Wall clock time and date at job start Tue Mar 31 2020 18:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99889 * 2 1 4 4 H 1.48497 * 109.47173 * 179.72400 * 3 2 1 5 5 H 1.48506 * 109.46866 * 299.71936 * 3 2 1 6 6 H 1.48501 * 109.47438 * 59.72056 * 3 2 1 7 7 C 1.38955 * 119.99820 * 179.71718 * 2 1 3 8 8 H 1.08000 * 119.99307 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99974 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99808 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00325 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99849 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.46873 * 179.97438 * 14 13 12 16 16 H 1.08995 * 110.43314 * 307.54160 * 15 14 13 17 17 C 1.54883 * 110.48370 * 70.22690 * 15 14 13 18 18 C 1.54890 * 102.74733 * 156.62202 * 17 15 14 19 19 C 1.54266 * 104.19444 * 322.05422 * 18 17 15 20 20 H 1.09002 * 110.07601 * 142.91790 * 19 18 17 21 21 N 1.46502 * 110.03433 * 264.32715 * 19 18 17 22 22 C 1.34783 * 119.99766 * 272.16717 * 21 19 18 23 23 O 1.21689 * 120.00240 * 359.97438 * 22 21 19 24 24 C 1.46658 * 119.99764 * 180.02562 * 22 21 19 25 25 C 1.36540 * 125.98809 * 179.71810 * 24 22 21 26 26 C 1.40359 * 106.71092 * 179.90499 * 25 24 22 27 27 C 1.35134 * 107.11298 * 0.35064 * 26 25 24 28 28 O 1.33927 * 108.76796 * 359.78194 * 27 26 25 29 29 C 1.53876 * 106.60004 * 23.60916 * 19 18 17 30 30 H 0.97000 * 120.00377 * 0.27775 * 1 2 3 31 31 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47128 * 300.00456 * 12 10 9 33 33 H 1.08999 * 109.47436 * 59.99595 * 12 10 9 34 34 H 1.00897 * 110.99542 * 56.04436 * 13 12 10 35 35 H 1.09007 * 109.47386 * 299.99895 * 14 13 12 36 36 H 1.09001 * 109.47554 * 60.00131 * 14 13 12 37 37 H 1.09004 * 110.75760 * 274.93030 * 17 15 14 38 38 H 1.08998 * 110.76127 * 38.30804 * 17 15 14 39 39 H 1.09000 * 110.48807 * 203.37879 * 18 17 15 40 40 H 1.09001 * 110.60392 * 80.79059 * 18 17 15 41 41 H 0.96999 * 120.00142 * 92.16183 * 21 19 18 42 42 H 1.08000 * 126.64397 * 0.03629 * 25 24 22 43 43 H 1.08000 * 126.44941 * 180.11098 * 26 25 24 44 44 H 1.08003 * 125.61519 * 179.77597 * 27 26 25 45 45 H 1.08995 * 110.03505 * 240.72055 * 29 19 18 46 46 H 1.08999 * 110.03260 * 119.28261 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 0.0067 5 1 1.8944 2.3934 -1.2160 6 1 1.8843 2.3994 1.2091 7 6 2.0089 -1.2034 0.0059 8 1 3.0889 -1.2033 0.0064 9 7 1.3234 -2.3906 0.0113 10 6 1.9973 -3.5578 0.0165 11 8 3.2102 -3.5578 0.0170 12 6 1.2438 -4.8629 0.0230 13 7 2.1985 -5.9795 0.0285 14 6 1.4981 -7.2708 0.0354 15 6 2.5231 -8.4068 0.0404 16 1 3.2395 -8.2764 -0.7706 17 6 3.2516 -8.4735 1.4056 18 6 3.7417 -9.9419 1.4600 19 6 2.5906 -10.7486 0.8244 20 1 2.9925 -11.5686 0.2292 21 7 1.7085 -11.2733 1.8698 22 6 1.9746 -12.4649 2.4407 23 8 2.9473 -13.1051 2.0875 24 6 1.0912 -12.9903 3.4868 25 6 1.2409 -14.1795 4.1408 26 6 0.1786 -14.2750 5.0531 27 6 -0.5681 -13.1575 4.9123 28 8 -0.0151 -12.3859 3.9677 29 6 1.8157 -9.7726 -0.0782 30 1 -0.4851 0.8400 -0.0041 31 1 0.3533 -2.3906 0.0113 32 1 0.6174 -4.9165 0.9134 33 1 0.6168 -4.9249 -0.8664 34 1 2.8333 -5.9085 0.8095 35 1 0.8735 -7.3406 0.9261 36 1 0.8729 -7.3499 -0.8539 37 1 4.0953 -7.7837 1.4274 38 1 2.5607 -8.2664 2.2227 39 1 3.9008 -10.2529 2.4925 40 1 4.6572 -10.0624 0.8809 41 1 0.9329 -10.7631 2.1511 42 1 2.0260 -14.9051 3.9873 43 1 -0.0092 -15.0901 5.7362 44 1 -1.4635 -12.9251 5.4697 45 1 0.7835 -9.6892 0.2616 46 1 1.8424 -10.1183 -1.1115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734466860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:01 Heat of formation + Delta-G solvation = -66.214827 kcal Electronic energy + Delta-G solvation = -27458.408190 eV Core-core repulsion = 23349.083166 eV Total energy + Delta-G solvation = -4109.325024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.11604 -40.24648 -38.60484 -38.03737 -35.49208 -34.04262 -33.67675 -33.30755 -31.23249 -30.61181 -29.69392 -28.51016 -26.47403 -24.49444 -23.75267 -22.90262 -22.22708 -21.00896 -20.52232 -19.96617 -19.21028 -18.84047 -17.87727 -16.95359 -16.74294 -16.62900 -16.11837 -15.85385 -15.43355 -14.93470 -14.64255 -14.49942 -14.24051 -13.89149 -13.73940 -13.56452 -13.47516 -13.45150 -13.15411 -12.96860 -12.91391 -12.08683 -11.99900 -11.80513 -11.57144 -11.48863 -11.22773 -11.06180 -10.98744 -10.74623 -10.64202 -10.55953 -10.52997 -10.34240 -10.22177 -9.52999 -9.51869 -9.11085 -8.45465 -8.04539 -7.95471 -6.41807 -3.82493 0.62399 1.90133 2.23272 2.78777 2.83061 3.16394 3.26926 3.34402 3.91317 4.07064 4.19057 4.25246 4.32421 4.43958 4.48529 4.58312 4.70917 5.06876 5.14271 5.18776 5.20266 5.21180 5.26910 5.30515 5.31429 5.42305 5.43603 5.45986 5.56063 5.64974 5.77550 5.79688 5.84446 5.89443 5.94293 5.99569 6.06180 6.19552 6.25261 6.32369 6.37803 7.06902 7.24303 7.55514 7.68808 7.69352 8.06911 8.61547 9.18186 9.54673 10.06195 10.76055 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.001672 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.395454 B =16745.344213 C =17478.057976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.067 3.933 15 C -0.089 4.089 16 H 0.091 0.909 17 C -0.124 4.124 18 C -0.132 4.132 19 C 0.140 3.860 20 H 0.094 0.906 21 N -0.710 5.710 22 C 0.603 3.397 23 O -0.520 6.520 24 C -0.081 4.081 25 C -0.120 4.120 26 C -0.226 4.226 27 C -0.005 4.005 28 O -0.164 6.164 29 C -0.125 4.125 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.349 0.651 35 H 0.026 0.974 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.405 0.595 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.073 0.927 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.311 -27.639 7.818 29.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.301 5.301 14 C -0.063 4.063 15 C -0.108 4.108 16 H 0.109 0.891 17 C -0.162 4.162 18 C -0.170 4.170 19 C 0.036 3.964 20 H 0.112 0.888 21 N -0.361 5.361 22 C 0.389 3.611 23 O -0.398 6.398 24 C -0.133 4.133 25 C -0.141 4.141 26 C -0.245 4.245 27 C -0.075 4.075 28 O -0.059 6.059 29 C -0.163 4.163 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.168 0.832 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.240 0.760 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.228 0.772 45 H 0.091 0.909 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.923 -27.607 6.738 28.567 hybrid contribution -1.148 0.881 1.282 1.933 sum -4.070 -26.726 8.020 28.199 Atomic orbital electron populations 1.69621 1.05941 1.28035 1.50777 1.25266 0.95640 0.99732 0.97366 0.85796 0.79721 0.81116 0.77686 1.19211 1.20742 1.20792 1.19764 0.93419 0.82243 1.47403 0.87854 1.41873 1.09193 1.04625 1.64441 1.19832 0.88402 0.84744 0.84402 1.90523 1.13766 1.87079 1.55327 1.21671 0.94400 0.91064 1.01106 1.60075 1.18814 0.99881 1.51338 1.22009 0.95149 0.88970 1.00171 1.22023 0.97532 0.92629 0.98612 0.89086 1.22628 1.00453 0.96243 0.96840 1.22764 0.97807 0.95114 1.01348 1.21738 0.90212 0.96603 0.87889 0.88778 1.46142 1.30177 1.20108 1.39700 1.16566 0.83362 0.81294 0.79913 1.90891 1.27595 1.59065 1.62264 1.22142 0.91482 0.96275 1.03406 1.22005 0.99920 0.96507 0.95667 1.21894 0.97498 1.01003 1.04123 1.24463 0.99870 0.90996 0.92180 1.84070 1.33672 1.44300 1.43897 1.22486 0.99469 0.94416 0.99935 0.91945 0.77478 0.94022 0.89647 0.83158 0.95635 0.91116 0.90563 0.91713 0.91349 0.90320 0.75977 0.82207 0.82516 0.77234 0.90851 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 10 C 0.44 10.45 7.82 -10.99 -0.09 10.36 16 11 O -0.58 -15.91 15.78 5.54 0.09 -15.83 16 12 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 13 N -0.67 -10.58 6.13 -115.05 -0.70 -11.29 16 14 C 0.07 0.76 5.02 -3.82 -0.02 0.75 16 15 C -0.09 -0.86 3.09 -88.96 -0.27 -1.14 16 16 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.12 -1.20 5.69 -24.74 -0.14 -1.34 16 18 C -0.13 -1.21 6.54 -25.07 -0.16 -1.37 16 19 C 0.14 1.20 3.25 -66.81 -0.22 0.98 16 20 H 0.09 0.89 7.56 -51.93 -0.39 0.50 16 21 N -0.71 -6.01 5.03 -54.03 -0.27 -6.28 16 22 C 0.60 6.32 7.78 -12.86 -0.10 6.22 16 23 O -0.52 -6.99 16.52 5.20 0.09 -6.91 16 24 C -0.08 -0.75 7.13 -36.80 -0.26 -1.01 16 25 C -0.12 -0.99 10.62 -39.40 -0.42 -1.41 16 26 C -0.23 -1.35 10.87 -39.89 -0.43 -1.78 16 27 C -0.01 -0.03 12.08 29.63 0.36 0.33 16 28 O -0.16 -1.28 10.40 5.00 0.05 -1.23 16 29 C -0.12 -0.96 6.14 -25.61 -0.16 -1.12 16 30 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.35 5.73 7.72 -39.29 -0.30 5.43 16 35 H 0.03 0.27 8.02 -51.93 -0.42 -0.14 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.81 8.05 -51.93 -0.42 0.40 16 38 H 0.06 0.62 7.97 -51.93 -0.41 0.21 16 39 H 0.07 0.68 8.04 -51.93 -0.42 0.27 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.40 2.79 8.08 -40.82 -0.33 2.46 16 42 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.21 0.28 8.06 -52.48 -0.42 -0.14 16 45 H 0.07 0.51 7.31 -51.93 -0.38 0.13 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -33.84 389.57 -8.13 -41.97 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -6.71 Total: 13.59 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.19 Total: 2.29 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.31 Total: -55.82 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.23 Total: -23.96 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.84 -8.13 -41.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734466860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.241 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds