Wall clock time and date at job start Tue Mar 31 2020 18:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47369 * 270.00189 * 3 2 1 5 5 H 1.48500 * 109.47149 * 30.00647 * 3 2 1 6 6 H 1.48503 * 109.46973 * 150.00052 * 3 2 1 7 7 C 1.38816 * 119.99452 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99273 * 196.90405 * 7 2 1 9 9 N 1.36932 * 120.00454 * 16.89622 * 7 2 1 10 10 C 1.47151 * 120.98361 * 206.22954 * 9 7 2 11 11 C 1.53291 * 108.38715 * 230.55868 * 10 9 7 12 12 O 1.42963 * 109.22588 * 307.70000 * 11 10 9 13 13 C 1.42960 * 114.16616 * 62.57642 * 12 11 10 14 14 H 1.09005 * 109.51427 * 57.39556 * 13 12 11 15 15 C 1.52995 * 109.51489 * 177.49980 * 13 12 11 16 16 N 1.46498 * 109.47258 * 300.00343 * 15 13 12 17 17 C 1.34774 * 120.00330 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99759 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99898 * 179.97438 * 17 16 15 20 20 O 1.42902 * 109.46673 * 179.97438 * 19 17 16 21 21 C 1.42903 * 113.99567 * 179.97438 * 20 19 17 22 22 C 1.50703 * 109.47056 * 179.97438 * 21 20 19 23 23 C 1.38673 * 120.41790 * 90.00148 * 22 21 20 24 24 C 1.38623 * 118.42051 * 180.02562 * 23 22 21 25 25 C 1.38228 * 119.16119 * 359.97438 * 24 23 22 26 26 N 1.31855 * 120.76613 * 0.02562 * 25 24 23 27 27 C 1.31886 * 121.72362 * 359.70130 * 26 25 24 28 28 C 1.47146 * 120.98144 * 26.25477 * 9 7 2 29 29 H 0.97005 * 120.00066 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.68327 * 110.83424 * 10 9 7 31 31 H 1.09004 * 109.71295 * 350.30361 * 10 9 7 32 32 H 1.08996 * 109.51471 * 187.76910 * 11 10 9 33 33 H 1.09007 * 109.51446 * 67.62137 * 11 10 9 34 34 H 1.09008 * 109.47143 * 59.99752 * 15 13 12 35 35 H 1.09004 * 109.47785 * 180.02562 * 15 13 12 36 36 H 0.97005 * 119.99765 * 359.97438 * 16 15 13 37 37 H 1.08996 * 109.46677 * 299.99188 * 19 17 16 38 38 H 1.09001 * 109.47309 * 59.99743 * 19 17 16 39 39 H 1.08995 * 109.47527 * 300.00086 * 21 20 19 40 40 H 1.09004 * 109.46970 * 60.00259 * 21 20 19 41 41 H 1.08000 * 120.78537 * 359.97438 * 23 22 21 42 42 H 1.07993 * 120.42074 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.62298 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.61982 * 180.31541 * 27 26 25 45 45 H 1.09001 * 109.68213 * 9.72198 * 28 9 7 46 46 H 1.09001 * 109.68442 * 249.16537 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0552 -1.2225 0.2714 9 7 1.3698 -2.3624 -0.3457 10 6 1.8341 -3.6635 0.1610 11 6 1.9819 -4.6204 -1.0274 12 8 0.7657 -4.6291 -1.7789 13 6 0.4249 -3.3660 -2.3553 14 1 1.2380 -3.0276 -2.9976 15 6 -0.8539 -3.5101 -3.1827 16 7 -0.6375 -4.4907 -4.2494 17 6 -1.6334 -4.7818 -5.1094 18 8 -2.7091 -4.2323 -4.9999 19 6 -1.4105 -5.7901 -6.2071 20 8 -2.6050 -5.9248 -6.9798 21 6 -2.5000 -6.8620 -8.0534 22 6 -3.8098 -6.9237 -8.7962 23 6 -4.0490 -6.0784 -9.8692 24 6 -5.2683 -6.1700 -10.5223 25 6 -6.1983 -7.0948 -10.0859 26 7 -5.9365 -7.8829 -9.0617 27 6 -4.7856 -7.8271 -8.4201 28 6 0.1974 -2.3448 -1.2347 29 1 -0.4850 0.8401 0.0004 30 1 1.1059 -4.0639 0.8664 31 1 2.7973 -3.5425 0.6569 32 1 2.1910 -5.6257 -0.6616 33 1 2.8010 -4.2863 -1.6643 34 1 -1.6669 -3.8468 -2.5393 35 1 -1.1129 -2.5469 -3.6222 36 1 0.2230 -4.9299 -4.3371 37 1 -0.5975 -5.4532 -6.8501 38 1 -1.1514 -6.7536 -5.7682 39 1 -1.7099 -6.5470 -8.7349 40 1 -2.2630 -7.8479 -7.6532 41 1 -3.3033 -5.3650 -10.1877 42 1 -5.4884 -5.5277 -11.3620 43 1 -7.1508 -7.1723 -10.5891 44 1 -4.6052 -8.4923 -7.5886 45 1 0.0769 -1.3500 -1.6637 46 1 -0.6956 -2.6123 -0.6700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753656682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:29 Heat of formation + Delta-G solvation = -59.385349 kcal Electronic energy + Delta-G solvation = -27753.697226 eV Core-core repulsion = 23644.668350 eV Total energy + Delta-G solvation = -4109.028876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.54616 -39.73063 -38.55820 -37.66572 -34.82047 -34.33203 -33.30556 -32.13007 -31.45074 -31.06724 -28.75000 -27.29574 -26.39667 -24.98754 -23.93304 -23.31970 -22.39147 -21.75561 -20.61661 -19.63730 -17.66939 -17.31642 -17.15204 -17.04717 -16.79913 -16.21872 -15.85199 -15.69462 -15.38525 -15.06824 -14.46571 -14.41050 -14.25071 -14.08032 -13.95260 -13.56162 -13.41931 -13.29305 -12.99933 -12.91391 -12.65698 -12.46326 -12.04483 -11.76140 -11.55426 -11.13729 -10.88462 -10.77344 -10.45876 -10.28823 -10.21528 -10.11783 -10.07647 -9.80123 -9.76139 -9.68382 -9.42584 -9.12479 -8.90550 -8.59018 -6.80331 -5.88272 -3.32398 0.65640 0.92001 2.67630 2.75608 3.31921 3.38784 3.40630 3.44295 3.87440 4.12967 4.21186 4.38066 4.40284 4.45303 4.58811 4.62683 4.71523 4.88011 4.91334 4.95988 5.00868 5.14884 5.24752 5.31817 5.39720 5.49896 5.58029 5.72581 5.81361 5.86158 5.88419 5.97955 6.07276 6.19640 6.30898 6.32305 6.45291 6.57194 6.70210 6.74199 7.02399 7.43778 7.59630 7.60895 7.67060 7.78747 8.28708 8.31140 9.06701 9.69606 10.26483 11.19781 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.001826 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.987393 B =15331.145028 C =16082.439721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.108 3.892 11 C 0.050 3.950 12 O -0.391 6.391 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.134 3.866 16 N -0.718 5.718 17 C 0.509 3.491 18 O -0.523 6.523 19 C 0.044 3.956 20 O -0.356 6.356 21 C 0.105 3.895 22 C -0.141 4.141 23 C -0.053 4.053 24 C -0.176 4.176 25 C 0.103 3.897 26 N -0.488 5.488 27 C 0.122 3.878 28 C 0.152 3.848 29 H 0.256 0.744 30 H 0.027 0.973 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.402 0.598 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.096 0.904 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 -15.612 -19.804 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.004 4.004 14 H 0.074 0.926 15 C 0.011 3.989 16 N -0.371 5.371 17 C 0.293 3.707 18 O -0.398 6.398 19 C -0.036 4.036 20 O -0.274 6.274 21 C 0.028 3.972 22 C -0.143 4.143 23 C -0.079 4.079 24 C -0.196 4.196 25 C -0.054 4.054 26 N -0.196 5.196 27 C -0.035 4.035 28 C 0.025 3.975 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.236 0.764 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.174 0.826 44 H 0.174 0.826 45 H 0.114 0.886 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.168 -15.699 -19.394 25.297 hybrid contribution 1.934 1.433 -0.231 2.418 sum -2.234 -14.266 -19.625 24.365 Atomic orbital electron populations 1.70019 1.05247 1.25837 1.53395 1.25076 0.95371 0.98546 1.00627 0.86236 0.79053 0.83399 0.77750 1.21335 1.21628 1.20396 1.19197 0.92657 0.84480 1.42383 0.91301 1.44038 1.33715 1.01367 1.52646 1.21604 0.98647 0.87564 0.93981 1.23006 0.86132 0.99620 0.94012 1.87772 1.42222 1.31530 1.69473 1.23155 0.94947 0.86479 0.95835 0.92580 1.21437 0.97808 0.92211 0.87458 1.45847 1.15441 1.44510 1.31332 1.20142 0.84636 0.83246 0.82660 1.90751 1.24884 1.51690 1.72446 1.22237 0.88821 0.99159 0.93337 1.88112 1.33669 1.62058 1.43601 1.21263 0.93884 0.93368 0.88692 1.20572 0.97530 0.98771 0.97455 1.21548 0.96967 0.95838 0.93522 1.22168 0.94818 1.00653 1.01965 1.22855 0.99095 0.90950 0.92524 1.67749 1.20375 1.23943 1.07539 1.22733 0.87869 0.95882 0.97002 1.21316 0.89526 0.97630 0.89008 0.93345 0.95530 0.91960 0.90001 0.93862 0.90624 0.89904 0.76382 0.90197 0.90024 0.91889 0.91671 0.84606 0.84511 0.82609 0.82576 0.88553 0.94998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 11.14 55.49 0.62 -25.05 16 2 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 3 Si 0.91 21.20 29.59 -169.99 -5.03 16.17 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.89 9.65 -15.06 -0.15 -7.03 16 8 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 9 N -0.59 -14.53 3.05 -171.83 -0.52 -15.05 16 10 C 0.11 2.20 6.73 -3.54 -0.02 2.17 16 11 C 0.05 0.84 6.98 37.31 0.26 1.10 16 12 O -0.39 -6.94 10.13 -35.23 -0.36 -7.29 16 13 C 0.06 1.01 2.87 -26.58 -0.08 0.93 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.13 2.23 5.37 -4.05 -0.02 2.21 16 16 N -0.72 -9.69 5.45 -60.29 -0.33 -10.01 16 17 C 0.51 7.31 7.91 -10.98 -0.09 7.23 16 18 O -0.52 -10.14 16.50 -14.35 -0.24 -10.38 16 19 C 0.04 0.43 6.42 36.01 0.23 0.66 16 20 O -0.36 -4.22 9.86 -55.14 -0.54 -4.76 16 21 C 0.11 0.82 6.09 36.01 0.22 1.04 16 22 C -0.14 -1.27 5.53 -104.48 -0.58 -1.85 16 23 C -0.05 -0.42 9.86 -39.28 -0.39 -0.81 16 24 C -0.18 -1.28 10.11 -39.44 -0.40 -1.68 16 25 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16 26 N -0.49 -5.18 10.36 -13.25 -0.14 -5.32 16 27 C 0.12 1.19 10.86 -17.55 -0.19 1.00 16 28 C 0.15 3.52 4.73 -3.53 -0.02 3.50 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 35 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.40 4.36 8.35 -40.82 -0.34 4.02 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 40 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 41 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.10 2.46 6.14 -51.93 -0.32 2.14 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 386.98 15.07 5.83 5.83 Total: -1.00 -35.19 386.98 -9.16 -44.35 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.96 Total: 2.40 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.50 Total: 9.12 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.37 Total: -55.44 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.14 Total: -22.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.19 -9.16 -44.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753656682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.036 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds