Wall clock time and date at job start Tue Mar 31 2020 18:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48494 * 109.46991 * 274.45431 * 3 2 1 5 5 H 1.48504 * 109.47105 * 34.45494 * 3 2 1 6 6 H 1.48501 * 109.47331 * 154.45187 * 3 2 1 7 7 C 1.38813 * 120.00170 * 180.27347 * 2 1 3 8 8 H 1.07999 * 119.99932 * 353.93346 * 7 2 1 9 9 N 1.36937 * 120.00015 * 173.93702 * 7 2 1 10 10 C 1.46498 * 119.99816 * 184.81232 * 9 7 2 11 11 C 1.52998 * 109.47062 * 174.88023 * 10 9 7 12 12 N 1.46506 * 110.01806 * 53.31871 * 11 10 9 13 13 C 1.34778 * 119.99617 * 62.41610 * 12 11 10 14 14 O 1.21491 * 120.00479 * 5.02785 * 13 12 11 15 15 C 1.48335 * 119.99425 * 185.02983 * 13 12 11 16 16 N 1.31598 * 127.15820 * 4.83024 * 15 13 12 17 17 O 1.21563 * 111.54691 * 179.84129 * 16 15 13 18 18 C 1.32817 * 111.51589 * 0.40678 * 17 16 15 19 19 C 1.35704 * 106.70411 * 359.80009 * 18 17 16 20 20 C 1.50030 * 123.86451 * 179.82950 * 19 18 17 21 21 O 1.43614 * 107.82771 * 345.26844 * 20 19 18 22 22 C 1.42997 * 114.38394 * 50.02143 * 21 20 19 23 23 C 1.50667 * 130.82872 * 179.83543 * 18 17 16 24 24 C 1.54267 * 110.03430 * 291.92569 * 11 10 9 25 25 C 1.54961 * 104.16173 * 217.13515 * 24 11 10 26 26 C 1.54893 * 102.77651 * 37.88939 * 25 24 11 27 27 C 1.53872 * 110.03425 * 174.70640 * 11 10 9 28 28 H 0.97002 * 120.00638 * 359.72828 * 1 2 3 29 29 H 0.96994 * 119.99971 * 4.81197 * 9 7 2 30 30 H 1.09001 * 109.47034 * 294.88024 * 10 9 7 31 31 H 1.08995 * 109.47581 * 54.87821 * 10 9 7 32 32 H 0.96997 * 119.99615 * 242.42058 * 12 11 10 33 33 H 1.09001 * 109.79469 * 104.85318 * 20 19 18 34 34 H 1.09010 * 109.78977 * 225.68646 * 20 19 18 35 35 H 1.08999 * 109.40120 * 49.72543 * 22 21 20 36 36 H 1.08998 * 109.39554 * 169.54939 * 22 21 20 37 37 H 1.09005 * 109.82137 * 44.52777 * 23 18 17 38 38 H 1.09005 * 109.82329 * 283.60419 * 23 18 17 39 39 H 1.08995 * 110.48269 * 335.78519 * 24 11 10 40 40 H 1.09002 * 110.48535 * 98.42305 * 24 11 10 41 41 H 1.08999 * 110.72306 * 279.57366 * 25 24 11 42 42 H 1.09004 * 110.76335 * 156.22305 * 25 24 11 43 43 H 1.08998 * 110.48589 * 203.40590 * 26 25 24 44 44 H 1.08993 * 110.48682 * 80.75769 * 26 25 24 45 45 H 1.08996 * 110.03783 * 238.57223 * 27 11 10 46 46 H 1.09008 * 110.03246 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4034 2.1008 -1.3958 5 1 1.4978 2.6237 0.7921 6 1 3.5916 1.4149 0.6038 7 6 2.0103 -1.2021 -0.0057 8 1 1.4748 -2.1353 0.0887 9 7 3.3739 -1.2048 -0.1310 10 6 4.0966 -2.4741 -0.2431 11 6 5.5793 -2.1960 -0.4986 12 7 6.1024 -1.2866 0.5241 13 6 6.1096 -1.6613 1.8188 14 8 5.7682 -2.7855 2.1279 15 6 6.5345 -0.7008 2.8663 16 7 6.8450 0.5676 2.7030 17 8 7.1515 1.0914 3.7563 18 6 7.0923 0.2289 4.7646 19 6 6.6954 -0.9580 4.2399 20 6 6.5059 -2.2077 5.0480 21 8 7.1359 -2.0068 6.3229 22 6 6.7699 -0.7889 6.9769 23 6 7.3805 0.4084 6.2325 24 6 5.7675 -1.5794 -1.9001 25 6 7.0911 -2.2010 -2.4131 26 6 7.0153 -3.6542 -1.8825 27 6 6.3726 -3.5144 -0.4870 28 1 -0.4851 0.8400 0.0040 29 1 3.8612 -0.3663 -0.1455 30 1 3.9870 -3.0377 0.6834 31 1 3.6877 -3.0532 -1.0711 32 1 6.4433 -0.4150 0.2694 33 1 5.4419 -2.3988 5.1883 34 1 6.9688 -3.0518 4.5366 35 1 5.6840 -0.6946 6.9852 36 1 7.1399 -0.8033 8.0020 37 1 6.9279 1.3343 6.5876 38 1 8.4577 0.4357 6.3971 39 1 4.9389 -1.8549 -2.5524 40 1 5.8558 -0.4952 -1.8311 41 1 7.9507 -1.6801 -1.9914 42 1 7.1270 -2.1889 -3.5024 43 1 8.0140 -4.0832 -1.8012 44 1 6.3883 -4.2652 -2.5317 45 1 7.1472 -3.4774 0.2789 46 1 5.7012 -4.3525 -0.2999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753512036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:35 Heat of formation + Delta-G solvation = -26.433879 kcal Electronic energy + Delta-G solvation = -30406.830277 eV Core-core repulsion = 26299.230284 eV Total energy + Delta-G solvation = -4107.599993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.36595 -41.59862 -39.95244 -39.01090 -36.39515 -35.38519 -34.73109 -34.20850 -33.40294 -31.69891 -30.16520 -29.75376 -27.76701 -26.57189 -25.54750 -24.95264 -23.81705 -22.44135 -21.80086 -21.36984 -20.58107 -19.66648 -19.16382 -19.00421 -18.05319 -17.44122 -17.15513 -16.67717 -16.57774 -16.46764 -15.95898 -15.83636 -15.69909 -15.49581 -15.08609 -14.73982 -14.66223 -14.56304 -14.18557 -13.84798 -13.82842 -13.73898 -12.97445 -12.89718 -12.83078 -12.71435 -12.39243 -12.26069 -12.08705 -12.02886 -12.00906 -11.92588 -11.84470 -11.58516 -11.45994 -11.32488 -11.00274 -10.96674 -10.33284 -10.21856 -9.35826 -8.10990 -5.43251 -0.12278 0.39601 1.25420 1.28995 1.35589 1.61212 1.78828 1.98225 2.37763 2.56904 2.79196 3.17950 3.32345 3.38048 3.49583 3.57780 3.66339 3.74169 3.88602 3.95232 4.12206 4.19190 4.29494 4.31171 4.39847 4.41067 4.48558 4.58967 4.62418 4.69913 4.76340 4.76953 4.82864 4.85894 4.95062 4.97649 5.05719 5.09400 5.19917 5.26198 5.43547 5.49076 5.67721 5.95082 6.12431 6.22199 6.75677 6.92523 6.98893 7.74123 7.95771 9.10803 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.004799 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.305942 B = 5833.337641 C = 7510.561186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.056 4.056 3 Si 0.949 3.051 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.234 4.234 8 H 0.053 0.947 9 N -0.748 5.748 10 C 0.151 3.849 11 C 0.167 3.833 12 N -0.694 5.694 13 C 0.599 3.401 14 O -0.534 6.534 15 C -0.023 4.023 16 N -0.353 5.353 17 O 0.139 5.861 18 C -0.016 4.016 19 C -0.224 4.224 20 C 0.148 3.852 21 O -0.384 6.384 22 C 0.050 3.950 23 C -0.064 4.064 24 C -0.122 4.122 25 C -0.113 4.113 26 C -0.117 4.117 27 C -0.111 4.111 28 H 0.259 0.741 29 H 0.363 0.637 30 H 0.015 0.985 31 H 0.041 0.959 32 H 0.407 0.593 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.150 0.850 37 H 0.136 0.864 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.405 -0.038 8.902 25.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.248 4.248 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.365 4.365 8 H 0.071 0.929 9 N -0.394 5.394 10 C 0.023 3.977 11 C 0.082 3.918 12 N -0.346 5.346 13 C 0.383 3.617 14 O -0.410 6.410 15 C -0.180 4.180 16 N -0.056 5.056 17 O 0.066 5.934 18 C -0.081 4.081 19 C -0.229 4.229 20 C 0.071 3.929 21 O -0.302 6.302 22 C -0.027 4.027 23 C -0.101 4.101 24 C -0.160 4.160 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.150 4.150 28 H 0.068 0.932 29 H 0.196 0.804 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.243 0.757 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.079 0.921 36 H 0.168 0.832 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 23.077 -0.337 8.053 24.444 hybrid contribution -0.692 1.037 0.176 1.259 sum 22.385 0.700 8.229 23.859 Atomic orbital electron populations 1.69882 1.06923 1.26665 1.59448 1.25401 0.96023 1.00804 1.02591 0.85477 0.78230 0.80233 0.78404 1.19418 1.21966 1.19146 1.19005 0.83034 0.93560 1.40905 0.92900 1.42526 1.03110 1.03760 1.89974 1.21204 0.90212 0.87858 0.98378 1.21444 0.91752 0.90844 0.87802 1.45972 1.62487 1.20573 1.05544 1.16955 0.77361 0.85505 0.81910 1.90744 1.48169 1.20106 1.81969 1.22996 1.06664 0.92572 0.95817 1.74637 1.16114 1.09206 1.05612 1.84601 1.61585 1.35860 1.11323 1.24844 1.00677 0.87221 0.95367 1.21601 1.08316 1.00563 0.92453 1.20781 0.98455 0.91947 0.81672 1.88100 1.69436 1.41173 1.31533 1.23128 1.00089 0.81632 0.97813 1.21397 1.05795 1.02791 0.80133 1.22673 1.00105 1.00342 0.92880 1.22513 0.95669 0.95286 1.01586 1.22386 1.01320 0.97363 0.94394 1.22354 0.98761 0.94964 0.98957 0.93202 0.80359 0.96667 0.94065 0.75693 0.91109 0.87107 0.92147 0.83221 0.84578 0.85205 0.89982 0.91000 0.90792 0.89246 0.89866 0.90580 0.91821 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.46 13.97 21.65 0.30 -64.16 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 3 Si 0.95 47.57 27.77 68.60 1.91 49.48 16 4 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 6 H -0.27 -12.61 6.49 99.48 0.65 -11.96 16 7 C -0.23 -14.13 10.47 84.03 0.88 -13.26 16 8 H 0.05 3.51 8.06 -2.91 -0.02 3.49 16 9 N -0.75 -37.37 5.10 -343.46 -1.75 -39.12 16 10 C 0.15 6.40 4.59 86.38 0.40 6.80 16 11 C 0.17 5.36 0.58 4.33 0.00 5.36 16 12 N -0.69 -22.76 4.40 -422.01 -1.86 -24.61 16 13 C 0.60 21.65 7.00 86.93 0.61 22.26 16 14 O -0.53 -21.34 13.60 -3.69 -0.05 -21.39 16 15 C -0.02 -0.78 7.17 42.46 0.30 -0.47 16 16 N -0.35 -11.05 11.92 -48.98 -0.58 -11.64 16 17 O 0.14 3.60 11.17 81.70 0.91 4.51 16 18 C -0.02 -0.35 7.50 25.09 0.19 -0.16 16 19 C -0.22 -6.26 6.15 -20.07 -0.12 -6.39 16 20 C 0.15 3.78 6.67 71.03 0.47 4.25 16 21 O -0.38 -7.87 10.76 -148.98 -1.60 -9.47 16 22 C 0.05 0.60 6.77 72.20 0.49 1.09 16 23 C -0.06 -0.68 6.56 30.05 0.20 -0.48 16 24 C -0.12 -3.25 5.82 31.69 0.18 -3.07 16 25 C -0.11 -2.19 6.91 31.91 0.22 -1.97 16 26 C -0.12 -2.36 6.83 31.67 0.22 -2.14 16 27 C -0.11 -3.09 5.17 31.32 0.16 -2.93 16 28 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 29 H 0.36 17.36 5.04 -92.71 -0.47 16.90 16 30 H 0.02 0.74 6.75 -2.39 -0.02 0.72 16 31 H 0.04 1.75 8.00 -2.39 -0.02 1.73 16 32 H 0.41 12.13 8.03 -92.71 -0.74 11.39 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.11 2.93 8.09 -2.38 -0.02 2.91 16 35 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 36 H 0.15 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.14 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.13 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.08 2.36 7.76 -2.39 -0.02 2.34 16 40 H 0.07 1.88 7.71 -2.39 -0.02 1.86 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 1.85 6.96 -2.39 -0.02 1.83 16 46 H 0.06 1.93 7.67 -2.38 -0.02 1.91 16 Total: -1.00 -79.41 368.68 1.69 -77.71 By element: Atomic # 1 Polarization: 33.02 SS G_CDS: -0.25 Total: 32.78 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 4.67 Total: 5.91 kcal Atomic # 7 Polarization: -135.64 SS G_CDS: -3.89 Total: -139.53 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.74 Total: -26.35 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.91 Total: 49.48 kcal Total: -79.41 1.69 -77.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753512036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.281 kcal (2) G-P(sol) polarization free energy of solvation -79.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds