Wall clock time and date at job start Tue Mar 31 2020 18:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86791 * 120.00125 * 2 1 4 4 H 1.48504 * 109.47220 * 270.00194 * 3 2 1 5 5 H 1.48497 * 109.47271 * 30.00304 * 3 2 1 6 6 H 1.48504 * 109.47162 * 150.00443 * 3 2 1 7 7 C 1.38958 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99584 * 359.97438 * 7 2 1 9 9 N 1.37093 * 120.00094 * 179.97438 * 7 2 1 10 10 C 1.34768 * 120.00138 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00026 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00100 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47019 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99779 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47120 * 179.97438 * 14 13 12 16 16 H 1.08994 * 109.47288 * 305.00282 * 15 14 13 17 17 O 1.42900 * 109.46736 * 64.99942 * 15 14 13 18 18 C 1.53003 * 109.46990 * 184.99695 * 15 14 13 19 19 N 1.46499 * 109.46708 * 180.02562 * 18 15 14 20 20 C 1.34784 * 119.99893 * 180.02562 * 19 18 15 21 21 O 1.21283 * 119.99649 * 0.02562 * 20 19 18 22 22 C 1.50697 * 119.99774 * 179.72962 * 20 19 18 23 23 C 1.50700 * 109.46617 * 180.02562 * 22 20 19 24 24 C 1.38239 * 119.99928 * 269.72082 * 23 22 20 25 25 C 1.38231 * 120.00184 * 179.77059 * 24 23 22 26 26 C 1.38238 * 119.99833 * 0.50596 * 25 24 23 27 27 C 1.38227 * 120.00051 * 359.74745 * 26 25 24 28 28 C 1.38229 * 120.00371 * 90.00212 * 23 22 20 29 29 H 0.96996 * 119.99778 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99820 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47006 * 60.00338 * 12 10 9 32 32 H 1.08995 * 109.47417 * 299.99927 * 12 10 9 33 33 H 1.00900 * 110.99617 * 303.94945 * 13 12 10 34 34 H 1.08999 * 109.47272 * 59.99945 * 14 13 12 35 35 H 1.08996 * 109.47352 * 300.00141 * 14 13 12 36 36 H 0.96708 * 114.00229 * 60.00681 * 17 15 14 37 37 H 1.08998 * 109.46692 * 60.00542 * 18 15 14 38 38 H 1.08994 * 109.47584 * 300.00406 * 18 15 14 39 39 H 0.97005 * 120.00261 * 0.02562 * 19 18 15 40 40 H 1.09001 * 109.46809 * 299.99238 * 22 20 19 41 41 H 1.08993 * 109.47525 * 59.99679 * 22 20 19 42 42 H 1.08005 * 120.00032 * 359.97438 * 24 23 22 43 43 H 1.07995 * 120.00091 * 180.23151 * 25 24 23 44 44 H 1.08001 * 120.00101 * 179.72935 * 26 25 24 45 45 H 1.08004 * 120.00470 * 179.97438 * 27 26 25 46 46 H 1.08005 * 120.00055 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0536 -2.3706 -0.0021 11 8 3.4472 -3.4210 -0.0021 12 6 5.5607 -2.3707 -0.0033 13 7 6.0503 -3.7557 -0.0037 14 6 7.5188 -3.7949 -0.0042 15 6 7.9901 -5.2505 -0.0039 16 1 7.5415 -5.7775 0.8381 17 8 7.5946 -5.8794 -1.2247 18 6 9.5144 -5.2930 0.1212 19 7 9.9657 -6.6867 0.1208 20 6 11.2795 -6.9697 0.2225 21 8 12.0881 -6.0704 0.3148 22 6 11.7432 -8.4036 0.2282 23 6 13.2446 -8.4454 0.3514 24 6 14.0317 -8.4433 -0.7850 25 6 15.4089 -8.4769 -0.6720 26 6 15.9990 -8.5231 0.5773 27 6 15.2119 -8.5305 1.7136 28 6 13.8346 -8.4917 1.6006 29 1 -0.4849 0.8400 0.0004 30 1 3.8648 -0.3634 -0.0014 31 1 5.9247 -1.8573 0.8867 32 1 5.9234 -1.8565 -0.8933 33 1 5.6754 -4.2719 0.7781 34 1 7.8960 -3.2911 0.8857 35 1 7.8954 -3.2909 -0.8942 36 1 7.9579 -5.4620 -2.0178 37 1 9.8159 -4.8133 1.0523 38 1 9.9629 -4.7660 -0.7209 39 1 9.3189 -7.4060 0.0474 40 1 11.2950 -8.9269 1.0729 41 1 11.4409 -8.8870 -0.7006 42 1 13.5706 -8.4121 -1.7612 43 1 16.0239 -8.4714 -1.5597 44 1 17.0749 -8.5537 0.6656 45 1 15.6728 -8.5670 2.6896 46 1 13.2196 -8.4975 2.4885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753915323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:06 Heat of formation + Delta-G solvation = -94.332336 kcal Electronic energy + Delta-G solvation = -26759.987148 eV Core-core repulsion = 22649.442857 eV Total energy + Delta-G solvation = -4110.544291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43208 -39.21463 -38.60214 -37.91308 -35.09582 -34.49433 -33.86301 -33.28869 -31.68229 -31.23087 -30.55160 -28.40732 -26.95651 -24.83142 -23.19671 -22.93625 -22.09125 -21.97741 -20.55849 -19.40205 -18.39182 -17.75084 -17.18891 -17.00760 -16.60862 -16.01060 -15.89570 -15.59778 -15.30924 -15.23676 -14.97505 -14.67617 -14.60072 -13.94106 -13.76539 -13.65379 -13.53031 -13.33673 -13.24560 -12.85654 -12.79370 -12.66775 -12.25659 -12.14928 -11.94267 -11.72238 -11.50616 -11.35972 -11.24293 -11.16431 -10.60985 -10.43249 -10.14856 -9.98206 -9.58501 -9.44441 -9.24027 -9.07421 -8.60959 -8.21627 -8.16813 -6.32144 -3.83652 0.97431 1.08189 2.30836 2.76245 3.01137 3.05885 3.14080 3.48706 3.72135 3.90180 4.09142 4.21423 4.22048 4.43239 4.51222 4.59096 4.65491 4.68614 4.76165 4.83237 4.88293 4.92042 5.01897 5.15821 5.16256 5.21966 5.28551 5.34292 5.42080 5.58414 5.63792 5.68778 5.75797 5.77577 5.90286 6.03002 6.10447 6.17352 6.21872 6.65213 6.98439 7.13831 7.40969 7.54789 7.56986 7.88837 8.13352 8.58574 8.93910 9.41199 9.81378 10.80989 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.037882 B = 0.001423 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.954482 B =19675.998564 C =19997.060670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.449 3.551 11 O -0.563 6.563 12 C 0.048 3.952 13 N -0.658 5.658 14 C 0.030 3.970 15 C 0.101 3.899 16 H 0.105 0.895 17 O -0.543 6.543 18 C 0.088 3.912 19 N -0.725 5.725 20 C 0.513 3.487 21 O -0.533 6.533 22 C -0.103 4.103 23 C -0.066 4.066 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.106 4.106 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.352 0.648 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.375 0.625 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.407 0.593 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.898 -15.356 1.026 34.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.445 6.445 12 C -0.085 4.085 13 N -0.291 5.291 14 C -0.101 4.101 15 C 0.041 3.959 16 H 0.123 0.877 17 O -0.347 6.347 18 C -0.037 4.037 19 N -0.378 5.378 20 C 0.299 3.701 21 O -0.409 6.409 22 C -0.143 4.143 23 C -0.067 4.067 24 C -0.124 4.124 25 C -0.138 4.138 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.124 4.124 29 H 0.084 0.916 30 H 0.203 0.797 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.171 0.829 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.222 0.778 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.242 0.758 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 30.465 -15.744 0.825 34.302 hybrid contribution 0.748 1.938 0.557 2.151 sum 31.213 -13.806 1.382 34.158 Atomic orbital electron populations 1.69622 1.05645 1.27501 1.49324 1.25037 0.95489 0.97962 0.97629 0.86666 0.79722 0.84037 0.78905 1.19591 1.20179 1.19571 1.19441 0.79239 0.96660 1.48119 0.86263 1.42200 1.07545 1.06141 1.67118 1.19679 0.88144 0.84589 0.84090 1.90576 1.69381 1.30909 1.53590 1.21727 0.95216 0.90307 1.01264 1.59964 1.04975 1.12574 1.51593 1.22581 0.89938 0.96050 1.01531 1.22099 0.90976 0.93652 0.89178 0.87712 1.86636 1.75566 1.57502 1.15031 1.22052 0.95219 0.83214 1.03206 1.45884 1.07678 1.08891 1.75308 1.20561 0.82083 0.91280 0.76192 1.90744 1.53340 1.48307 1.48533 1.20680 0.93646 0.94509 1.05473 1.19264 0.93567 1.00146 0.93675 1.20994 0.93860 0.99601 0.97936 1.21115 0.94752 1.00267 0.97625 1.21158 0.99821 1.00262 0.92711 1.21115 0.93725 1.00294 0.98635 1.20991 0.95045 0.99631 0.96721 0.91603 0.79703 0.93794 0.89476 0.82873 0.94376 0.90386 0.77764 0.90585 0.91007 0.75807 0.87785 0.87727 0.86221 0.86061 0.86165 0.86069 0.86249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.70 13.96 55.50 0.77 -24.93 16 2 C 0.04 1.14 5.50 -17.46 -0.10 1.05 16 3 Si 0.88 19.28 27.73 -169.99 -4.71 14.57 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 8 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 9 N -0.59 -14.00 5.09 -10.96 -0.06 -14.06 16 10 C 0.45 10.13 7.82 -10.99 -0.09 10.04 16 11 O -0.56 -15.12 15.78 5.55 0.09 -15.03 16 12 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 13 N -0.66 -9.63 6.08 -115.05 -0.70 -10.33 16 14 C 0.03 0.30 5.32 -3.82 -0.02 0.28 16 15 C 0.10 0.86 3.23 -26.73 -0.09 0.77 16 16 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 17 O -0.54 -5.34 13.03 -35.23 -0.46 -5.80 16 18 C 0.09 0.69 5.34 -4.04 -0.02 0.67 16 19 N -0.72 -5.24 5.45 -60.30 -0.33 -5.57 16 20 C 0.51 4.59 7.82 -10.98 -0.09 4.51 16 21 O -0.53 -7.08 16.03 5.56 0.09 -6.99 16 22 C -0.10 -0.63 5.83 -29.04 -0.17 -0.80 16 23 C -0.07 -0.54 4.37 -104.63 -0.46 -1.00 16 24 C -0.11 -0.85 9.70 -39.58 -0.38 -1.24 16 25 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 26 C -0.12 -0.89 10.05 -39.59 -0.40 -1.28 16 27 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 28 C -0.11 -0.85 9.70 -39.58 -0.38 -1.24 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.37 7.67 5.76 -40.82 -0.24 7.44 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.35 5.40 8.43 -39.29 -0.33 5.07 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.38 2.73 9.05 45.56 0.41 3.14 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.41 2.26 8.35 -40.82 -0.34 1.92 16 40 H 0.10 0.42 8.08 -51.93 -0.42 0.00 16 41 H 0.10 0.43 8.08 -51.93 -0.42 0.01 16 42 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 46 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -37.15 395.72 -8.47 -45.62 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -5.96 Total: 15.46 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -3.17 Total: 1.09 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.31 Total: -54.88 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.28 Total: -27.83 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.15 -8.47 -45.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753915323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.709 kcal (2) G-P(sol) polarization free energy of solvation -37.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds