Wall clock time and date at job start Tue Mar 31 2020 18:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48494 * 109.46991 * 274.45431 * 3 2 1 5 5 H 1.48504 * 109.47105 * 34.45494 * 3 2 1 6 6 H 1.48501 * 109.47331 * 154.45187 * 3 2 1 7 7 C 1.38813 * 120.00170 * 180.27347 * 2 1 3 8 8 H 1.07999 * 119.99932 * 353.93346 * 7 2 1 9 9 N 1.36937 * 120.00015 * 173.93702 * 7 2 1 10 10 C 1.46498 * 119.99816 * 184.81232 * 9 7 2 11 11 C 1.52998 * 109.47062 * 174.88023 * 10 9 7 12 12 N 1.46506 * 110.01806 * 53.31871 * 11 10 9 13 13 C 1.34778 * 119.99617 * 62.41610 * 12 11 10 14 14 O 1.21491 * 120.00479 * 5.02785 * 13 12 11 15 15 C 1.48335 * 119.99425 * 185.02983 * 13 12 11 16 16 N 1.31598 * 127.15820 * 4.83024 * 15 13 12 17 17 O 1.21563 * 111.54691 * 179.84129 * 16 15 13 18 18 C 1.32817 * 111.51589 * 0.40678 * 17 16 15 19 19 C 1.35704 * 106.70411 * 359.80009 * 18 17 16 20 20 C 1.50030 * 123.86451 * 179.82950 * 19 18 17 21 21 O 1.43614 * 107.82771 * 345.26844 * 20 19 18 22 22 C 1.42997 * 114.38394 * 50.02143 * 21 20 19 23 23 C 1.50667 * 130.82872 * 179.83543 * 18 17 16 24 24 C 1.54267 * 110.03430 * 291.92569 * 11 10 9 25 25 C 1.54961 * 104.16173 * 217.13515 * 24 11 10 26 26 C 1.54893 * 102.77651 * 37.88939 * 25 24 11 27 27 C 1.53872 * 110.03425 * 174.70640 * 11 10 9 28 28 H 0.97002 * 120.00638 * 359.72828 * 1 2 3 29 29 H 0.96994 * 119.99971 * 4.81197 * 9 7 2 30 30 H 1.09001 * 109.47034 * 294.88024 * 10 9 7 31 31 H 1.08995 * 109.47581 * 54.87821 * 10 9 7 32 32 H 0.96997 * 119.99615 * 242.42058 * 12 11 10 33 33 H 1.09001 * 109.79469 * 104.85318 * 20 19 18 34 34 H 1.09010 * 109.78977 * 225.68646 * 20 19 18 35 35 H 1.08999 * 109.40120 * 49.72543 * 22 21 20 36 36 H 1.08998 * 109.39554 * 169.54939 * 22 21 20 37 37 H 1.09005 * 109.82137 * 44.52777 * 23 18 17 38 38 H 1.09005 * 109.82329 * 283.60419 * 23 18 17 39 39 H 1.08995 * 110.48269 * 335.78519 * 24 11 10 40 40 H 1.09002 * 110.48535 * 98.42305 * 24 11 10 41 41 H 1.08999 * 110.72306 * 279.57366 * 25 24 11 42 42 H 1.09004 * 110.76335 * 156.22305 * 25 24 11 43 43 H 1.08998 * 110.48589 * 203.40590 * 26 25 24 44 44 H 1.08993 * 110.48682 * 80.75769 * 26 25 24 45 45 H 1.08996 * 110.03783 * 238.57223 * 27 11 10 46 46 H 1.09008 * 110.03246 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4034 2.1008 -1.3958 5 1 1.4978 2.6237 0.7921 6 1 3.5916 1.4149 0.6038 7 6 2.0103 -1.2021 -0.0057 8 1 1.4748 -2.1353 0.0887 9 7 3.3739 -1.2048 -0.1310 10 6 4.0966 -2.4741 -0.2431 11 6 5.5793 -2.1960 -0.4986 12 7 6.1024 -1.2866 0.5241 13 6 6.1096 -1.6613 1.8188 14 8 5.7682 -2.7855 2.1279 15 6 6.5345 -0.7008 2.8663 16 7 6.8450 0.5676 2.7030 17 8 7.1515 1.0914 3.7563 18 6 7.0923 0.2289 4.7646 19 6 6.6954 -0.9580 4.2399 20 6 6.5059 -2.2077 5.0480 21 8 7.1359 -2.0068 6.3229 22 6 6.7699 -0.7889 6.9769 23 6 7.3805 0.4084 6.2325 24 6 5.7675 -1.5794 -1.9001 25 6 7.0911 -2.2010 -2.4131 26 6 7.0153 -3.6542 -1.8825 27 6 6.3726 -3.5144 -0.4870 28 1 -0.4851 0.8400 0.0040 29 1 3.8612 -0.3663 -0.1455 30 1 3.9870 -3.0377 0.6834 31 1 3.6877 -3.0532 -1.0711 32 1 6.4433 -0.4150 0.2694 33 1 5.4419 -2.3988 5.1883 34 1 6.9688 -3.0518 4.5366 35 1 5.6840 -0.6946 6.9852 36 1 7.1399 -0.8033 8.0020 37 1 6.9279 1.3343 6.5876 38 1 8.4577 0.4357 6.3971 39 1 4.9389 -1.8549 -2.5524 40 1 5.8558 -0.4952 -1.8311 41 1 7.9507 -1.6801 -1.9914 42 1 7.1270 -2.1889 -3.5024 43 1 8.0140 -4.0832 -1.8012 44 1 6.3883 -4.2652 -2.5317 45 1 7.1472 -3.4774 0.2789 46 1 5.7012 -4.3525 -0.2999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753512036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:36 Heat of formation + Delta-G solvation = -0.843172 kcal Electronic energy + Delta-G solvation = -30405.720581 eV Core-core repulsion = 26299.230284 eV Total energy + Delta-G solvation = -4106.490297 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.25450 -40.26874 -39.12514 -37.73901 -34.51322 -34.21638 -33.56482 -33.17487 -31.31602 -30.76583 -28.81346 -28.48569 -26.73070 -24.95399 -24.40192 -24.05359 -21.91610 -21.31824 -20.74797 -20.28156 -19.11310 -18.08892 -17.99203 -17.59941 -16.98226 -16.26513 -16.08823 -15.73493 -15.13120 -15.11654 -14.68808 -14.45941 -14.38515 -14.13709 -13.92578 -13.63890 -13.31332 -13.08528 -13.03457 -12.70666 -12.16735 -12.05483 -11.91341 -11.70480 -11.45470 -11.40006 -11.08055 -11.04193 -10.93539 -10.80565 -10.62887 -10.49886 -10.46055 -10.16676 -10.11910 -9.93235 -9.61740 -9.34946 -8.86567 -8.81091 -7.18377 -5.75846 -3.09484 1.00846 1.46784 2.60042 2.99898 3.26999 3.35179 3.39224 3.41659 3.43395 3.92341 4.19829 4.42381 4.52832 4.58388 4.59513 4.70193 4.73403 4.82779 4.94655 5.07203 5.17051 5.27072 5.29931 5.35035 5.44921 5.45903 5.53818 5.55986 5.56837 5.68212 5.71157 5.77971 5.83883 5.87596 5.96949 6.11922 6.23169 6.35478 6.39952 6.44042 6.71446 6.73824 6.89020 7.51738 7.86354 8.02624 8.23586 8.43419 9.23214 9.95742 10.16642 11.42740 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.004799 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.305942 B = 5833.337641 C = 7510.561186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.878 3.122 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.238 4.238 8 H 0.090 0.910 9 N -0.751 5.751 10 C 0.151 3.849 11 C 0.164 3.836 12 N -0.698 5.698 13 C 0.606 3.394 14 O -0.510 6.510 15 C 0.003 3.997 16 N -0.335 5.335 17 O 0.131 5.869 18 C -0.034 4.034 19 C -0.199 4.199 20 C 0.141 3.859 21 O -0.376 6.376 22 C 0.060 3.940 23 C -0.067 4.067 24 C -0.121 4.121 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.116 4.116 28 H 0.258 0.742 29 H 0.358 0.642 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.401 0.599 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.375 -1.742 8.373 22.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.190 4.190 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.368 4.368 8 H 0.108 0.892 9 N -0.397 5.397 10 C 0.023 3.977 11 C 0.079 3.921 12 N -0.349 5.349 13 C 0.389 3.611 14 O -0.384 6.384 15 C -0.155 4.155 16 N -0.038 5.038 17 O 0.060 5.940 18 C -0.099 4.099 19 C -0.204 4.204 20 C 0.065 3.935 21 O -0.294 6.294 22 C -0.018 4.018 23 C -0.106 4.106 24 C -0.159 4.159 25 C -0.163 4.163 26 C -0.162 4.162 27 C -0.155 4.155 28 H 0.068 0.932 29 H 0.191 0.809 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.236 0.764 33 H 0.100 0.900 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 20.004 -2.030 7.548 21.477 hybrid contribution 0.296 1.635 0.204 1.674 sum 20.301 -0.394 7.753 21.734 Atomic orbital electron populations 1.69710 1.05012 1.25636 1.57791 1.24621 0.95145 0.96960 1.02305 0.86604 0.79341 0.85452 0.77729 1.21063 1.21755 1.20534 1.19056 0.81036 0.94811 1.41867 0.89239 1.42613 1.04675 1.02130 1.90291 1.21128 0.87075 0.89754 0.99774 1.21464 0.94823 0.89276 0.86571 1.45965 1.62919 1.20282 1.05770 1.16658 0.77731 0.85449 0.81303 1.90767 1.47075 1.19032 1.81499 1.22999 1.05191 0.92280 0.95075 1.74676 1.15268 1.09428 1.04432 1.84639 1.62283 1.35832 1.11270 1.23986 1.03366 0.88582 0.93980 1.21345 1.07010 0.99020 0.93021 1.20987 0.99100 0.92584 0.80861 1.88110 1.69544 1.39237 1.32513 1.22744 0.99791 0.82846 0.96383 1.21043 1.03951 1.01689 0.83886 1.22660 0.98494 1.00088 0.94675 1.22546 0.97363 0.96014 1.00331 1.22393 1.00425 0.96794 0.96581 1.22419 0.99406 0.96746 0.96937 0.93160 0.80907 0.94073 0.94080 0.76448 0.90015 0.86207 0.91855 0.86921 0.87685 0.87797 0.89007 0.91272 0.91836 0.91370 0.91877 0.91303 0.91229 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.97 13.97 55.49 0.78 -29.20 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.91 27.77 -169.99 -4.72 18.19 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.28 -7.02 6.49 56.52 0.37 -6.65 16 7 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 N -0.75 -18.46 5.10 -59.91 -0.31 -18.76 16 10 C 0.15 3.10 4.59 -4.04 -0.02 3.08 16 11 C 0.16 2.64 0.58 -130.70 -0.08 2.56 16 12 N -0.70 -11.47 4.40 -47.35 -0.21 -11.68 16 13 C 0.61 10.70 7.00 -12.10 -0.08 10.62 16 14 O -0.51 -9.73 13.60 5.37 0.07 -9.66 16 15 C 0.00 0.05 7.17 -82.89 -0.59 -0.54 16 16 N -0.33 -5.37 11.92 33.26 0.40 -4.98 16 17 O 0.13 1.81 11.17 20.04 0.22 2.04 16 18 C -0.03 -0.41 7.50 -35.23 -0.26 -0.67 16 19 C -0.20 -2.81 6.15 -104.94 -0.65 -3.46 16 20 C 0.14 1.77 6.67 35.68 0.24 2.01 16 21 O -0.38 -4.11 10.76 -35.23 -0.38 -4.49 16 22 C 0.06 0.45 6.77 37.49 0.25 0.70 16 23 C -0.07 -0.49 6.56 -27.57 -0.18 -0.67 16 24 C -0.12 -1.71 5.82 -25.03 -0.15 -1.85 16 25 C -0.12 -1.39 6.91 -24.70 -0.17 -1.57 16 26 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 27 C -0.12 -1.63 5.17 -25.61 -0.13 -1.76 16 28 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 29 H 0.36 8.64 5.04 -40.82 -0.21 8.44 16 30 H 0.04 0.94 6.75 -51.93 -0.35 0.59 16 31 H 0.04 0.84 8.00 -51.93 -0.42 0.42 16 32 H 0.40 6.12 8.03 -40.82 -0.33 5.80 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.12 1.50 8.09 -51.92 -0.42 1.08 16 35 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 36 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.37 7.76 -51.93 -0.40 0.97 16 40 H 0.07 0.97 7.71 -51.93 -0.40 0.57 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.07 1.01 6.96 -51.93 -0.36 0.65 16 46 H 0.08 1.13 7.67 -51.92 -0.40 0.73 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -35.18 368.68 -7.51 -42.70 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.68 Total: 10.45 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.25 Total: -0.17 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: 0.66 Total: -64.61 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.08 Total: -12.11 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.72 Total: 18.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.18 -7.51 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753512036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.853 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds