Wall clock time and date at job start Tue Mar 31 2020 18:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00011 * 2 1 4 4 H 1.48501 * 109.47369 * 270.00189 * 3 2 1 5 5 H 1.48500 * 109.47149 * 30.00647 * 3 2 1 6 6 H 1.48503 * 109.46973 * 150.00052 * 3 2 1 7 7 C 1.38816 * 119.99452 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99273 * 196.90405 * 7 2 1 9 9 N 1.36932 * 120.00454 * 16.89622 * 7 2 1 10 10 C 1.47151 * 120.98361 * 206.22954 * 9 7 2 11 11 C 1.53291 * 108.38715 * 230.55868 * 10 9 7 12 12 O 1.42963 * 109.22588 * 307.70000 * 11 10 9 13 13 C 1.42960 * 114.16616 * 62.57642 * 12 11 10 14 14 H 1.09005 * 109.51427 * 57.39556 * 13 12 11 15 15 C 1.52995 * 109.51489 * 177.49980 * 13 12 11 16 16 N 1.46498 * 109.47258 * 300.00343 * 15 13 12 17 17 C 1.34774 * 120.00330 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99759 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99898 * 179.97438 * 17 16 15 20 20 O 1.42902 * 109.46673 * 179.97438 * 19 17 16 21 21 C 1.42903 * 113.99567 * 179.97438 * 20 19 17 22 22 C 1.50703 * 109.47056 * 179.97438 * 21 20 19 23 23 C 1.38673 * 120.41790 * 90.00148 * 22 21 20 24 24 C 1.38623 * 118.42051 * 180.02562 * 23 22 21 25 25 C 1.38228 * 119.16119 * 359.97438 * 24 23 22 26 26 N 1.31855 * 120.76613 * 0.02562 * 25 24 23 27 27 C 1.31886 * 121.72362 * 359.70130 * 26 25 24 28 28 C 1.47146 * 120.98144 * 26.25477 * 9 7 2 29 29 H 0.97005 * 120.00066 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.68327 * 110.83424 * 10 9 7 31 31 H 1.09004 * 109.71295 * 350.30361 * 10 9 7 32 32 H 1.08996 * 109.51471 * 187.76910 * 11 10 9 33 33 H 1.09007 * 109.51446 * 67.62137 * 11 10 9 34 34 H 1.09008 * 109.47143 * 59.99752 * 15 13 12 35 35 H 1.09004 * 109.47785 * 180.02562 * 15 13 12 36 36 H 0.97005 * 119.99765 * 359.97438 * 16 15 13 37 37 H 1.08996 * 109.46677 * 299.99188 * 19 17 16 38 38 H 1.09001 * 109.47309 * 59.99743 * 19 17 16 39 39 H 1.08995 * 109.47527 * 300.00086 * 21 20 19 40 40 H 1.09004 * 109.46970 * 60.00259 * 21 20 19 41 41 H 1.08000 * 120.78537 * 359.97438 * 23 22 21 42 42 H 1.07993 * 120.42074 * 180.02562 * 24 23 22 43 43 H 1.08003 * 119.62298 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.61982 * 180.31541 * 27 26 25 45 45 H 1.09001 * 109.68213 * 9.72198 * 28 9 7 46 46 H 1.09001 * 109.68442 * 249.16537 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0552 -1.2225 0.2714 9 7 1.3698 -2.3624 -0.3457 10 6 1.8341 -3.6635 0.1610 11 6 1.9819 -4.6204 -1.0274 12 8 0.7657 -4.6291 -1.7789 13 6 0.4249 -3.3660 -2.3553 14 1 1.2380 -3.0276 -2.9976 15 6 -0.8539 -3.5101 -3.1827 16 7 -0.6375 -4.4907 -4.2494 17 6 -1.6334 -4.7818 -5.1094 18 8 -2.7091 -4.2323 -4.9999 19 6 -1.4105 -5.7901 -6.2071 20 8 -2.6050 -5.9248 -6.9798 21 6 -2.5000 -6.8620 -8.0534 22 6 -3.8098 -6.9237 -8.7962 23 6 -4.0490 -6.0784 -9.8692 24 6 -5.2683 -6.1700 -10.5223 25 6 -6.1983 -7.0948 -10.0859 26 7 -5.9365 -7.8829 -9.0617 27 6 -4.7856 -7.8271 -8.4201 28 6 0.1974 -2.3448 -1.2347 29 1 -0.4850 0.8401 0.0004 30 1 1.1059 -4.0639 0.8664 31 1 2.7973 -3.5425 0.6569 32 1 2.1910 -5.6257 -0.6616 33 1 2.8010 -4.2863 -1.6643 34 1 -1.6669 -3.8468 -2.5393 35 1 -1.1129 -2.5469 -3.6222 36 1 0.2230 -4.9299 -4.3371 37 1 -0.5975 -5.4532 -6.8501 38 1 -1.1514 -6.7536 -5.7682 39 1 -1.7099 -6.5470 -8.7349 40 1 -2.2630 -7.8479 -7.6532 41 1 -3.3033 -5.3650 -10.1877 42 1 -5.4884 -5.5277 -11.3620 43 1 -7.1508 -7.1723 -10.5891 44 1 -4.6052 -8.4923 -7.5886 45 1 0.0769 -1.3500 -1.6637 46 1 -0.6956 -2.6123 -0.6700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753656682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:28 Heat of formation + Delta-G solvation = -84.937956 kcal Electronic energy + Delta-G solvation = -27754.805271 eV Core-core repulsion = 23644.668350 eV Total energy + Delta-G solvation = -4110.136920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18007 -40.87760 -39.99820 -38.50982 -36.45711 -35.81964 -33.94197 -33.26766 -32.77708 -32.54936 -29.79912 -28.83337 -27.33747 -26.33413 -25.03473 -24.53878 -23.28446 -22.97845 -21.85335 -21.21917 -18.95464 -18.48738 -17.98193 -17.85346 -17.71561 -17.45814 -17.09585 -16.75632 -16.50411 -16.30001 -16.07079 -15.53458 -15.48207 -15.25551 -15.03844 -14.73522 -14.62398 -14.58294 -14.20535 -13.98489 -13.84818 -13.29218 -13.16777 -13.01968 -12.97311 -12.68611 -12.52995 -12.32300 -12.17328 -12.09070 -11.87660 -11.31778 -10.99468 -10.82184 -10.77165 -10.73604 -10.55758 -10.40554 -10.15034 -10.04323 -8.76485 -7.92062 -5.39810 0.04951 0.31793 1.46271 1.47375 1.56627 1.58808 1.82484 2.46658 2.71623 2.79697 3.18076 3.24472 3.49576 3.55824 3.73233 3.88342 3.92215 4.05491 4.06276 4.06949 4.08089 4.24856 4.28199 4.33754 4.44581 4.46528 4.51022 4.52440 4.60740 4.68378 4.71899 4.83294 4.84453 4.97909 5.07476 5.15893 5.23015 5.28597 5.34550 5.52427 5.59521 5.74468 6.03474 6.25916 6.32330 6.57479 6.98740 7.04517 7.24287 7.73805 8.27235 9.13650 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021768 B = 0.001826 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.987393 B =15331.145028 C =16082.439721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.265 4.265 8 H 0.076 0.924 9 N -0.613 5.613 10 C 0.100 3.900 11 C 0.058 3.942 12 O -0.389 6.389 13 C 0.079 3.921 14 H 0.069 0.931 15 C 0.144 3.856 16 N -0.704 5.704 17 C 0.504 3.496 18 O -0.582 6.582 19 C 0.052 3.948 20 O -0.395 6.395 21 C 0.104 3.896 22 C -0.154 4.154 23 C -0.064 4.064 24 C -0.175 4.175 25 C 0.088 3.912 26 N -0.520 5.520 27 C 0.101 3.899 28 C 0.157 3.843 29 H 0.251 0.749 30 H 0.014 0.986 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.419 0.581 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.155 0.845 42 H 0.165 0.835 43 H 0.178 0.822 44 H 0.164 0.836 45 H 0.066 0.934 46 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -16.974 -21.691 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.799 3.201 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.190 1.190 7 C -0.395 4.395 8 H 0.093 0.907 9 N -0.338 5.338 10 C -0.026 4.026 11 C -0.020 4.020 12 O -0.308 6.308 13 C 0.019 3.981 14 H 0.087 0.913 15 C 0.019 3.981 16 N -0.358 5.358 17 C 0.291 3.709 18 O -0.462 6.462 19 C -0.027 4.027 20 O -0.315 6.315 21 C 0.028 3.972 22 C -0.156 4.156 23 C -0.090 4.090 24 C -0.194 4.194 25 C -0.069 4.069 26 N -0.229 5.229 27 C -0.055 4.055 28 C 0.030 3.970 29 H 0.060 0.940 30 H 0.032 0.968 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.257 0.743 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.173 0.827 42 H 0.182 0.818 43 H 0.195 0.805 44 H 0.181 0.819 45 H 0.085 0.915 46 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -1.659 -17.125 -21.292 27.374 hybrid contribution 1.162 1.807 0.400 2.185 sum -0.497 -15.318 -20.891 25.910 Atomic orbital electron populations 1.70191 1.06803 1.26074 1.55186 1.25869 0.96071 1.01770 1.01072 0.85207 0.78054 0.79145 0.77683 1.20928 1.22498 1.19014 1.19576 0.93088 0.85527 1.41301 0.90672 1.44340 1.33640 1.02428 1.53384 1.21853 0.98528 0.86503 0.95668 1.23085 0.85844 1.00675 0.92360 1.87788 1.43083 1.30501 1.69413 1.22728 0.95840 0.85428 0.94104 0.91315 1.21062 0.96283 0.92714 0.88003 1.45634 1.16347 1.43625 1.30178 1.21116 0.83458 0.83187 0.83130 1.90728 1.27284 1.54095 1.74062 1.22311 0.89116 0.98957 0.92290 1.88055 1.35066 1.63427 1.44920 1.21463 0.93812 0.93742 0.88174 1.20819 0.98114 0.98729 0.97957 1.21921 0.97758 0.95924 0.93361 1.22507 0.94249 1.00315 1.02349 1.23320 1.00376 0.90930 0.92242 1.67725 1.21156 1.25296 1.08742 1.22970 0.88192 0.96801 0.97568 1.21103 0.88249 0.97633 0.89976 0.93991 0.96842 0.90889 0.85995 0.92479 0.92743 0.90913 0.74337 0.86435 0.86706 0.89375 0.89629 0.82737 0.81755 0.80500 0.81923 0.91547 0.98444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.35 11.14 21.65 0.24 -55.11 16 2 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 3 Si 0.97 44.00 29.59 68.60 2.03 46.03 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.27 -14.19 9.65 84.04 0.81 -13.38 16 8 H 0.08 3.85 7.88 -2.91 -0.02 3.82 16 9 N -0.61 -30.18 3.05 -697.54 -2.13 -32.30 16 10 C 0.10 3.93 6.73 86.35 0.58 4.51 16 11 C 0.06 1.74 6.98 72.08 0.50 2.24 16 12 O -0.39 -12.93 10.13 -148.98 -1.51 -14.44 16 13 C 0.08 2.82 2.87 30.69 0.09 2.91 16 14 H 0.07 2.34 8.14 -2.38 -0.02 2.33 16 15 C 0.14 4.85 5.37 86.38 0.46 5.31 16 16 N -0.70 -17.84 5.45 -463.06 -2.52 -20.36 16 17 C 0.50 13.87 7.91 87.66 0.69 14.56 16 18 O -0.58 -23.03 16.50 16.01 0.26 -22.77 16 19 C 0.05 0.85 6.42 71.24 0.46 1.30 16 20 O -0.40 -8.60 9.86 -129.94 -1.28 -9.88 16 21 C 0.10 1.36 6.09 71.24 0.43 1.79 16 22 C -0.15 -2.60 5.53 -19.77 -0.11 -2.71 16 23 C -0.06 -0.93 9.86 22.47 0.22 -0.71 16 24 C -0.17 -2.29 10.11 22.36 0.23 -2.06 16 25 C 0.09 1.41 11.18 84.69 0.95 2.35 16 26 N -0.52 -11.12 10.36 -195.84 -2.03 -13.14 16 27 C 0.10 1.96 10.86 84.67 0.92 2.88 16 28 C 0.16 7.52 4.73 86.36 0.41 7.93 16 29 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 30 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 2.67 7.96 -2.38 -0.02 2.65 16 32 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.42 7.73 8.35 -92.70 -0.77 6.95 16 37 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 0.68 8.10 -2.39 -0.02 0.66 16 40 H 0.09 0.73 8.09 -2.38 -0.02 0.71 16 41 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 43 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 44 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 45 H 0.07 3.56 6.14 -2.39 -0.01 3.55 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 Total: -1.00 -80.62 386.98 0.34 -80.27 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.21 Total: 17.23 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 7.07 Total: 24.47 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -6.44 Total: -120.92 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -2.53 Total: -47.08 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -80.62 0.34 -80.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753656682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.663 kcal (2) G-P(sol) polarization free energy of solvation -80.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds