Wall clock time and date at job start Tue Mar 31 2020 18:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86791 * 120.00020 * 2 1 4 4 H 1.48497 * 109.47382 * 269.99875 * 3 2 1 5 5 H 1.48507 * 109.47482 * 29.99870 * 3 2 1 6 6 H 1.48502 * 109.47110 * 149.99776 * 3 2 1 7 7 C 1.38810 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99581 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00586 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00433 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47261 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46870 * 179.97438 * 11 10 9 13 13 C 1.46494 * 120.00041 * 269.99997 * 12 11 10 14 14 C 1.53005 * 109.47281 * 277.09512 * 13 12 11 15 15 O 1.42901 * 109.46956 * 65.00056 * 14 13 12 16 16 C 1.34777 * 119.99989 * 90.00337 * 12 11 10 17 17 O 1.21509 * 119.99908 * 5.51333 * 16 12 11 18 18 C 1.48160 * 120.00046 * 185.51129 * 16 12 11 19 19 C 1.39617 * 120.89088 * 331.90612 * 18 16 12 20 20 C 1.38850 * 118.94380 * 179.97438 * 19 18 16 21 21 O 1.35692 * 119.61661 * 180.02562 * 20 19 18 22 22 N 1.32204 * 120.76026 * 0.02562 * 20 19 18 23 23 C 1.31879 * 121.96943 * 359.97438 * 22 20 19 24 24 C 1.50700 * 119.51117 * 179.97438 * 23 22 20 25 25 C 1.52991 * 117.49818 * 163.62271 * 24 23 22 26 26 C 1.52998 * 117.49889 * 94.99632 * 24 23 22 27 27 C 1.38022 * 120.97577 * 0.02562 * 23 22 20 28 28 H 0.96997 * 119.99938 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99428 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.46468 * 60.00087 * 10 9 7 31 31 H 1.09002 * 109.47103 * 300.00699 * 10 9 7 32 32 H 1.09002 * 109.46610 * 60.00004 * 11 10 9 33 33 H 1.08997 * 109.47183 * 300.00244 * 11 10 9 34 34 H 1.09003 * 109.47569 * 37.09428 * 13 12 11 35 35 H 1.09002 * 109.47146 * 157.09906 * 13 12 11 36 36 H 1.09002 * 109.46908 * 184.99817 * 14 13 12 37 37 H 1.08994 * 109.46907 * 304.99993 * 14 13 12 38 38 H 0.96704 * 113.99582 * 179.97438 * 15 14 13 39 39 H 1.07995 * 120.52392 * 359.97438 * 19 18 16 40 40 H 0.96700 * 113.99889 * 269.97522 * 21 20 19 41 41 H 1.09003 * 115.54686 * 309.32964 * 24 23 22 42 42 H 1.08996 * 117.50430 * 0.02562 * 25 24 23 43 43 H 1.09005 * 117.49856 * 145.02286 * 25 24 23 44 44 H 1.08991 * 117.50350 * 214.97610 * 26 24 23 45 45 H 1.09002 * 117.49810 * 359.97438 * 26 24 23 46 46 H 1.08001 * 120.43218 * 180.02562 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 7 1.7963 -6.0885 -0.0018 13 6 2.1626 -6.7221 -1.2708 14 6 0.9733 -7.5249 -1.8021 15 8 -0.0985 -6.6346 -2.1196 16 6 2.1332 -6.6727 1.1651 17 8 1.7438 -6.2013 2.2152 18 6 2.9781 -7.8897 1.1675 19 6 2.9671 -8.7722 0.0857 20 6 3.7754 -9.9002 0.1303 21 8 3.7757 -10.7667 -0.9139 22 7 4.5448 -10.1397 1.1784 23 6 4.5810 -9.3288 2.2178 24 6 5.4781 -9.6559 3.3837 25 6 5.7854 -8.5324 4.3756 26 6 6.8673 -9.0154 3.4076 27 6 3.8086 -8.1855 2.2541 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.6846 -3.7145 0.8895 31 1 2.6848 -3.7146 -0.8905 32 1 0.4375 -4.7617 -0.8914 33 1 0.4368 -4.7622 0.8885 34 1 2.4353 -5.9544 -1.9950 35 1 3.0097 -7.3896 -1.1124 36 1 1.2727 -8.0675 -2.6988 37 1 0.6443 -8.2331 -1.0417 38 1 -0.8874 -7.0758 -2.4633 39 1 2.3397 -8.5804 -0.7722 40 1 3.1199 -11.4734 -0.8387 41 1 5.3829 -10.6665 3.7810 42 1 5.3384 -7.5567 4.1853 43 1 5.8924 -8.8037 5.4260 44 1 7.6860 -9.6042 3.8210 45 1 7.1326 -8.3577 2.5798 46 1 3.8455 -7.5273 3.1096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733618405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:48 Heat of formation + Delta-G solvation = -40.808178 kcal Electronic energy + Delta-G solvation = -29027.690587 eV Core-core repulsion = 24919.467278 eV Total energy + Delta-G solvation = -4108.223309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.39481 -40.80598 -38.93327 -38.35632 -37.30094 -37.05739 -36.09454 -34.35328 -33.15716 -31.59661 -30.55252 -29.35327 -26.44724 -25.84288 -24.96715 -24.08979 -23.45794 -22.99998 -22.37088 -20.71937 -19.45991 -19.18287 -18.90208 -18.26024 -18.17878 -17.30329 -17.13928 -16.69293 -16.61920 -16.50068 -16.12985 -15.61107 -15.39567 -15.35631 -15.22443 -15.01028 -14.74969 -14.25948 -14.09134 -13.83535 -13.16399 -13.02170 -12.99750 -12.89455 -12.88257 -12.66948 -12.62684 -12.29915 -12.24912 -12.15062 -11.90626 -11.69973 -11.54798 -11.39717 -11.02471 -10.99957 -10.91071 -10.49192 -9.94741 -9.82988 -9.09649 -7.99323 -5.30859 -0.53022 -0.25918 1.43572 1.46951 1.48036 1.56615 1.68052 2.19574 2.52398 2.53918 2.82779 3.08814 3.22513 3.27814 3.33647 3.70489 3.74921 3.88945 3.95631 3.96975 4.01005 4.03333 4.08173 4.18600 4.21507 4.26921 4.37037 4.46042 4.51302 4.53037 4.59574 4.70306 4.77245 4.82307 4.96385 4.99766 5.03581 5.13354 5.20745 5.26270 5.33945 5.44493 6.15012 6.21589 6.51306 6.75453 6.83132 6.94239 7.27671 7.98102 8.24624 9.24115 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.002944 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.452680 B = 9508.470696 C =11229.407184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.254 4.254 8 H 0.073 0.927 9 N -0.741 5.741 10 C 0.149 3.851 11 C 0.129 3.871 12 N -0.582 5.582 13 C 0.063 3.937 14 C 0.053 3.947 15 O -0.587 6.587 16 C 0.549 3.451 17 O -0.566 6.566 18 C -0.069 4.069 19 C -0.183 4.183 20 C 0.321 3.679 21 O -0.478 6.478 22 N -0.500 5.500 23 C 0.184 3.816 24 C -0.122 4.122 25 C -0.169 4.169 26 C -0.155 4.155 27 C -0.137 4.137 28 H 0.254 0.746 29 H 0.376 0.624 30 H 0.001 0.999 31 H 0.027 0.973 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.398 0.602 39 H 0.192 0.808 40 H 0.425 0.575 41 H 0.138 0.862 42 H 0.091 0.909 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.085 0.915 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.142 -28.883 -1.118 30.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.808 3.192 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.385 4.385 8 H 0.091 0.909 9 N -0.384 5.384 10 C 0.021 3.979 11 C 0.005 3.995 12 N -0.312 5.312 13 C -0.059 4.059 14 C -0.025 4.025 15 O -0.396 6.396 16 C 0.337 3.663 17 O -0.445 6.445 18 C -0.079 4.079 19 C -0.204 4.204 20 C 0.141 3.859 21 O -0.289 6.289 22 N -0.219 5.219 23 C 0.047 3.953 24 C -0.141 4.141 25 C -0.206 4.206 26 C -0.193 4.193 27 C -0.158 4.158 28 H 0.063 0.937 29 H 0.208 0.792 30 H 0.019 0.981 31 H 0.045 0.955 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.152 0.848 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.248 0.752 39 H 0.209 0.791 40 H 0.287 0.713 41 H 0.156 0.844 42 H 0.109 0.891 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.104 0.896 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.417 -28.510 -0.675 30.033 hybrid contribution -1.461 1.229 -0.005 1.910 sum 7.955 -27.281 -0.679 28.425 Atomic orbital electron populations 1.69828 1.06659 1.26393 1.58831 1.25648 0.96527 1.01272 1.03015 0.85060 0.77558 0.78909 0.77712 1.20783 1.21792 1.19624 1.19587 0.91403 0.85176 1.42338 0.90922 1.42354 1.05667 1.00837 1.89574 1.20942 0.94303 0.85555 0.97096 1.21389 0.93620 0.80989 1.03459 1.47695 1.55171 1.22222 1.06140 1.22930 0.98747 0.99683 0.84511 1.22780 0.87558 0.91632 1.00510 1.86546 1.27591 1.37891 1.87568 1.18658 0.80133 0.83852 0.83644 1.90799 1.55469 1.65722 1.32481 1.20090 0.97331 0.94759 0.95760 1.23342 1.01937 0.95215 0.99879 1.19017 0.90902 0.89896 0.86078 1.84769 1.63908 1.43287 1.36907 1.66781 1.20984 1.33481 1.00703 1.20254 0.93931 0.88848 0.92255 1.20904 0.97517 1.00344 0.95328 1.23225 1.02248 0.97668 0.97435 1.23068 0.91555 1.02817 1.01847 1.22139 0.96254 0.98605 0.98797 0.93707 0.79216 0.98120 0.95536 0.87960 0.92090 0.89212 0.84772 0.88228 0.92308 0.75190 0.79133 0.71252 0.84385 0.89083 0.85768 0.85936 0.89611 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 3 Si 0.98 47.50 29.55 68.60 2.03 49.52 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.25 -15.04 9.99 84.03 0.84 -14.20 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -40.86 5.60 -343.45 -1.92 -42.79 16 10 C 0.15 6.72 6.58 86.38 0.57 7.29 16 11 C 0.13 4.82 5.39 86.38 0.47 5.29 16 12 N -0.58 -17.21 2.47 -824.88 -2.04 -19.25 16 13 C 0.06 1.26 5.33 86.38 0.46 1.72 16 14 C 0.05 0.75 6.11 71.98 0.44 1.19 16 15 O -0.59 -11.23 11.86 -148.98 -1.77 -12.99 16 16 C 0.55 17.49 7.52 86.88 0.65 18.15 16 17 O -0.57 -23.11 16.31 -3.74 -0.06 -23.17 16 18 C -0.07 -1.68 5.62 -19.90 -0.11 -1.79 16 19 C -0.18 -3.22 7.50 22.75 0.17 -3.05 16 20 C 0.32 5.61 7.74 84.78 0.66 6.27 16 21 O -0.48 -5.74 13.56 -90.11 -1.22 -6.96 16 22 N -0.50 -10.46 10.27 -297.15 -3.05 -13.51 16 23 C 0.18 3.83 6.45 42.50 0.27 4.10 16 24 C -0.12 -1.94 6.21 -11.54 -0.07 -2.02 16 25 C -0.17 -2.37 9.79 30.59 0.30 -2.07 16 26 C -0.16 -2.16 10.23 30.59 0.31 -1.84 16 27 C -0.14 -3.25 8.93 22.63 0.20 -3.05 16 28 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.38 21.72 7.67 -92.71 -0.71 21.01 16 30 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 3.73 6.49 -2.39 -0.02 3.71 16 33 H 0.06 2.58 7.35 -2.39 -0.02 2.56 16 34 H 0.09 1.94 8.12 -2.39 -0.02 1.92 16 35 H 0.14 2.19 4.13 -2.39 -0.01 2.18 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.73 7.21 -2.39 -0.02 0.71 16 38 H 0.40 3.90 9.12 -74.05 -0.68 3.22 16 39 H 0.19 2.41 2.61 -2.91 -0.01 2.41 16 40 H 0.43 0.61 9.06 -74.06 -0.67 -0.06 16 41 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.09 1.52 6.38 -2.39 -0.02 1.50 16 43 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.15 3.57 6.15 -2.91 -0.02 3.56 16 Total: -1.00 -83.40 380.33 -3.11 -86.51 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.99 Total: 31.19 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 5.63 Total: 12.16 kcal Atomic # 7 Polarization: -129.53 SS G_CDS: -6.73 Total: -136.26 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -3.05 Total: -43.12 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.52 kcal Total: -83.40 -3.11 -86.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733618405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.705 kcal (2) G-P(sol) polarization free energy of solvation -83.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds