Wall clock time and date at job start Tue Mar 31 2020 18:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00106 * 2 1 4 4 H 1.48503 * 109.47402 * 274.99936 * 3 2 1 5 5 H 1.48497 * 109.46971 * 34.99859 * 3 2 1 6 6 H 1.48502 * 109.47124 * 154.99645 * 3 2 1 7 7 C 1.38811 * 119.99581 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99951 * 185.12380 * 7 2 1 9 9 N 1.36932 * 120.00436 * 5.11699 * 7 2 1 10 10 C 1.47581 * 134.49386 * 184.91110 * 9 7 2 11 11 C 1.53952 * 86.11540 * 155.36456 * 10 9 7 12 12 C 1.53001 * 113.74039 * 269.15733 * 11 10 9 13 13 C 1.53002 * 109.46881 * 172.41271 * 12 11 10 14 14 O 1.42896 * 109.47232 * 175.20971 * 13 12 11 15 15 N 1.46499 * 113.73960 * 137.95510 * 11 10 9 16 16 C 1.34781 * 119.99817 * 74.31624 * 15 11 10 17 17 O 1.21275 * 120.00236 * 355.54015 * 16 15 11 18 18 C 1.50707 * 119.99728 * 175.54061 * 16 15 11 19 19 O 1.42898 * 109.46952 * 179.97438 * 18 16 15 20 20 C 1.42898 * 114.00114 * 180.02562 * 19 18 16 21 21 C 1.50692 * 109.47362 * 180.02562 * 20 19 18 22 22 C 1.38680 * 120.41768 * 269.72013 * 21 20 19 23 23 C 1.38630 * 118.41654 * 179.78126 * 22 21 20 24 24 C 1.38226 * 119.16404 * 0.51673 * 23 22 21 25 25 N 1.31858 * 120.76249 * 359.72408 * 24 23 22 26 26 C 1.31881 * 121.72656 * 0.02562 * 25 24 23 27 27 C 1.47812 * 134.45579 * 4.78925 * 9 7 2 28 28 H 0.97000 * 119.99985 * 0.02562 * 1 2 3 29 29 H 1.08999 * 113.76892 * 41.06937 * 10 9 7 30 30 H 1.08994 * 113.87578 * 269.67625 * 10 9 7 31 31 H 1.09004 * 109.47035 * 292.40937 * 12 11 10 32 32 H 1.08996 * 109.47142 * 52.40807 * 12 11 10 33 33 H 1.09001 * 109.46622 * 295.20510 * 13 12 11 34 34 H 1.08997 * 109.47344 * 55.20510 * 13 12 11 35 35 H 0.96698 * 114.00185 * 179.97438 * 14 13 12 36 36 H 0.96996 * 119.99895 * 254.58474 * 15 11 10 37 37 H 1.08997 * 109.46875 * 300.00377 * 18 16 15 38 38 H 1.08999 * 109.46935 * 59.99994 * 18 16 15 39 39 H 1.09004 * 109.46737 * 300.00072 * 20 19 18 40 40 H 1.09003 * 109.47300 * 59.99429 * 20 19 18 41 41 H 1.07994 * 120.78724 * 0.02562 * 22 21 20 42 42 H 1.08000 * 120.41285 * 180.21443 * 23 22 21 43 43 H 1.07995 * 119.61755 * 179.74522 * 24 23 22 44 44 H 1.07999 * 119.61962 * 180.02562 * 26 25 24 45 45 H 1.08997 * 113.77077 * 90.37500 * 27 9 7 46 46 H 1.09005 * 113.83778 * 318.91015 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1074 -1.3947 5 1 1.5045 2.6198 0.8030 6 1 3.5966 1.4119 0.5918 7 6 2.0101 -1.2022 -0.0005 8 1 3.0869 -1.2042 0.0830 9 7 1.3296 -2.3856 -0.1068 10 6 1.7151 -3.8091 -0.0508 11 6 0.2601 -4.0783 0.3742 12 6 0.0464 -4.0546 1.8890 13 6 -1.4503 -4.1429 2.1943 14 8 -1.6437 -4.2332 3.6072 15 7 -0.3342 -5.2532 -0.2682 16 6 0.0279 -6.4909 0.1238 17 8 0.9036 -6.6332 0.9507 18 6 -0.6555 -7.6980 -0.4654 19 8 -0.1005 -8.8851 0.1045 20 6 -0.6814 -10.0935 -0.3896 21 6 -0.0249 -11.2753 0.2761 22 6 1.0954 -11.8663 -0.2885 23 6 1.6688 -12.9483 0.3613 24 6 1.1025 -13.4057 1.5364 25 7 0.0337 -12.8220 2.0418 26 6 -0.5352 -11.7878 1.4536 27 6 -0.0868 -2.7496 -0.3216 28 1 -0.4850 0.8400 -0.0004 29 1 2.4480 -4.0356 0.7236 30 1 1.9754 -4.2341 -1.0201 31 1 0.5602 -4.9027 2.3417 32 1 0.4466 -3.1269 2.2979 33 1 -1.9515 -3.2523 1.8152 34 1 -1.8677 -5.0274 1.7131 35 1 -2.5712 -4.2920 3.8743 36 1 -0.9853 -5.1404 -0.9782 37 1 -1.7225 -7.6541 -0.2471 38 1 -0.5058 -7.7093 -1.5450 39 1 -1.7490 -10.0998 -0.1696 40 1 -0.5323 -10.1542 -1.4677 41 1 1.5135 -11.4901 -1.2104 42 1 2.5440 -13.4309 -0.0480 43 1 1.5407 -14.2507 2.0465 44 1 -1.4096 -11.3354 1.8978 45 1 -0.3575 -2.8611 -1.3715 46 1 -0.7900 -2.1318 0.2370 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734074299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:19 Heat of formation + Delta-G solvation = -59.074889 kcal Electronic energy + Delta-G solvation = -28560.522799 eV Core-core repulsion = 24451.507385 eV Total energy + Delta-G solvation = -4109.015413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.49723 -41.09742 -39.62234 -38.26438 -37.70905 -35.25244 -33.96812 -33.75578 -32.68982 -31.97207 -29.49280 -28.68443 -26.90022 -26.84114 -24.94326 -24.52457 -23.34814 -22.95922 -21.75067 -20.21239 -18.80203 -18.52234 -18.37051 -17.92605 -17.64610 -17.59569 -16.93547 -16.82747 -16.60790 -16.35086 -15.92762 -15.73195 -15.30435 -15.21741 -14.88879 -14.71861 -14.44522 -14.32437 -13.97562 -13.71186 -13.33138 -13.26609 -13.23101 -13.04585 -12.82495 -12.78748 -12.55379 -12.31496 -12.24266 -12.03640 -11.76177 -11.43834 -10.99812 -10.88858 -10.81288 -10.71753 -10.54415 -10.38637 -10.03357 -10.01915 -8.94782 -7.92505 -5.27034 0.06649 0.33111 1.45941 1.47074 1.56099 1.68886 1.87145 2.46180 2.75512 3.15405 3.19758 3.26270 3.39499 3.57570 3.64366 3.80048 3.89881 3.95880 4.07889 4.09383 4.12553 4.26207 4.30939 4.35244 4.39190 4.46815 4.47690 4.53033 4.70874 4.71625 4.73534 4.83659 4.85829 5.03150 5.13713 5.17209 5.18018 5.25221 5.30195 5.48899 5.71720 5.75868 5.91780 6.09128 6.69819 6.90091 6.91720 7.00099 7.37962 7.56401 8.49681 9.22679 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.002212 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.644267 B =12656.031626 C =13207.241849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.058 4.058 3 Si 0.977 3.023 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.632 5.632 10 C 0.120 3.880 11 C 0.160 3.840 12 C -0.091 4.091 13 C 0.094 3.906 14 O -0.594 6.594 15 N -0.702 5.702 16 C 0.506 3.494 17 O -0.566 6.566 18 C 0.050 3.950 19 O -0.393 6.393 20 C 0.105 3.895 21 C -0.153 4.153 22 C -0.064 4.064 23 C -0.175 4.175 24 C 0.087 3.913 25 N -0.520 5.520 26 C 0.101 3.899 27 C 0.164 3.836 28 H 0.251 0.749 29 H 0.032 0.968 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.396 0.604 36 H 0.419 0.581 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.154 0.846 42 H 0.164 0.836 43 H 0.178 0.822 44 H 0.164 0.836 45 H 0.042 0.958 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.661 -24.532 -5.269 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.251 4.251 3 Si 0.805 3.195 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.365 4.365 8 H 0.094 0.906 9 N -0.359 5.359 10 C -0.007 4.007 11 C 0.072 3.928 12 C -0.130 4.130 13 C 0.016 3.984 14 O -0.402 6.402 15 N -0.357 5.357 16 C 0.293 3.707 17 O -0.444 6.444 18 C -0.029 4.029 19 O -0.313 6.313 20 C 0.028 3.972 21 C -0.155 4.155 22 C -0.090 4.090 23 C -0.195 4.195 24 C -0.069 4.069 25 N -0.229 5.229 26 C -0.055 4.055 27 C 0.039 3.961 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.246 0.754 36 H 0.256 0.744 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.172 0.828 42 H 0.182 0.818 43 H 0.195 0.805 44 H 0.181 0.819 45 H 0.059 0.941 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.570 -24.608 -3.726 25.741 hybrid contribution 0.066 1.573 -1.137 1.942 sum -6.504 -23.035 -4.863 24.425 Atomic orbital electron populations 1.69930 1.06035 1.25778 1.57356 1.25535 0.96666 1.00452 1.02496 0.85085 0.77721 0.79276 0.77379 1.21133 1.21795 1.19859 1.19274 0.90832 0.83177 1.43229 0.90583 1.45918 1.05774 1.00096 1.84134 1.22972 0.95648 0.84267 0.97779 1.22154 0.93640 0.84830 0.92180 1.21185 0.96859 1.01393 0.93555 1.21947 0.95162 1.00120 0.81129 1.86448 1.33113 1.97334 1.23346 1.45822 1.45968 1.03913 1.40000 1.21068 0.82789 0.84989 0.81826 1.90720 1.32344 1.86555 1.34745 1.22348 0.98685 0.82477 0.99380 1.88063 1.62963 1.13358 1.66905 1.21446 0.97135 0.80495 0.98088 1.20821 0.98599 0.98273 0.97830 1.21919 0.92923 0.94008 1.00153 1.22505 1.02180 0.97896 0.96875 1.23308 0.91234 0.98734 0.93620 1.67722 1.11235 1.10044 1.33881 1.22963 0.99193 0.91860 0.91489 1.22617 0.87989 0.88804 0.96716 0.93955 0.94954 0.93328 0.91992 0.93389 0.93363 0.91932 0.75404 0.74352 0.86632 0.86771 0.89638 0.89538 0.82812 0.81813 0.80532 0.81918 0.94055 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.66 11.29 21.65 0.24 -54.42 16 2 C -0.06 -3.24 5.50 84.86 0.47 -2.78 16 3 Si 0.98 45.65 29.56 68.60 2.03 47.68 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.24 -13.47 10.69 84.03 0.90 -12.57 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.63 -32.65 3.54 -715.47 -2.53 -35.19 16 10 C 0.12 5.28 8.02 86.49 0.69 5.98 16 11 C 0.16 5.98 0.68 5.36 0.00 5.98 16 12 C -0.09 -3.69 4.68 30.60 0.14 -3.55 16 13 C 0.09 3.04 6.86 71.98 0.49 3.54 16 14 O -0.59 -19.09 13.66 -148.98 -2.03 -21.13 16 15 N -0.70 -18.58 4.52 -427.54 -1.93 -20.51 16 16 C 0.51 14.07 7.51 87.66 0.66 14.73 16 17 O -0.57 -22.34 14.68 16.02 0.24 -22.10 16 18 C 0.05 0.82 6.42 71.24 0.46 1.28 16 19 O -0.39 -8.67 9.86 -129.94 -1.28 -9.95 16 20 C 0.10 1.40 6.09 71.23 0.43 1.84 16 21 C -0.15 -2.66 5.53 -19.77 -0.11 -2.77 16 22 C -0.06 -0.97 9.86 22.47 0.22 -0.75 16 23 C -0.18 -2.40 10.11 22.36 0.23 -2.18 16 24 C 0.09 1.45 11.18 84.69 0.95 2.40 16 25 N -0.52 -11.34 10.36 -195.84 -2.03 -13.37 16 26 C 0.10 2.01 10.86 84.67 0.92 2.93 16 27 C 0.16 7.22 6.89 86.44 0.60 7.81 16 28 H 0.25 14.11 8.31 -92.71 -0.77 13.33 16 29 H 0.03 1.53 8.10 -2.39 -0.02 1.51 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.72 6.56 -2.39 -0.02 2.71 16 32 H 0.05 2.32 8.02 -2.39 -0.02 2.30 16 33 H 0.05 1.58 7.60 -2.39 -0.02 1.56 16 34 H 0.06 1.67 7.46 -2.39 -0.02 1.65 16 35 H 0.40 7.96 9.12 -74.06 -0.68 7.28 16 36 H 0.42 7.65 8.67 -92.71 -0.80 6.84 16 37 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 0.75 8.09 -2.38 -0.02 0.73 16 40 H 0.09 0.72 8.09 -2.39 -0.02 0.70 16 41 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 43 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 45 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.07 3.25 6.28 -2.38 -0.01 3.24 16 Total: -1.00 -83.94 388.61 -0.72 -84.66 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.47 Total: 22.44 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 7.05 Total: 21.88 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -6.25 Total: -123.48 kcal Atomic # 8 Polarization: -50.10 SS G_CDS: -3.08 Total: -53.18 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -83.94 -0.72 -84.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734074299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.583 kcal (2) G-P(sol) polarization free energy of solvation -83.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds