Wall clock time and date at job start Tue Mar 31 2020 18:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86791 * 120.00125 * 2 1 4 4 H 1.48504 * 109.47220 * 270.00194 * 3 2 1 5 5 H 1.48497 * 109.47271 * 30.00304 * 3 2 1 6 6 H 1.48504 * 109.47162 * 150.00443 * 3 2 1 7 7 C 1.38958 * 119.99861 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99584 * 359.97438 * 7 2 1 9 9 N 1.37093 * 120.00094 * 179.97438 * 7 2 1 10 10 C 1.34768 * 120.00138 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00026 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00100 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47019 * 179.97438 * 12 10 9 14 14 C 1.46898 * 110.99779 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47120 * 179.97438 * 14 13 12 16 16 H 1.08994 * 109.47288 * 305.00282 * 15 14 13 17 17 O 1.42900 * 109.46736 * 64.99942 * 15 14 13 18 18 C 1.53003 * 109.46990 * 184.99695 * 15 14 13 19 19 N 1.46499 * 109.46708 * 180.02562 * 18 15 14 20 20 C 1.34784 * 119.99893 * 180.02562 * 19 18 15 21 21 O 1.21283 * 119.99649 * 0.02562 * 20 19 18 22 22 C 1.50697 * 119.99774 * 179.72962 * 20 19 18 23 23 C 1.50700 * 109.46617 * 180.02562 * 22 20 19 24 24 C 1.38239 * 119.99928 * 269.72082 * 23 22 20 25 25 C 1.38231 * 120.00184 * 179.77059 * 24 23 22 26 26 C 1.38238 * 119.99833 * 0.50596 * 25 24 23 27 27 C 1.38227 * 120.00051 * 359.74745 * 26 25 24 28 28 C 1.38229 * 120.00371 * 90.00212 * 23 22 20 29 29 H 0.96996 * 119.99778 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99820 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47006 * 60.00338 * 12 10 9 32 32 H 1.08995 * 109.47417 * 299.99927 * 12 10 9 33 33 H 1.00900 * 110.99617 * 303.94945 * 13 12 10 34 34 H 1.08999 * 109.47272 * 59.99945 * 14 13 12 35 35 H 1.08996 * 109.47352 * 300.00141 * 14 13 12 36 36 H 0.96708 * 114.00229 * 60.00681 * 17 15 14 37 37 H 1.08998 * 109.46692 * 60.00542 * 18 15 14 38 38 H 1.08994 * 109.47584 * 300.00406 * 18 15 14 39 39 H 0.97005 * 120.00261 * 0.02562 * 19 18 15 40 40 H 1.09001 * 109.46809 * 299.99238 * 22 20 19 41 41 H 1.08993 * 109.47525 * 59.99679 * 22 20 19 42 42 H 1.08005 * 120.00032 * 359.97438 * 24 23 22 43 43 H 1.07995 * 120.00091 * 180.23151 * 25 24 23 44 44 H 1.08001 * 120.00101 * 179.72935 * 26 25 24 45 45 H 1.08004 * 120.00470 * 179.97438 * 27 26 25 46 46 H 1.08005 * 120.00055 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 -0.0011 10 6 4.0536 -2.3706 -0.0021 11 8 3.4472 -3.4210 -0.0021 12 6 5.5607 -2.3707 -0.0033 13 7 6.0503 -3.7557 -0.0037 14 6 7.5188 -3.7949 -0.0042 15 6 7.9901 -5.2505 -0.0039 16 1 7.5415 -5.7775 0.8381 17 8 7.5946 -5.8794 -1.2247 18 6 9.5144 -5.2930 0.1212 19 7 9.9657 -6.6867 0.1208 20 6 11.2795 -6.9697 0.2225 21 8 12.0881 -6.0704 0.3148 22 6 11.7432 -8.4036 0.2282 23 6 13.2446 -8.4454 0.3514 24 6 14.0317 -8.4433 -0.7850 25 6 15.4089 -8.4769 -0.6720 26 6 15.9990 -8.5231 0.5773 27 6 15.2119 -8.5305 1.7136 28 6 13.8346 -8.4917 1.6006 29 1 -0.4849 0.8400 0.0004 30 1 3.8648 -0.3634 -0.0014 31 1 5.9247 -1.8573 0.8867 32 1 5.9234 -1.8565 -0.8933 33 1 5.6754 -4.2719 0.7781 34 1 7.8960 -3.2911 0.8857 35 1 7.8954 -3.2909 -0.8942 36 1 7.9579 -5.4620 -2.0178 37 1 9.8159 -4.8133 1.0523 38 1 9.9629 -4.7660 -0.7209 39 1 9.3189 -7.4060 0.0474 40 1 11.2950 -8.9269 1.0729 41 1 11.4409 -8.8870 -0.7006 42 1 13.5706 -8.4121 -1.7612 43 1 16.0239 -8.4714 -1.5597 44 1 17.0749 -8.5537 0.6656 45 1 15.6728 -8.5670 2.6896 46 1 13.2196 -8.4975 2.4885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753915323.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:06 Heat of formation + Delta-G solvation = -126.560758 kcal Electronic energy + Delta-G solvation = -26761.384678 eV Core-core repulsion = 22649.442857 eV Total energy + Delta-G solvation = -4111.941820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.07433 -40.33021 -39.74635 -38.81166 -36.35772 -35.70646 -35.20329 -33.82395 -33.74598 -31.75233 -31.40141 -29.26272 -28.04247 -26.27372 -24.41845 -23.46436 -22.80963 -22.57792 -21.31345 -21.16237 -20.27068 -18.42445 -18.07597 -17.68689 -17.49256 -17.17072 -16.86351 -16.62961 -16.35098 -16.21875 -15.84705 -15.72385 -15.46244 -15.16350 -14.95401 -14.56334 -14.52003 -14.40564 -14.25523 -13.94856 -13.76962 -13.51982 -13.35373 -13.25006 -12.99157 -12.83740 -12.68504 -12.41231 -11.99840 -11.98052 -11.94763 -11.85486 -11.51484 -11.18614 -10.89847 -10.41649 -10.24859 -10.10910 -9.78756 -9.61542 -9.29442 -8.41331 -6.02431 0.43253 0.53406 1.30267 1.36035 1.44784 1.65218 1.95831 2.14406 2.23197 2.72898 2.95505 3.15027 3.33621 3.57599 3.70735 3.83500 3.94395 3.96664 4.11268 4.13991 4.17329 4.22486 4.29333 4.39253 4.42781 4.51343 4.53537 4.61338 4.66385 4.70443 4.75306 4.79590 5.08026 5.14537 5.17599 5.40569 5.52365 5.57649 5.64277 5.67766 5.89224 6.02589 6.14296 6.34951 6.55467 6.59738 6.88153 6.88576 7.26447 7.39795 7.96737 8.76381 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.037882 B = 0.001423 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.954482 B =19675.998564 C =19997.060670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.966 3.034 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.331 4.331 8 H 0.054 0.946 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.615 6.615 12 C 0.062 3.938 13 N -0.679 5.679 14 C 0.031 3.969 15 C 0.113 3.887 16 H 0.103 0.897 17 O -0.560 6.560 18 C 0.096 3.904 19 N -0.715 5.715 20 C 0.513 3.487 21 O -0.581 6.581 22 C -0.098 4.098 23 C -0.081 4.081 24 C -0.123 4.123 25 C -0.132 4.132 26 C -0.133 4.133 27 C -0.132 4.132 28 C -0.124 4.124 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.344 0.656 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.386 0.614 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.416 0.584 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.874 -14.099 1.040 36.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.213 4.213 3 Si 0.786 3.214 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.154 1.154 7 C -0.460 4.460 8 H 0.073 0.927 9 N -0.233 5.233 10 C 0.235 3.765 11 O -0.499 6.499 12 C -0.070 4.070 13 N -0.312 5.312 14 C -0.098 4.098 15 C 0.053 3.947 16 H 0.121 0.879 17 O -0.366 6.366 18 C -0.029 4.029 19 N -0.367 5.367 20 C 0.300 3.700 21 O -0.461 6.461 22 C -0.137 4.137 23 C -0.081 4.081 24 C -0.141 4.141 25 C -0.150 4.150 26 C -0.151 4.151 27 C -0.150 4.150 28 C -0.142 4.142 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.162 0.838 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.235 0.765 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.254 0.746 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 33.457 -14.512 0.829 36.478 hybrid contribution -0.217 1.397 0.538 1.513 sum 33.240 -13.115 1.367 35.760 Atomic orbital electron populations 1.69807 1.08179 1.29256 1.50264 1.26120 0.96455 1.02713 0.96001 0.85353 0.79483 0.76663 0.79931 1.18184 1.20064 1.15387 1.19021 0.81589 0.94938 1.50465 0.92738 1.42029 1.05785 1.07645 1.67816 1.21035 0.91122 0.83265 0.81091 1.90553 1.71443 1.32833 1.55064 1.21644 0.89408 0.91942 1.04023 1.59962 1.07822 1.11716 1.51661 1.22672 0.86958 0.97221 1.02975 1.21968 0.91173 0.92835 0.88756 0.87931 1.86615 1.76005 1.58125 1.15897 1.21917 0.94479 0.83517 1.03006 1.45828 1.07523 1.09081 1.74315 1.21019 0.81937 0.91957 0.75065 1.90723 1.54539 1.49845 1.50950 1.20731 0.92565 0.92855 1.07581 1.19549 0.94742 1.00074 0.93750 1.21268 0.94370 0.99962 0.98542 1.21424 0.95011 1.00037 0.98485 1.21466 1.00930 1.00001 0.92654 1.21423 0.93871 1.00080 0.99606 1.21264 0.95622 1.00013 0.97262 0.91144 0.77445 0.90516 0.86748 0.83778 0.92585 0.89067 0.76544 0.90862 0.91124 0.74647 0.85548 0.85553 0.85285 0.84497 0.84365 0.84523 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.96 21.67 0.30 -56.03 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.97 38.46 27.73 68.60 1.90 40.37 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.23 -7.65 6.52 99.48 0.65 -7.01 16 7 C -0.33 -19.40 10.16 84.04 0.85 -18.55 16 8 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -27.63 5.09 -306.98 -1.56 -29.20 16 10 C 0.45 19.93 7.82 87.66 0.69 20.61 16 11 O -0.61 -34.08 15.78 -3.07 -0.05 -34.13 16 12 C 0.06 1.79 6.17 85.56 0.53 2.32 16 13 N -0.68 -18.40 6.08 -517.92 -3.15 -21.55 16 14 C 0.03 0.53 5.32 86.30 0.46 0.99 16 15 C 0.11 1.68 3.23 30.60 0.10 1.77 16 16 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 17 O -0.56 -9.99 13.03 -148.98 -1.94 -11.93 16 18 C 0.10 1.31 5.34 86.38 0.46 1.77 16 19 N -0.71 -9.04 5.45 -463.06 -2.52 -11.56 16 20 C 0.51 8.48 7.82 87.65 0.69 9.17 16 21 O -0.58 -15.08 16.03 -3.04 -0.05 -15.12 16 22 C -0.10 -1.02 5.83 29.10 0.17 -0.85 16 23 C -0.08 -1.24 4.37 -19.87 -0.09 -1.33 16 24 C -0.12 -1.90 9.70 22.27 0.22 -1.68 16 25 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 26 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 27 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 28 C -0.12 -1.91 9.70 22.27 0.22 -1.69 16 29 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.39 14.95 5.76 -92.71 -0.53 14.42 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.34 10.18 8.43 -89.69 -0.76 9.42 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.39 4.84 9.05 -74.05 -0.67 4.17 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.42 3.74 8.35 -92.70 -0.77 2.97 16 40 H 0.13 0.73 8.08 -2.39 -0.02 0.71 16 41 H 0.13 0.74 8.08 -2.39 -0.02 0.72 16 42 H 0.13 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 44 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 46 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -86.67 395.72 -3.39 -90.07 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -1.76 Total: 41.82 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.43 Total: 7.27 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -6.93 Total: -118.34 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -2.04 Total: -61.18 kcal Atomic # 14 Polarization: 38.46 SS G_CDS: 1.90 Total: 40.37 kcal Total: -86.67 -3.39 -90.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753915323.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.491 kcal (2) G-P(sol) polarization free energy of solvation -86.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds