Wall clock time and date at job start Tue Mar 31 2020 18:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00078 * 2 1 4 4 H 1.48507 * 109.46724 * 269.99633 * 3 2 1 5 5 H 1.48497 * 109.46930 * 29.99278 * 3 2 1 6 6 H 1.48492 * 109.47255 * 149.99461 * 3 2 1 7 7 C 1.38813 * 119.99999 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00002 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99904 * 180.02562 * 7 2 1 10 10 C 1.46505 * 120.00082 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46464 * 324.99086 * 10 9 7 12 12 C 1.52994 * 109.47412 * 84.99392 * 10 9 7 13 13 O 1.42895 * 109.47324 * 65.00129 * 12 10 9 14 14 C 1.53002 * 109.46727 * 204.99676 * 10 9 7 15 15 N 1.46498 * 109.47525 * 54.99850 * 14 10 9 16 16 C 1.34777 * 119.99936 * 180.02562 * 15 14 10 17 17 O 1.21574 * 119.99955 * 359.97438 * 16 15 14 18 18 C 1.47621 * 119.99737 * 179.97438 * 16 15 14 19 19 C 1.40284 * 120.49597 * 179.97438 * 18 16 15 20 20 C 1.37945 * 118.35665 * 180.29822 * 19 18 16 21 21 C 1.39179 * 119.26241 * 359.47752 * 20 19 18 22 22 O 1.35503 * 119.52559 * 180.27813 * 21 20 19 23 23 C 1.42899 * 117.00012 * 180.25456 * 22 21 20 24 24 C 1.53000 * 109.47320 * 179.97438 * 23 22 21 25 25 C 1.52996 * 117.49689 * 243.74731 * 24 23 22 26 26 C 1.52995 * 117.49877 * 175.08427 * 24 23 22 27 27 N 1.32407 * 120.94583 * 0.53199 * 21 20 19 28 28 C 1.31661 * 121.80173 * 359.72709 * 27 21 20 29 29 H 0.96999 * 119.99969 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00191 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.46960 * 185.00277 * 12 10 9 32 32 H 1.09007 * 109.47127 * 304.99954 * 12 10 9 33 33 H 0.96701 * 114.00258 * 180.02562 * 13 12 10 34 34 H 1.08994 * 109.47189 * 294.99262 * 14 10 9 35 35 H 1.09001 * 109.46454 * 174.99740 * 14 10 9 36 36 H 0.96996 * 119.99494 * 359.97438 * 15 14 10 37 37 H 1.08002 * 120.81900 * 0.02562 * 19 18 16 38 38 H 1.08000 * 120.37265 * 179.69550 * 20 19 18 39 39 H 1.09002 * 109.46969 * 300.00333 * 23 22 21 40 40 H 1.08997 * 109.47093 * 59.99720 * 23 22 21 41 41 H 1.08999 * 115.54553 * 29.41376 * 24 23 22 42 42 H 1.09000 * 117.50191 * 359.97438 * 25 24 23 43 43 H 1.09001 * 117.50045 * 145.02169 * 25 24 23 44 44 H 1.08995 * 117.50159 * 214.97730 * 26 24 23 45 45 H 1.09005 * 117.50127 * 0.02562 * 26 24 23 46 46 H 1.07995 * 119.68739 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4709 0.0011 11 1 3.5646 -3.2065 0.5903 12 6 4.2588 -2.9752 -1.4359 13 8 5.0752 -2.0674 -2.1784 14 6 5.4992 -2.2588 0.6112 15 7 5.3612 -1.6640 1.9429 16 6 6.4589 -1.3859 2.6737 17 8 7.5636 -1.6292 2.2281 18 6 6.3199 -0.7859 4.0153 19 6 7.4553 -0.4927 4.7852 20 6 7.2740 0.0616 6.0353 21 6 5.9822 0.3201 6.4841 22 8 5.7982 0.8697 7.7089 23 6 4.4496 1.1070 8.1175 24 6 4.4420 1.7257 9.5168 25 6 3.7920 0.9188 10.6425 26 6 3.0919 2.1624 10.0888 27 7 4.9302 0.0320 5.7334 28 6 5.0572 -0.5024 4.5368 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 4.7246 -3.9606 -1.4293 32 1 3.2746 -3.0416 -1.8999 33 1 5.2109 -2.3246 -3.1007 34 1 6.0785 -1.5915 -0.0266 35 1 6.0105 -3.2180 0.6930 36 1 4.4798 -1.4695 2.2982 37 1 8.4467 -0.7000 4.4102 38 1 8.1252 0.2957 6.6575 39 1 3.9719 1.7901 7.4151 40 1 3.9039 0.1636 8.1349 41 1 5.3142 2.3289 9.7687 42 1 3.3693 -0.0526 10.3862 43 1 4.2362 0.9915 11.6352 44 1 3.0758 3.0527 10.7174 45 1 2.2089 2.0085 9.4684 46 1 4.1756 -0.7239 3.9537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734386442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:39 Heat of formation + Delta-G solvation = -70.196671 kcal Electronic energy + Delta-G solvation = -28238.542999 eV Core-core repulsion = 24129.045309 eV Total energy + Delta-G solvation = -4109.497690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.99201 -40.70089 -39.28866 -38.62730 -37.67119 -36.46680 -35.32048 -33.68804 -33.51339 -32.12758 -30.47447 -28.71821 -26.80223 -25.37538 -25.10533 -24.25454 -23.30168 -21.82844 -21.63654 -21.60432 -19.98605 -19.68194 -18.68668 -18.36259 -18.19634 -17.35932 -17.05813 -16.68537 -16.28475 -16.18723 -16.15608 -15.76165 -15.23995 -15.07944 -15.02239 -14.70117 -14.60134 -14.45387 -14.32012 -14.20420 -14.10040 -13.79562 -13.21325 -12.86964 -12.65502 -12.61754 -12.40430 -12.34551 -12.29310 -11.89136 -11.78412 -11.47355 -11.35066 -11.13277 -11.03425 -10.99001 -10.73617 -10.70444 -10.15862 -9.66949 -9.32597 -8.00640 -5.32629 -0.43206 0.06642 1.37168 1.41063 1.45499 1.74281 1.75538 2.13105 2.48159 2.69334 2.80461 3.03481 3.31650 3.46416 3.60186 3.67377 3.70963 3.74119 3.87427 3.89049 3.93093 3.98288 4.15001 4.19227 4.40047 4.42329 4.52270 4.53685 4.56124 4.62545 4.68537 4.75185 4.81780 4.97064 4.97477 5.00584 5.10698 5.18711 5.20451 5.25727 5.41302 5.79683 6.03165 6.22982 6.45691 6.57194 7.03818 7.09957 7.10819 7.84231 8.02853 9.20214 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010438 B = 0.003014 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.953703 B = 9287.938367 C =11266.931226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.051 4.051 3 Si 0.940 3.060 4 H -0.290 1.290 5 H -0.300 1.300 6 H -0.258 1.258 7 C -0.219 4.219 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.164 3.836 11 H 0.083 0.917 12 C 0.066 3.934 13 O -0.584 6.584 14 C 0.127 3.873 15 N -0.712 5.712 16 C 0.567 3.433 17 O -0.575 6.575 18 C -0.235 4.235 19 C 0.018 3.982 20 C -0.187 4.187 21 C 0.332 3.668 22 O -0.301 6.301 23 C 0.099 3.901 24 C -0.171 4.171 25 C -0.173 4.173 26 C -0.164 4.164 27 N -0.557 5.557 28 C 0.178 3.822 29 H 0.256 0.744 30 H 0.363 0.637 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.388 0.612 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.409 0.591 37 H 0.168 0.832 38 H 0.178 0.822 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.660 -1.437 16.523 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.243 4.243 3 Si 0.770 3.230 4 H -0.217 1.217 5 H -0.227 1.227 6 H -0.183 1.183 7 C -0.350 4.350 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.056 3.944 11 H 0.101 0.899 12 C -0.015 4.015 13 O -0.391 6.391 14 C 0.003 3.997 15 N -0.363 5.363 16 C 0.355 3.645 17 O -0.456 6.456 18 C -0.240 4.240 19 C -0.007 4.007 20 C -0.207 4.207 21 C 0.153 3.847 22 O -0.208 6.208 23 C 0.024 3.976 24 C -0.189 4.189 25 C -0.209 4.209 26 C -0.201 4.201 27 N -0.281 5.281 28 C 0.020 3.980 29 H 0.065 0.935 30 H 0.196 0.804 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.236 0.764 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.246 0.754 37 H 0.185 0.815 38 H 0.195 0.805 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.137 0.863 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.115 0.885 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.569 -1.130 17.337 22.045 hybrid contribution -0.091 0.781 -1.233 1.462 sum 13.478 -0.349 16.104 21.003 Atomic orbital electron populations 1.69836 1.06775 1.26305 1.59950 1.25237 0.95715 1.00228 1.03167 0.85639 0.78598 0.81274 0.77491 1.21728 1.22672 1.18282 1.19015 0.82106 0.93484 1.40383 0.91235 1.42728 1.02421 1.03416 1.89824 1.20855 0.90765 0.88870 0.93937 0.89878 1.22796 0.93508 0.92041 0.93170 1.86459 1.72107 1.52690 1.27828 1.21503 0.97228 0.99015 0.82000 1.45953 1.09340 1.62896 1.18090 1.18083 0.84120 0.77678 0.84669 1.90729 1.26424 1.55517 1.72933 1.20781 0.95962 1.10269 0.97031 1.21694 0.99458 0.88709 0.90840 1.21291 0.95961 1.05714 0.97773 1.20388 0.90571 0.88638 0.85095 1.86173 1.31497 1.74902 1.28191 1.22276 0.80013 1.00463 0.94816 1.22135 0.99322 1.05235 0.92212 1.23209 1.03241 0.96152 0.98329 1.23108 0.94198 0.99677 1.03087 1.67354 1.33768 1.18781 1.08231 1.22808 0.96704 0.88959 0.89492 0.93526 0.80428 0.91195 0.94667 0.76365 0.91976 0.89525 0.75399 0.81494 0.80493 0.91736 0.91547 0.86288 0.88627 0.87074 0.86707 0.88470 0.81388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.19 13.97 21.65 0.30 -59.89 16 2 C -0.05 -2.89 5.50 84.86 0.47 -2.42 16 3 Si 0.94 45.30 27.74 68.60 1.90 47.20 16 4 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 6 H -0.26 -11.42 6.52 99.48 0.65 -10.78 16 7 C -0.22 -11.40 10.41 84.03 0.87 -10.53 16 8 H 0.07 3.90 8.06 -2.91 -0.02 3.87 16 9 N -0.74 -31.57 4.31 -322.94 -1.39 -32.96 16 10 C 0.16 5.48 2.84 44.99 0.13 5.61 16 11 H 0.08 2.67 8.08 -2.39 -0.02 2.65 16 12 C 0.07 1.95 6.86 71.98 0.49 2.45 16 13 O -0.58 -17.69 12.64 -148.98 -1.88 -19.58 16 14 C 0.13 3.89 5.12 86.38 0.44 4.33 16 15 N -0.71 -21.66 5.34 -466.20 -2.49 -24.15 16 16 C 0.57 17.60 7.77 86.72 0.67 18.27 16 17 O -0.57 -20.59 16.41 -3.95 -0.06 -20.65 16 18 C -0.23 -6.30 5.89 -19.99 -0.12 -6.42 16 19 C 0.02 0.41 9.70 22.70 0.22 0.63 16 20 C -0.19 -3.76 10.02 22.43 0.22 -3.53 16 21 C 0.33 8.06 7.49 84.83 0.64 8.70 16 22 O -0.30 -6.79 10.10 -88.04 -0.89 -7.68 16 23 C 0.10 2.01 5.58 71.98 0.40 2.41 16 24 C -0.17 -2.65 6.05 -10.80 -0.07 -2.71 16 25 C -0.17 -2.20 10.18 30.62 0.31 -1.88 16 26 C -0.16 -2.08 10.25 30.62 0.31 -1.76 16 27 N -0.56 -15.20 9.18 -307.81 -2.82 -18.02 16 28 C 0.18 4.80 10.71 85.03 0.91 5.71 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.36 16.02 5.66 -92.70 -0.52 15.49 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.39 7.97 9.12 -74.06 -0.68 7.29 16 34 H 0.06 2.15 7.39 -2.39 -0.02 2.13 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.41 12.30 6.19 -92.71 -0.57 11.72 16 37 H 0.17 3.27 7.73 -2.91 -0.02 3.25 16 38 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 39 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 40 H 0.07 1.39 7.83 -2.39 -0.02 1.37 16 41 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.10 1.25 8.03 -2.39 -0.02 1.23 16 43 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.17 4.34 6.41 -2.91 -0.02 4.32 16 Total: -1.00 -71.09 390.77 -2.23 -73.32 By element: Atomic # 1 Polarization: 44.38 SS G_CDS: -0.80 Total: 43.58 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 5.91 Total: 18.84 kcal Atomic # 7 Polarization: -128.62 SS G_CDS: -6.40 Total: -135.03 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -2.84 Total: -47.91 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Total: -71.09 -2.23 -73.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734386442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.120 kcal (2) G-P(sol) polarization free energy of solvation -71.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds