 0.171 0.829 40 H 0.401 0.599 41 H 0.125 0.875 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.820 -27.010 0.064 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.373 5.373 10 C 0.014 3.986 11 C -0.013 4.013 12 N -0.316 5.316 13 C -0.051 4.051 14 C -0.026 4.026 15 O -0.362 6.362 16 C 0.337 3.663 17 O -0.392 6.392 18 C -0.068 4.068 19 C -0.216 4.216 20 C 0.133 3.867 21 O -0.285 6.285 22 N -0.205 5.205 23 C 0.046 3.954 24 C -0.131 4.131 25 C -0.208 4.208 26 C -0.197 4.197 27 C -0.145 4.145 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.226 0.774 39 H 0.188 0.812 40 H 0.259 0.741 41 H 0.143 0.857 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 8.083 -26.562 0.552 27.770 hybrid contribution -1.070 0.761 -0.318 1.351 sum 7.013 -25.801 0.235 26.738 Atomic orbital electron populations 1.69668 1.05090 1.25643 1.57754 1.24746 0.95559 0.97676 1.03011 0.86162 0.78651 0.83746 0.77475 1.21718 1.21725 1.20764 1.19204 0.90990 0.83992 1.42694 0.91246 1.42184 1.05892 0.99678 1.89572 1.20904 0.93899 0.85888 0.97883 1.21861 0.94651 0.80414 1.04398 1.47675 1.55909 1.23478 1.04582 1.22548 0.96625 0.99304 0.86619 1.22718 0.88943 0.92303 0.98671 1.86614 1.26196 1.36210 1.87182 1.18157 0.80583 0.83220 0.84304 1.90832 1.53560 1.64002 1.30761 1.20347 0.96929 0.95346 0.94172 1.23262 1.02034 0.96057 1.00287 1.18920 0.91873 0.89697 0.86213 1.84811 1.62831 1.42770 1.38094 1.66675 1.20411 1.33240 1.00193 1.20003 0.94153 0.89539 0.91687 1.20783 0.97266 0.99447 0.95631 1.23172 1.02603 0.98515 0.96513 1.23000 0.91405 1.03095 1.02201 1.22111 0.95529 0.97948 0.98917 0.93501 0.78175 0.96282 0.96492 0.88578 0.89722 0.88668 0.86621 0.92091 0.93312 0.77384 0.81229 0.74096 0.85668 0.87824 0.87618 0.87896 0.88499 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.06 55.49 0.72 -28.24 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.73 -19.55 5.60 -59.91 -0.34 -19.89 16 10 C 0.14 3.14 6.58 -4.04 -0.03 3.11 16 11 C 0.11 1.97 5.39 -4.04 -0.02 1.95 16 12 N -0.58 -8.61 2.47 -174.69 -0.43 -9.04 16 13 C 0.07 0.78 5.33 -4.04 -0.02 0.76 16 14 C 0.05 0.44 6.11 37.16 0.23 0.67 16 15 O -0.56 -5.81 11.86 -35.23 -0.42 -6.22 16 16 C 0.55 8.56 7.52 -12.19 -0.09 8.47 16 17 O -0.52 -9.98 16.31 5.36 0.09 -9.89 16 18 C -0.06 -0.70 5.62 -104.68 -0.59 -1.29 16 19 C -0.20 -1.92 7.50 -38.84 -0.29 -2.21 16 20 C 0.31 3.12 7.74 -17.17 -0.13 2.99 16 21 O -0.48 -3.71 13.56 -18.78 -0.25 -3.96 16 22 N -0.49 -5.52 10.27 -9.59 -0.10 -5.61 16 23 C 0.18 1.98 6.45 -82.65 -0.53 1.44 16 24 C -0.11 -0.95 6.21 -91.78 -0.57 -1.52 16 25 C -0.17 -1.26 9.79 -26.73 -0.26 -1.52 16 26 C -0.16 -1.20 10.23 -26.73 -0.27 -1.48 16 27 C -0.12 -1.46 8.93 -39.03 -0.35 -1.81 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.38 10.73 7.67 -40.82 -0.31 10.42 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 1.73 6.49 -51.93 -0.34 1.39 16 33 H 0.08 1.70 7.35 -51.93 -0.38 1.32 16 34 H 0.10 1.10 8.12 -51.93 -0.42 0.68 16 35 H 0.12 1.08 4.13 -51.93 -0.21 0.86 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 0.38 7.21 -51.93 -0.37 0.00 16 38 H 0.38 2.22 9.12 45.56 0.42 2.64 16 39 H 0.17 1.33 2.61 -52.49 -0.14 1.20 16 40 H 0.40 1.06 9.06 45.56 0.41 1.47 16 41 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 0.83 6.38 -51.93 -0.33 0.50 16 43 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.15 1.75 6.15 -52.49 -0.32 1.43 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -37.95 380.33 -7.71 -45.66 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -4.51 Total: 11.53 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -3.18 Total: 1.95 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.14 Total: -62.79 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.59 Total: -20.07 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.95 -7.71 -45.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733618405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.374 kcal (2) G-P(sol) polarization free energy of solvation -37.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds