Wall clock time and date at job start Tue Mar 31 2020 18:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 119.99889 * 2 1 4 4 H 1.48497 * 109.47173 * 179.72400 * 3 2 1 5 5 H 1.48506 * 109.46866 * 299.71936 * 3 2 1 6 6 H 1.48501 * 109.47438 * 59.72056 * 3 2 1 7 7 C 1.38955 * 119.99820 * 179.71718 * 2 1 3 8 8 H 1.08000 * 119.99307 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00110 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99974 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99808 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00325 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47398 * 180.02562 * 12 10 9 14 14 C 1.46898 * 110.99849 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.46873 * 179.97438 * 14 13 12 16 16 H 1.08995 * 110.43314 * 307.54160 * 15 14 13 17 17 C 1.54883 * 110.48370 * 70.22690 * 15 14 13 18 18 C 1.54890 * 102.74733 * 156.62202 * 17 15 14 19 19 C 1.54266 * 104.19444 * 322.05422 * 18 17 15 20 20 H 1.09002 * 110.07601 * 142.91790 * 19 18 17 21 21 N 1.46502 * 110.03433 * 264.32715 * 19 18 17 22 22 C 1.34783 * 119.99766 * 272.16717 * 21 19 18 23 23 O 1.21689 * 120.00240 * 359.97438 * 22 21 19 24 24 C 1.46658 * 119.99764 * 180.02562 * 22 21 19 25 25 C 1.36540 * 125.98809 * 179.71810 * 24 22 21 26 26 C 1.40359 * 106.71092 * 179.90499 * 25 24 22 27 27 C 1.35134 * 107.11298 * 0.35064 * 26 25 24 28 28 O 1.33927 * 108.76796 * 359.78194 * 27 26 25 29 29 C 1.53876 * 106.60004 * 23.60916 * 19 18 17 30 30 H 0.97000 * 120.00377 * 0.27775 * 1 2 3 31 31 H 0.97005 * 120.00185 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47128 * 300.00456 * 12 10 9 33 33 H 1.08999 * 109.47436 * 59.99595 * 12 10 9 34 34 H 1.00897 * 110.99542 * 56.04436 * 13 12 10 35 35 H 1.09007 * 109.47386 * 299.99895 * 14 13 12 36 36 H 1.09001 * 109.47554 * 60.00131 * 14 13 12 37 37 H 1.09004 * 110.75760 * 274.93030 * 17 15 14 38 38 H 1.08998 * 110.76127 * 38.30804 * 17 15 14 39 39 H 1.09000 * 110.48807 * 203.37879 * 18 17 15 40 40 H 1.09001 * 110.60392 * 80.79059 * 18 17 15 41 41 H 0.96999 * 120.00142 * 92.16183 * 21 19 18 42 42 H 1.08000 * 126.64397 * 0.03629 * 25 24 22 43 43 H 1.08000 * 126.44941 * 180.11098 * 26 25 24 44 44 H 1.08003 * 125.61519 * 179.77597 * 27 26 25 45 45 H 1.08995 * 110.03505 * 240.72055 * 29 19 18 46 46 H 1.08999 * 110.03260 * 119.28261 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 0.0067 5 1 1.8944 2.3934 -1.2160 6 1 1.8843 2.3994 1.2091 7 6 2.0089 -1.2034 0.0059 8 1 3.0889 -1.2033 0.0064 9 7 1.3234 -2.3906 0.0113 10 6 1.9973 -3.5578 0.0165 11 8 3.2102 -3.5578 0.0170 12 6 1.2438 -4.8629 0.0230 13 7 2.1985 -5.9795 0.0285 14 6 1.4981 -7.2708 0.0354 15 6 2.5231 -8.4068 0.0404 16 1 3.2395 -8.2764 -0.7706 17 6 3.2516 -8.4735 1.4056 18 6 3.7417 -9.9419 1.4600 19 6 2.5906 -10.7486 0.8244 20 1 2.9925 -11.5686 0.2292 21 7 1.7085 -11.2733 1.8698 22 6 1.9746 -12.4649 2.4407 23 8 2.9473 -13.1051 2.0875 24 6 1.0912 -12.9903 3.4868 25 6 1.2409 -14.1795 4.1408 26 6 0.1786 -14.2750 5.0531 27 6 -0.5681 -13.1575 4.9123 28 8 -0.0151 -12.3859 3.9677 29 6 1.8157 -9.7726 -0.0782 30 1 -0.4851 0.8400 -0.0041 31 1 0.3533 -2.3906 0.0113 32 1 0.6174 -4.9165 0.9134 33 1 0.6168 -4.9249 -0.8664 34 1 2.8333 -5.9085 0.8095 35 1 0.8735 -7.3406 0.9261 36 1 0.8729 -7.3499 -0.8539 37 1 4.0953 -7.7837 1.4274 38 1 2.5607 -8.2664 2.2227 39 1 3.9008 -10.2529 2.4925 40 1 4.6572 -10.0624 0.8809 41 1 0.9329 -10.7631 2.1511 42 1 2.0260 -14.9051 3.9873 43 1 -0.0092 -15.0901 5.7362 44 1 -1.4635 -12.9251 5.4697 45 1 0.7835 -9.6892 0.2616 46 1 1.8424 -10.1183 -1.1115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734466860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:00 Heat of formation + Delta-G solvation = -91.575276 kcal Electronic energy + Delta-G solvation = -27459.507902 eV Core-core repulsion = 23349.083166 eV Total energy + Delta-G solvation = -4110.424736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.64520 -41.01887 -40.16158 -39.18315 -36.67028 -35.84962 -34.62045 -33.97168 -33.25715 -31.33627 -30.54343 -29.33076 -27.90180 -26.06779 -24.48391 -24.01641 -22.73217 -21.68094 -21.38083 -21.00039 -20.65665 -19.89684 -19.47614 -17.97898 -17.53698 -17.31213 -17.11361 -16.98570 -16.68909 -16.35515 -15.90478 -15.65246 -15.51724 -15.26363 -14.83758 -14.59486 -14.33942 -14.14782 -14.04899 -13.95256 -13.59401 -13.52267 -13.37883 -13.06250 -12.80614 -12.76243 -12.55272 -12.40710 -12.11911 -11.99015 -11.80610 -11.57912 -11.52084 -11.47519 -11.35625 -11.06125 -10.34069 -10.27923 -10.01280 -9.65050 -9.28054 -8.46885 -5.95512 0.01294 1.36747 1.41788 1.42142 1.56343 1.65818 2.05615 2.07128 2.20674 2.29607 2.95223 3.20518 3.51463 3.52246 3.68079 3.74502 3.92259 3.95008 4.11551 4.31729 4.34016 4.38393 4.48962 4.51020 4.54585 4.59107 4.61219 4.62456 4.68414 4.85452 4.86417 4.89881 4.95416 5.02430 5.10329 5.13004 5.28245 5.37777 5.41240 5.46567 5.52162 5.83170 5.91722 6.14572 6.39978 6.45099 6.60499 6.97579 7.12916 7.56623 8.12158 8.70724 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.001672 C = 0.001602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.395454 B =16745.344213 C =17478.057976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.685 5.685 14 C 0.069 3.931 15 C -0.083 4.083 16 H 0.078 0.922 17 C -0.120 4.120 18 C -0.128 4.128 19 C 0.142 3.858 20 H 0.085 0.915 21 N -0.699 5.699 22 C 0.600 3.400 23 O -0.561 6.561 24 C -0.111 4.111 25 C -0.128 4.128 26 C -0.236 4.236 27 C 0.010 3.990 28 O -0.171 6.171 29 C -0.113 4.113 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.343 0.657 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.414 0.586 42 H 0.157 0.843 43 H 0.182 0.818 44 H 0.253 0.747 45 H 0.089 0.911 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 -28.071 8.542 30.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.068 4.068 13 N -0.318 5.318 14 C -0.060 4.060 15 C -0.102 4.102 16 H 0.097 0.903 17 C -0.158 4.158 18 C -0.167 4.167 19 C 0.038 3.962 20 H 0.103 0.897 21 N -0.350 5.350 22 C 0.388 3.612 23 O -0.442 6.442 24 C -0.163 4.163 25 C -0.149 4.149 26 C -0.254 4.254 27 C -0.060 4.060 28 O -0.066 6.066 29 C -0.151 4.151 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.161 0.839 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.251 0.749 42 H 0.175 0.825 43 H 0.199 0.801 44 H 0.269 0.731 45 H 0.107 0.893 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.137 -28.040 7.459 29.466 hybrid contribution -0.512 0.943 1.122 1.552 sum -5.649 -27.096 8.581 28.979 Atomic orbital electron populations 1.69674 1.06792 1.29238 1.50389 1.26036 0.96559 1.02385 0.96277 0.84868 0.77994 0.77105 0.78344 1.19892 1.19585 1.19550 1.19709 0.92706 0.84104 1.49884 0.90399 1.41940 1.09341 1.04715 1.65085 1.20955 0.88284 0.86266 0.82110 1.90492 1.15949 1.87999 1.56639 1.21537 0.94054 0.88097 1.03068 1.60087 1.19150 1.01105 1.51408 1.22108 0.95464 0.87061 1.01356 1.21928 0.97103 0.93193 0.97995 0.90310 1.22569 1.00069 0.95994 0.97137 1.22708 0.98180 0.94984 1.00795 1.21678 0.90215 0.96380 0.87922 0.89695 1.46061 1.30192 1.19576 1.39179 1.16770 0.83078 0.81388 0.79995 1.90857 1.29361 1.60220 1.63761 1.21908 0.92699 0.97141 1.04510 1.22261 1.00501 0.96163 0.95966 1.22224 0.96800 1.02220 1.04193 1.25371 1.00077 0.89983 0.90537 1.84060 1.33250 1.44738 1.44564 1.22397 0.99745 0.92580 1.00371 0.91290 0.76933 0.91608 0.87756 0.83870 0.93980 0.90129 0.92013 0.91303 0.92354 0.90457 0.74879 0.82504 0.80108 0.73097 0.89270 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.47 13.05 21.66 0.28 -49.19 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 42.98 29.55 68.60 2.03 45.00 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.57 -29.45 5.29 -306.98 -1.62 -31.08 16 10 C 0.44 20.78 7.82 87.66 0.69 21.47 16 11 O -0.62 -34.88 15.78 -3.08 -0.05 -34.93 16 12 C 0.06 2.17 6.17 85.56 0.53 2.70 16 13 N -0.69 -20.86 6.13 -517.90 -3.17 -24.04 16 14 C 0.07 1.41 5.02 86.31 0.43 1.85 16 15 C -0.08 -1.50 3.09 -9.72 -0.03 -1.53 16 16 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 17 C -0.12 -2.26 5.69 31.88 0.18 -2.08 16 18 C -0.13 -2.36 6.54 31.67 0.21 -2.15 16 19 C 0.14 2.35 3.25 45.72 0.15 2.50 16 20 H 0.08 1.61 7.56 -2.39 -0.02 1.60 16 21 N -0.70 -11.38 5.03 -443.07 -2.23 -13.60 16 22 C 0.60 12.78 7.78 86.44 0.67 13.45 16 23 O -0.56 -15.73 16.52 -4.31 -0.07 -15.80 16 24 C -0.11 -2.02 7.13 24.07 0.17 -1.84 16 25 C -0.13 -2.06 10.62 22.39 0.24 -1.82 16 26 C -0.24 -2.32 10.87 22.07 0.24 -2.08 16 27 C 0.01 0.08 12.08 67.10 0.81 0.89 16 28 O -0.17 -2.38 10.40 -5.03 -0.05 -2.43 16 29 C -0.11 -1.51 6.14 31.32 0.19 -1.32 16 30 H 0.28 13.92 8.31 -92.71 -0.77 13.14 16 31 H 0.40 19.23 7.90 -92.70 -0.73 18.50 16 32 H 0.07 1.91 8.14 -2.38 -0.02 1.90 16 33 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.34 11.14 7.72 -89.70 -0.69 10.45 16 35 H 0.04 0.76 8.02 -2.38 -0.02 0.74 16 36 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.34 8.05 -2.38 -0.02 1.32 16 38 H 0.07 1.24 7.97 -2.39 -0.02 1.22 16 39 H 0.06 1.19 8.04 -2.39 -0.02 1.17 16 40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.41 5.11 8.08 -92.71 -0.75 4.36 16 42 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 44 H 0.25 -0.45 8.06 -2.91 -0.02 -0.48 16 45 H 0.09 0.96 7.31 -2.39 -0.02 0.94 16 46 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -75.01 389.57 -0.27 -75.28 By element: Atomic # 1 Polarization: 40.39 SS G_CDS: -1.14 Total: 39.25 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 5.76 Total: 11.54 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -6.74 Total: -117.91 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.17 Total: -53.16 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -75.01 -0.27 -75.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734466860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.300 kcal (2) G-P(sol) polarization free energy of solvation -75.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds