Wall clock time and date at job start Tue Mar 31 2020 18:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86801 * 120.00096 * 2 1 4 4 H 1.48503 * 109.46736 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47306 * 300.00356 * 3 2 1 6 6 H 1.48500 * 109.47060 * 60.00317 * 3 2 1 7 7 C 1.38943 * 119.99468 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00047 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00678 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00250 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00077 * 0.02562 * 10 9 7 12 12 C 1.50696 * 119.99725 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47186 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00148 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46736 * 179.97438 * 14 13 12 16 16 H 1.08996 * 110.43897 * 52.46588 * 15 14 13 17 17 C 1.54887 * 110.48817 * 289.77434 * 15 14 13 18 18 C 1.54889 * 102.74865 * 203.38244 * 17 15 14 19 19 C 1.54272 * 104.19819 * 37.94293 * 18 17 15 20 20 H 1.09000 * 110.06989 * 95.69220 * 19 18 17 21 21 N 1.46499 * 110.03485 * 217.10629 * 19 18 17 22 22 C 1.34777 * 119.99665 * 272.44411 * 21 19 18 23 23 O 1.21693 * 120.00200 * 359.72115 * 22 21 19 24 24 C 1.46658 * 119.99639 * 179.72443 * 22 21 19 25 25 C 1.36545 * 125.98797 * 179.97438 * 24 22 21 26 26 C 1.40362 * 106.71195 * 179.97438 * 25 24 22 27 27 C 1.35135 * 107.10939 * 0.02562 * 26 25 24 28 28 O 1.33922 * 108.77042 * 359.75289 * 27 26 25 29 29 C 1.53878 * 106.59664 * 336.39023 * 19 18 17 30 30 H 0.97007 * 119.99502 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99608 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.47404 * 59.99944 * 12 10 9 33 33 H 1.09005 * 109.47395 * 300.00059 * 12 10 9 34 34 H 1.00903 * 110.99828 * 303.95724 * 13 12 10 35 35 H 1.08994 * 109.46835 * 60.00288 * 14 13 12 36 36 H 1.08999 * 109.47181 * 299.99904 * 14 13 12 37 37 H 1.09000 * 110.75794 * 321.69305 * 17 15 14 38 38 H 1.09001 * 110.75757 * 84.88727 * 17 15 14 39 39 H 1.09006 * 110.48893 * 279.26541 * 18 17 15 40 40 H 1.09003 * 110.48546 * 156.62145 * 18 17 15 41 41 H 0.97001 * 119.99790 * 92.16124 * 21 19 18 42 42 H 1.08007 * 126.64433 * 0.02562 * 25 24 22 43 43 H 1.07993 * 126.44548 * 180.02562 * 26 25 24 44 44 H 1.08005 * 125.61421 * 180.02562 * 27 26 25 45 45 H 1.09003 * 110.03007 * 119.27710 * 29 19 18 46 46 H 1.08995 * 110.03181 * 240.71219 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5579 -0.0021 12 6 1.2436 -4.8629 -0.0022 13 7 2.1981 -5.9795 -0.0027 14 6 1.4977 -7.2708 -0.0026 15 6 2.5227 -8.4068 -0.0038 16 1 3.2402 -8.2729 0.8056 17 6 3.2493 -8.4800 -1.3697 18 6 3.7391 -9.9486 -1.4180 19 6 2.5889 -10.7524 -0.7770 20 1 1.9313 -11.1469 -1.5516 21 7 3.1312 -11.8501 0.0274 22 6 3.3956 -13.0401 -0.5475 23 8 3.1790 -13.2043 -1.7337 24 6 3.9441 -14.1371 0.2565 25 6 4.2554 -15.3868 -0.1973 26 6 4.7469 -16.1053 0.9038 27 6 4.7139 -15.2734 1.9682 28 8 4.2344 -14.0870 1.5731 29 6 1.8155 -9.7721 0.1222 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 -0.0005 32 1 0.6166 -4.9200 -0.8919 33 1 0.6172 -4.9212 0.8880 34 1 2.8330 -5.9121 -0.7840 35 1 0.8726 -7.3451 -0.8924 36 1 0.8732 -7.3454 0.8875 37 1 2.5572 -8.2766 -2.1868 38 1 4.0910 -7.7880 -1.3971 39 1 4.6549 -10.0646 -0.8383 40 1 3.8968 -10.2644 -2.4493 41 1 3.3039 -11.7192 0.9729 42 1 4.1457 -15.7514 -1.2080 43 1 5.0873 -17.1301 0.9009 44 1 5.0271 -15.5227 2.9713 45 1 0.7827 -9.6902 -0.2166 46 1 1.8436 -10.1131 1.1570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734466862.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:07 Heat of formation + Delta-G solvation = -66.399486 kcal Electronic energy + Delta-G solvation = -27220.447918 eV Core-core repulsion = 23111.114886 eV Total energy + Delta-G solvation = -4109.333032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.13014 -40.21012 -38.61117 -38.03211 -35.50907 -34.07359 -33.68499 -33.34627 -31.22342 -30.62693 -29.71413 -28.43386 -26.45777 -24.49072 -23.66331 -22.88840 -22.23528 -20.86971 -20.66899 -20.12695 -19.18525 -18.91685 -17.86844 -16.94489 -16.78260 -16.59769 -16.25728 -15.55032 -15.33491 -14.81264 -14.69854 -14.46219 -14.41227 -13.99299 -13.72304 -13.58485 -13.47401 -13.37822 -13.18182 -13.01850 -12.83722 -12.25468 -12.06949 -11.73140 -11.52646 -11.48137 -11.16808 -11.05346 -10.96707 -10.72601 -10.65365 -10.57830 -10.54348 -10.33628 -10.21391 -9.53232 -9.51073 -9.12361 -8.44453 -8.03258 -7.94503 -6.40933 -3.81651 0.61163 1.88767 2.21794 2.77989 2.82047 3.17019 3.27497 3.34900 3.92362 4.07475 4.17049 4.25679 4.33256 4.42625 4.50504 4.57026 4.70666 5.07134 5.12953 5.17194 5.21121 5.23009 5.26292 5.29511 5.34677 5.41541 5.42918 5.47310 5.51196 5.67887 5.80524 5.81216 5.83441 5.89888 5.94759 6.00918 6.09141 6.16428 6.25859 6.32733 6.36430 7.06230 7.25538 7.56286 7.68701 7.70231 8.07784 8.62468 9.19039 9.55632 10.07138 10.76926 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.038092 B = 0.001480 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.879320 B =18916.167374 C =19042.568116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.669 5.669 14 C 0.066 3.934 15 C -0.088 4.088 16 H 0.088 0.912 17 C -0.123 4.123 18 C -0.133 4.133 19 C 0.140 3.860 20 H 0.095 0.905 21 N -0.712 5.712 22 C 0.603 3.397 23 O -0.520 6.520 24 C -0.080 4.080 25 C -0.120 4.120 26 C -0.226 4.226 27 C -0.006 4.006 28 O -0.164 6.164 29 C -0.125 4.125 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.349 0.651 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.405 0.595 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.078 0.922 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.634 -30.808 2.560 31.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.083 4.083 13 N -0.302 5.302 14 C -0.064 4.064 15 C -0.107 4.107 16 H 0.107 0.893 17 C -0.161 4.161 18 C -0.171 4.171 19 C 0.036 3.964 20 H 0.113 0.887 21 N -0.363 5.363 22 C 0.389 3.611 23 O -0.398 6.398 24 C -0.133 4.133 25 C -0.141 4.141 26 C -0.245 4.245 27 C -0.076 4.076 28 O -0.060 6.060 29 C -0.163 4.163 30 H 0.080 0.920 31 H 0.225 0.775 32 H 0.061 0.939 33 H 0.103 0.897 34 H 0.169 0.831 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.241 0.759 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.228 0.772 45 H 0.097 0.903 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.180 -30.442 2.554 30.834 hybrid contribution -0.451 0.590 -0.388 0.838 sum 3.729 -29.852 2.166 30.162 Atomic orbital electron populations 1.69627 1.05939 1.28016 1.50773 1.25259 0.95632 0.99711 0.97364 0.85801 0.79720 0.81142 0.77685 1.19216 1.20782 1.20758 1.19762 0.93412 0.82252 1.47417 0.87869 1.41875 1.09200 1.04621 1.64438 1.19831 0.88394 0.84751 0.84377 1.90518 1.13781 1.87087 1.55349 1.21671 0.94403 0.91041 1.01141 1.60071 1.18851 0.99921 1.51330 1.22008 0.95157 0.88891 1.00316 1.21997 0.97484 0.92690 0.98542 0.89347 1.22586 1.00600 0.95842 0.97027 1.22771 0.97959 0.95076 1.01324 1.21783 0.95319 0.85790 0.93518 0.88736 1.46152 1.64997 1.11558 1.13553 1.16572 0.77723 0.80879 0.85967 1.90893 1.53050 1.81911 1.13923 1.22140 1.11047 0.97919 0.82144 1.22013 0.99058 0.92008 1.01029 1.21895 1.07880 1.02189 0.92534 1.24456 0.99921 0.82483 1.00698 1.84065 1.63099 1.34733 1.24056 1.22466 0.99787 0.94365 0.99730 0.91952 0.77470 0.93950 0.89666 0.83149 0.95411 0.91131 0.91284 0.90476 0.91040 0.91018 0.75900 0.82200 0.82518 0.77237 0.90311 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.39 9.68 -14.94 -0.14 -8.53 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 9 N -0.56 -14.40 5.29 -10.97 -0.06 -14.46 16 10 C 0.44 10.48 7.82 -10.99 -0.09 10.39 16 11 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 12 C 0.05 0.89 6.17 -4.98 -0.03 0.85 16 13 N -0.67 -10.64 6.13 -115.06 -0.70 -11.34 16 14 C 0.07 0.77 5.02 -3.82 -0.02 0.75 16 15 C -0.09 -0.86 3.09 -88.96 -0.27 -1.13 16 16 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 17 C -0.12 -1.19 5.69 -24.74 -0.14 -1.33 16 18 C -0.13 -1.23 6.53 -25.07 -0.16 -1.39 16 19 C 0.14 1.21 3.24 -66.81 -0.22 0.99 16 20 H 0.09 0.92 7.57 -51.93 -0.39 0.53 16 21 N -0.71 -5.93 5.03 -54.03 -0.27 -6.21 16 22 C 0.60 6.27 7.78 -12.86 -0.10 6.17 16 23 O -0.52 -7.00 16.52 5.20 0.09 -6.91 16 24 C -0.08 -0.73 7.13 -36.80 -0.26 -0.99 16 25 C -0.12 -0.97 10.62 -39.39 -0.42 -1.39 16 26 C -0.23 -1.29 10.88 -39.89 -0.43 -1.72 16 27 C -0.01 -0.03 12.08 29.63 0.36 0.33 16 28 O -0.16 -1.23 10.40 5.02 0.05 -1.18 16 29 C -0.12 -0.97 6.14 -25.61 -0.16 -1.13 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.35 5.75 7.72 -39.29 -0.30 5.45 16 35 H 0.03 0.31 8.02 -51.93 -0.42 -0.11 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.67 7.96 -51.93 -0.41 0.25 16 38 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 39 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.41 2.65 8.08 -40.82 -0.33 2.33 16 42 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 43 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.21 0.19 8.06 -52.48 -0.42 -0.23 16 45 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 46 H 0.07 0.50 7.62 -51.93 -0.40 0.10 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -33.94 389.57 -8.13 -42.07 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -6.71 Total: 13.45 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.19 Total: 2.36 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.31 Total: -55.90 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: 0.23 Total: -23.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.94 -8.13 -42.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734466862.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.327 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds