Wall clock time and date at job start Tue Mar 31 2020 18:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47023 * 269.99674 * 3 2 1 5 5 H 1.48498 * 109.47098 * 29.99994 * 3 2 1 6 6 H 1.48503 * 109.47041 * 149.99919 * 3 2 1 7 7 C 1.38815 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00290 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99863 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00062 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47007 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47261 * 60.00083 * 11 10 9 13 13 O 1.42905 * 109.47264 * 299.99994 * 11 10 9 14 14 C 1.53002 * 109.47143 * 179.97438 * 11 10 9 15 15 N 1.46503 * 109.47189 * 184.99897 * 14 11 10 16 16 C 1.34774 * 119.99721 * 180.02562 * 15 14 11 17 17 O 1.21281 * 120.00014 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99737 * 179.97438 * 16 15 14 19 19 N 1.46500 * 109.47065 * 179.97438 * 18 16 15 20 20 C 1.34776 * 119.99966 * 180.02562 * 19 18 16 21 21 O 1.21281 * 119.99742 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00028 * 180.02562 * 20 19 18 23 23 C 1.50703 * 109.47127 * 179.97438 * 22 20 19 24 24 C 1.38230 * 120.00036 * 269.72530 * 23 22 20 25 25 C 1.38234 * 119.99964 * 179.76439 * 24 23 22 26 26 C 1.38241 * 119.99784 * 0.51056 * 25 24 23 27 27 C 1.38238 * 119.99997 * 359.74343 * 26 25 24 28 28 C 1.38234 * 119.99629 * 90.00167 * 23 22 20 29 29 H 0.96997 * 120.00179 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99840 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.46764 * 60.00258 * 10 9 7 32 32 H 1.09002 * 109.47092 * 300.00139 * 10 9 7 33 33 H 0.96702 * 113.99404 * 300.00214 * 13 11 10 34 34 H 1.08997 * 109.47011 * 304.99871 * 14 11 10 35 35 H 1.09005 * 109.46847 * 64.99998 * 14 11 10 36 36 H 0.96993 * 119.99759 * 359.97438 * 15 14 11 37 37 H 1.08996 * 109.47029 * 300.00325 * 18 16 15 38 38 H 1.09005 * 109.46976 * 60.00197 * 18 16 15 39 39 H 0.97001 * 120.00016 * 359.97438 * 19 18 16 40 40 H 1.08997 * 109.46916 * 299.99575 * 22 20 19 41 41 H 1.09005 * 109.47022 * 59.99749 * 22 20 19 42 42 H 1.08005 * 120.00329 * 359.97438 * 24 23 22 43 43 H 1.07999 * 120.00453 * 180.22805 * 25 24 23 44 44 H 1.07996 * 120.00221 * 179.72181 * 26 25 24 45 45 H 1.07999 * 120.00213 * 179.97438 * 27 26 25 46 46 H 1.08005 * 120.00067 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 1 5.8797 -1.6198 0.8889 13 8 5.9616 -1.4420 -1.1679 14 6 6.3814 -3.5164 -0.0004 15 7 7.8172 -3.2513 0.1199 16 6 8.6922 -4.2761 0.1414 17 8 8.2909 -5.4178 0.0615 18 6 10.1692 -4.0034 0.2646 19 7 10.9016 -5.2721 0.2654 20 6 12.2456 -5.2743 0.3672 21 8 12.8485 -4.2259 0.4578 22 6 12.9991 -6.5794 0.3674 23 6 14.4761 -6.3066 0.4908 24 6 15.2445 -6.1353 -0.6454 25 6 16.5984 -5.8803 -0.5321 26 6 17.1858 -5.8070 0.7171 27 6 16.4182 -5.9835 1.8532 28 6 15.0634 -6.2334 1.7400 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3622 -0.0007 31 1 3.8485 -3.0426 -0.8908 32 1 3.8491 -3.0423 0.8891 33 1 5.7547 -1.8909 -1.9990 34 1 6.0525 -4.1254 0.8416 35 1 6.1870 -4.0486 -0.9316 36 1 8.1380 -2.3381 0.1834 37 1 10.4976 -3.3942 -0.5774 38 1 10.3639 -3.4713 1.1958 39 1 10.4193 -6.1106 0.1933 40 1 12.6702 -7.1886 1.2093 41 1 12.8047 -7.1113 -0.5640 42 1 14.7866 -6.1974 -1.6216 43 1 17.1982 -5.7428 -1.4197 44 1 18.2444 -5.6123 0.8056 45 1 16.8771 -5.9267 2.8292 46 1 14.4636 -6.3712 2.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753936486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:25 Heat of formation + Delta-G solvation = -86.770058 kcal Electronic energy + Delta-G solvation = -26788.466943 eV Core-core repulsion = 22678.250577 eV Total energy + Delta-G solvation = -4110.216366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.68247 -39.93399 -38.94393 -37.88463 -34.93489 -34.59994 -34.21599 -33.32468 -31.56709 -31.24484 -30.19695 -28.91463 -27.16514 -25.26278 -22.95002 -22.47670 -22.07344 -21.61614 -20.81521 -20.64604 -18.33404 -17.78157 -17.27275 -17.00295 -16.57529 -16.50223 -16.10053 -16.05255 -15.52671 -15.38248 -15.00038 -14.71293 -14.57296 -14.12660 -13.83626 -13.77317 -13.51032 -13.43928 -13.39343 -13.25346 -12.81433 -12.69573 -12.44726 -12.32756 -12.07091 -11.52404 -11.37386 -11.35003 -10.91860 -10.88899 -10.43262 -10.37851 -10.20908 -9.83881 -9.60977 -9.60224 -9.37248 -9.25362 -9.09824 -8.97319 -7.30667 -5.81708 -3.18371 0.95273 1.06914 2.18178 2.26743 2.43582 3.07063 3.36654 3.41339 3.44224 3.48798 4.18710 4.25653 4.41397 4.44433 4.55457 4.56433 4.62127 4.64490 4.75065 4.80503 4.91363 4.97755 5.00028 5.03613 5.14538 5.27129 5.35901 5.46403 5.55456 5.61786 5.67478 5.71427 5.75590 5.87400 6.07716 6.09098 6.16140 6.20162 6.34699 6.47440 6.63719 7.06194 7.12247 7.68596 7.78953 7.81871 7.93746 8.36654 9.16039 9.87901 10.07229 11.36233 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035122 B = 0.001456 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.036253 B =19223.368826 C =19596.019024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.131 3.869 11 C 0.084 3.916 12 H 0.105 0.895 13 O -0.556 6.556 14 C 0.090 3.910 15 N -0.715 5.715 16 C 0.508 3.492 17 O -0.541 6.541 18 C 0.100 3.900 19 N -0.720 5.720 20 C 0.517 3.483 21 O -0.531 6.531 22 C -0.101 4.101 23 C -0.067 4.067 24 C -0.105 4.105 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.120 4.120 28 C -0.105 4.105 29 H 0.260 0.740 30 H 0.366 0.634 31 H 0.032 0.968 32 H 0.037 0.963 33 H 0.377 0.623 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.408 0.592 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.413 0.587 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.512 -14.981 0.658 36.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.718 3.282 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.107 0.893 9 N -0.396 5.396 10 C 0.003 3.997 11 C 0.024 3.976 12 H 0.123 0.877 13 O -0.362 6.362 14 C -0.034 4.034 15 N -0.367 5.367 16 C 0.293 3.707 17 O -0.419 6.419 18 C -0.028 4.028 19 N -0.376 5.376 20 C 0.303 3.697 21 O -0.406 6.406 22 C -0.141 4.141 23 C -0.068 4.068 24 C -0.123 4.123 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.138 4.138 28 C -0.123 4.123 29 H 0.070 0.930 30 H 0.200 0.800 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.225 0.775 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.243 0.757 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.250 0.750 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 33.576 -14.684 1.112 36.663 hybrid contribution 0.080 0.898 -0.361 0.971 sum 33.656 -13.786 0.751 36.378 Atomic orbital electron populations 1.69704 1.05152 1.25973 1.57140 1.24672 0.95236 0.97331 1.01680 0.86496 0.79095 0.84689 0.77891 1.20989 1.21765 1.20303 1.19038 0.80483 0.94792 1.43690 0.89255 1.42556 1.03950 1.01969 1.91090 1.21160 0.88410 0.90378 0.99784 1.22459 0.94768 0.90689 0.89642 0.87700 1.86554 1.85959 1.47726 1.15924 1.22145 0.79188 0.98631 1.03449 1.45831 1.07144 1.09759 1.73940 1.20483 0.88303 0.85467 0.76464 1.90709 1.79797 1.21359 1.50041 1.21048 0.88672 0.88041 1.04991 1.45728 1.06669 1.09625 1.75619 1.20557 0.81555 0.91548 0.76065 1.90753 1.68023 1.33440 1.48418 1.20658 0.92139 0.95660 1.05662 1.19249 0.93443 1.00346 0.93716 1.20994 0.94060 0.99352 0.97934 1.21118 0.94943 1.00056 0.97637 1.21167 0.99899 1.00108 0.92710 1.21118 0.93999 0.99993 0.98649 1.20995 0.95095 0.99528 0.96711 0.92971 0.80002 0.95000 0.94490 0.77547 0.89992 0.90623 0.75652 0.88192 0.88242 0.74953 0.87601 0.87605 0.86199 0.86045 0.86150 0.86045 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.97 55.49 0.78 -28.32 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.89 22.14 27.74 -169.99 -4.71 17.42 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 7 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 9 N -0.75 -17.26 5.30 -59.91 -0.32 -17.58 16 10 C 0.13 2.29 5.92 -4.04 -0.02 2.26 16 11 C 0.08 1.10 3.08 -26.73 -0.08 1.01 16 12 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 13 O -0.56 -7.47 13.03 -35.23 -0.46 -7.92 16 14 C 0.09 0.97 5.31 -4.04 -0.02 0.95 16 15 N -0.71 -6.55 5.50 -60.29 -0.33 -6.88 16 16 C 0.51 4.97 7.90 -10.99 -0.09 4.89 16 17 O -0.54 -6.94 15.67 5.56 0.09 -6.86 16 18 C 0.10 0.80 6.15 -5.19 -0.03 0.77 16 19 N -0.72 -5.71 5.53 -61.47 -0.34 -6.05 16 20 C 0.52 4.58 7.82 -10.99 -0.09 4.49 16 21 O -0.53 -6.73 16.03 5.56 0.09 -6.64 16 22 C -0.10 -0.61 5.83 -29.03 -0.17 -0.77 16 23 C -0.07 -0.53 4.37 -104.63 -0.46 -0.99 16 24 C -0.11 -0.82 9.70 -39.59 -0.38 -1.20 16 25 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 26 C -0.12 -0.85 10.05 -39.58 -0.40 -1.25 16 27 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 28 C -0.11 -0.82 9.70 -39.58 -0.38 -1.20 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.37 8.43 5.41 -40.82 -0.22 8.21 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.38 4.11 9.05 45.56 0.41 4.52 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.41 3.11 8.47 -40.82 -0.35 2.76 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.41 2.97 7.44 -40.82 -0.30 2.66 16 40 H 0.11 0.42 8.09 -51.93 -0.42 0.00 16 41 H 0.11 0.42 8.08 -51.93 -0.42 0.00 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 395.60 15.07 5.96 5.96 Total: -1.00 -36.94 395.60 -8.39 -45.33 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -5.96 Total: 12.17 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -3.17 Total: -0.64 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.21 Total: -58.83 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.28 Total: -21.42 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.94 -8.39 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753936486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.443 kcal (2) G-P(sol) polarization free energy of solvation -36.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds