Wall clock time and date at job start Tue Mar 31 2020 18:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00078 * 2 1 4 4 H 1.48507 * 109.46724 * 269.99633 * 3 2 1 5 5 H 1.48497 * 109.46930 * 29.99278 * 3 2 1 6 6 H 1.48492 * 109.47255 * 149.99461 * 3 2 1 7 7 C 1.38813 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00002 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99904 * 180.02562 * 7 2 1 10 10 C 1.46505 * 120.00082 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46464 * 324.99086 * 10 9 7 12 12 C 1.52994 * 109.47412 * 84.99392 * 10 9 7 13 13 O 1.42895 * 109.47324 * 65.00129 * 12 10 9 14 14 C 1.53002 * 109.46727 * 204.99676 * 10 9 7 15 15 N 1.46498 * 109.47525 * 54.99850 * 14 10 9 16 16 C 1.34777 * 119.99936 * 180.02562 * 15 14 10 17 17 O 1.21574 * 119.99955 * 359.97438 * 16 15 14 18 18 C 1.47621 * 119.99737 * 179.97438 * 16 15 14 19 19 C 1.40284 * 120.49597 * 179.97438 * 18 16 15 20 20 C 1.37945 * 118.35665 * 180.29822 * 19 18 16 21 21 C 1.39179 * 119.26241 * 359.47752 * 20 19 18 22 22 O 1.35503 * 119.52559 * 180.27813 * 21 20 19 23 23 C 1.42899 * 117.00012 * 180.25456 * 22 21 20 24 24 C 1.53000 * 109.47320 * 179.97438 * 23 22 21 25 25 C 1.52996 * 117.49689 * 243.74731 * 24 23 22 26 26 C 1.52995 * 117.49877 * 175.08427 * 24 23 22 27 27 N 1.32407 * 120.94583 * 0.53199 * 21 20 19 28 28 C 1.31661 * 121.80173 * 359.72709 * 27 21 20 29 29 H 0.96999 * 119.99969 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00191 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46960 * 185.00277 * 12 10 9 32 32 H 1.09007 * 109.47127 * 304.99954 * 12 10 9 33 33 H 0.96701 * 114.00258 * 180.02562 * 13 12 10 34 34 H 1.08994 * 109.47189 * 294.99262 * 14 10 9 35 35 H 1.09001 * 109.46454 * 174.99740 * 14 10 9 36 36 H 0.96996 * 119.99494 * 359.97438 * 15 14 10 37 37 H 1.08002 * 120.81900 * 0.02562 * 19 18 16 38 38 H 1.08000 * 120.37265 * 179.69550 * 20 19 18 39 39 H 1.09002 * 109.46969 * 300.00333 * 23 22 21 40 40 H 1.08997 * 109.47093 * 59.99720 * 23 22 21 41 41 H 1.08999 * 115.54553 * 29.41376 * 24 23 22 42 42 H 1.09000 * 117.50191 * 359.97438 * 25 24 23 43 43 H 1.09001 * 117.50045 * 145.02169 * 25 24 23 44 44 H 1.08995 * 117.50159 * 214.97730 * 26 24 23 45 45 H 1.09005 * 117.50127 * 0.02562 * 26 24 23 46 46 H 1.07995 * 119.68739 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.5646 -3.2065 0.5903 12 6 4.2588 -2.9752 -1.4359 13 8 5.0752 -2.0674 -2.1784 14 6 5.4992 -2.2588 0.6112 15 7 5.3612 -1.6640 1.9429 16 6 6.4589 -1.3859 2.6737 17 8 7.5636 -1.6292 2.2281 18 6 6.3199 -0.7859 4.0153 19 6 7.4553 -0.4927 4.7852 20 6 7.2740 0.0616 6.0353 21 6 5.9822 0.3201 6.4841 22 8 5.7982 0.8697 7.7089 23 6 4.4496 1.1070 8.1175 24 6 4.4420 1.7257 9.5168 25 6 3.7920 0.9188 10.6425 26 6 3.0919 2.1624 10.0888 27 7 4.9302 0.0320 5.7334 28 6 5.0572 -0.5024 4.5368 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 4.7246 -3.9606 -1.4293 32 1 3.2746 -3.0416 -1.8999 33 1 5.2109 -2.3246 -3.1007 34 1 6.0785 -1.5915 -0.0266 35 1 6.0105 -3.2180 0.6930 36 1 4.4798 -1.4695 2.2982 37 1 8.4467 -0.7000 4.4102 38 1 8.1252 0.2957 6.6575 39 1 3.9719 1.7901 7.4151 40 1 3.9039 0.1636 8.1349 41 1 5.3142 2.3289 9.7687 42 1 3.3693 -0.0526 10.3862 43 1 4.2362 0.9915 11.6352 44 1 3.0758 3.0527 10.7174 45 1 2.2089 2.0085 9.4684 46 1 4.1756 -0.7239 3.9537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734386442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:40 Heat of formation + Delta-G solvation = -43.878315 kcal Electronic energy + Delta-G solvation = -28237.401750 eV Core-core repulsion = 24129.045309 eV Total energy + Delta-G solvation = -4108.356441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.97463 -39.53684 -38.33952 -37.29194 -36.89888 -35.08637 -33.69025 -32.67937 -31.80395 -30.89595 -28.91648 -27.84441 -25.57942 -24.13762 -23.53085 -23.08787 -22.74922 -20.99075 -20.52760 -20.16844 -18.78964 -18.19457 -17.34804 -17.27560 -16.90284 -16.44477 -15.88488 -15.48480 -15.15089 -15.00822 -14.78463 -14.46263 -14.32301 -13.84293 -13.62712 -13.58549 -13.48643 -13.19072 -13.06909 -12.83926 -12.75589 -12.41721 -11.96972 -11.74563 -11.63671 -11.52902 -11.03879 -10.89286 -10.87429 -10.74930 -10.33442 -10.19271 -10.14428 -10.11359 -9.68265 -9.62516 -9.48817 -9.03862 -8.90059 -8.61701 -7.39024 -5.86341 -3.23096 0.61656 1.02888 2.62325 2.91360 3.33946 3.35146 3.39924 3.41675 3.44101 3.76477 4.00559 4.35893 4.50263 4.52599 4.56900 4.66759 4.73700 4.78100 4.88697 4.90040 5.05658 5.17770 5.21357 5.27899 5.30207 5.31991 5.41766 5.44033 5.50710 5.62877 5.73371 5.77674 5.80032 5.88115 5.89754 5.95025 6.15382 6.18598 6.34974 6.57208 6.70935 6.97041 7.56676 7.73322 7.87001 8.08196 8.32424 8.36851 9.10278 9.82895 10.02674 11.31160 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.003014 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.953703 B = 9287.938367 C =11266.931226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.012 3.988 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.091 0.909 9 N -0.739 5.739 10 C 0.171 3.829 11 H 0.075 0.925 12 C 0.060 3.940 13 O -0.565 6.565 14 C 0.116 3.884 15 N -0.711 5.711 16 C 0.564 3.436 17 O -0.548 6.548 18 C -0.224 4.224 19 C 0.016 3.984 20 C -0.200 4.200 21 C 0.341 3.659 22 O -0.301 6.301 23 C 0.100 3.900 24 C -0.160 4.160 25 C -0.177 4.177 26 C -0.168 4.168 27 N -0.541 5.541 28 C 0.183 3.817 29 H 0.260 0.740 30 H 0.366 0.634 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.367 0.633 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.407 0.593 37 H 0.154 0.846 38 H 0.147 0.853 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.558 -1.331 15.372 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.185 4.185 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.109 0.891 9 N -0.382 5.382 10 C 0.060 3.940 11 H 0.093 0.907 12 C -0.022 4.022 13 O -0.369 6.369 14 C -0.008 4.008 15 N -0.363 5.363 16 C 0.351 3.649 17 O -0.428 6.428 18 C -0.229 4.229 19 C -0.010 4.010 20 C -0.220 4.220 21 C 0.163 3.837 22 O -0.207 6.207 23 C 0.025 3.975 24 C -0.178 4.178 25 C -0.214 4.214 26 C -0.205 4.205 27 N -0.265 5.265 28 C 0.025 3.975 29 H 0.071 0.929 30 H 0.199 0.801 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.212 0.788 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.244 0.756 37 H 0.172 0.828 38 H 0.165 0.835 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 11.417 -0.986 16.193 19.837 hybrid contribution 0.517 0.858 -0.900 1.346 sum 11.934 -0.128 15.293 19.398 Atomic orbital electron populations 1.69694 1.05123 1.25993 1.56789 1.24635 0.95135 0.97171 1.01531 0.86593 0.79114 0.84983 0.78025 1.21023 1.21813 1.20286 1.19036 0.80369 0.94701 1.44051 0.89110 1.42746 1.03904 1.01790 1.89793 1.20586 0.90423 0.90635 0.92350 0.90679 1.22986 0.93884 0.90423 0.94877 1.86515 1.72343 1.52040 1.25995 1.21641 0.98498 0.98480 0.82218 1.45945 1.09191 1.62960 1.18219 1.17847 0.84665 0.78267 0.84171 1.90748 1.25607 1.54226 1.72171 1.20882 0.95153 1.09214 0.97681 1.21500 0.99447 0.89244 0.90788 1.21009 0.95696 1.07271 0.98065 1.20060 0.90092 0.88705 0.84884 1.86162 1.30732 1.75173 1.28652 1.22211 0.80708 1.00832 0.93790 1.22153 0.98341 1.04286 0.93052 1.23126 1.03787 0.96239 0.98204 1.23014 0.95092 0.99052 1.03369 1.67373 1.32843 1.18215 1.08029 1.22803 0.96613 0.88683 0.89351 0.92949 0.80063 0.95066 0.92723 0.78827 0.90405 0.91422 0.75562 0.82827 0.83484 0.90693 0.91013 0.86696 0.88420 0.88466 0.88159 0.88203 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.94 13.97 55.49 0.78 -27.16 16 2 C 0.01 0.33 5.50 -17.43 -0.10 0.24 16 3 Si 0.88 21.75 27.74 -169.99 -4.71 17.04 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 7 C -0.25 -6.55 10.41 -15.06 -0.16 -6.71 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 N -0.74 -16.12 4.31 -53.42 -0.23 -16.35 16 10 C 0.17 2.99 2.84 -67.93 -0.19 2.80 16 11 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 12 C 0.06 0.95 6.86 37.15 0.25 1.21 16 13 O -0.57 -9.18 12.64 -35.23 -0.45 -9.63 16 14 C 0.12 1.88 5.12 -4.04 -0.02 1.86 16 15 N -0.71 -11.29 5.34 -61.32 -0.33 -11.61 16 16 C 0.56 9.11 7.77 -12.43 -0.10 9.01 16 17 O -0.55 -10.20 16.41 5.30 0.09 -10.11 16 18 C -0.22 -3.13 5.89 -104.82 -0.62 -3.75 16 19 C 0.02 0.19 9.70 -38.92 -0.38 -0.18 16 20 C -0.20 -2.24 10.02 -39.34 -0.39 -2.63 16 21 C 0.34 4.37 7.49 -16.95 -0.13 4.25 16 22 O -0.30 -3.57 10.10 -18.20 -0.18 -3.76 16 23 C 0.10 1.04 5.58 37.16 0.21 1.24 16 24 C -0.16 -1.34 6.05 -90.62 -0.55 -1.89 16 25 C -0.18 -1.26 10.18 -26.69 -0.27 -1.53 16 26 C -0.17 -1.19 10.25 -26.69 -0.27 -1.46 16 27 N -0.54 -7.54 9.18 -12.96 -0.12 -7.66 16 28 C 0.18 2.53 10.71 -17.15 -0.18 2.34 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.37 8.34 5.66 -40.82 -0.23 8.11 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 33 H 0.37 4.20 9.12 45.56 0.42 4.62 16 34 H 0.08 1.41 7.39 -51.93 -0.38 1.03 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.41 6.32 6.19 -40.82 -0.25 6.06 16 37 H 0.15 1.68 7.73 -52.49 -0.41 1.28 16 38 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 40 H 0.07 0.76 7.83 -51.93 -0.41 0.35 16 41 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.10 0.69 8.03 -51.93 -0.42 0.28 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.17 2.17 6.41 -52.49 -0.34 1.84 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -33.16 390.77 -8.00 -41.16 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -5.83 Total: 17.42 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -2.90 Total: 4.78 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.10 Total: -62.78 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.54 Total: -23.50 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.16 -8.00 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734386442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.718 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds