Wall clock time and date at job start Tue Mar 31 2020 18:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99941 * 2 1 4 4 H 1.48496 * 109.47023 * 269.99674 * 3 2 1 5 5 H 1.48498 * 109.47098 * 29.99994 * 3 2 1 6 6 H 1.48503 * 109.47041 * 149.99919 * 3 2 1 7 7 C 1.38815 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00290 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99863 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00062 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47007 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.47261 * 60.00083 * 11 10 9 13 13 O 1.42905 * 109.47264 * 299.99994 * 11 10 9 14 14 C 1.53002 * 109.47143 * 179.97438 * 11 10 9 15 15 N 1.46503 * 109.47189 * 184.99897 * 14 11 10 16 16 C 1.34774 * 119.99721 * 180.02562 * 15 14 11 17 17 O 1.21281 * 120.00014 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99737 * 179.97438 * 16 15 14 19 19 N 1.46500 * 109.47065 * 179.97438 * 18 16 15 20 20 C 1.34776 * 119.99966 * 180.02562 * 19 18 16 21 21 O 1.21281 * 119.99742 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00028 * 180.02562 * 20 19 18 23 23 C 1.50703 * 109.47127 * 179.97438 * 22 20 19 24 24 C 1.38230 * 120.00036 * 269.72530 * 23 22 20 25 25 C 1.38234 * 119.99964 * 179.76439 * 24 23 22 26 26 C 1.38241 * 119.99784 * 0.51056 * 25 24 23 27 27 C 1.38238 * 119.99997 * 359.74343 * 26 25 24 28 28 C 1.38234 * 119.99629 * 90.00167 * 23 22 20 29 29 H 0.96997 * 120.00179 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99840 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.46764 * 60.00258 * 10 9 7 32 32 H 1.09002 * 109.47092 * 300.00139 * 10 9 7 33 33 H 0.96702 * 113.99404 * 300.00214 * 13 11 10 34 34 H 1.08997 * 109.47011 * 304.99871 * 14 11 10 35 35 H 1.09005 * 109.46847 * 64.99998 * 14 11 10 36 36 H 0.96993 * 119.99759 * 359.97438 * 15 14 11 37 37 H 1.08996 * 109.47029 * 300.00325 * 18 16 15 38 38 H 1.09005 * 109.46976 * 60.00197 * 18 16 15 39 39 H 0.97001 * 120.00016 * 359.97438 * 19 18 16 40 40 H 1.08997 * 109.46916 * 299.99575 * 22 20 19 41 41 H 1.09005 * 109.47022 * 59.99749 * 22 20 19 42 42 H 1.08005 * 120.00329 * 359.97438 * 24 23 22 43 43 H 1.07999 * 120.00453 * 180.22805 * 25 24 23 44 44 H 1.07996 * 120.00221 * 179.72181 * 26 25 24 45 45 H 1.07999 * 120.00213 * 179.97438 * 27 26 25 46 46 H 1.08005 * 120.00067 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 1 5.8797 -1.6198 0.8889 13 8 5.9616 -1.4420 -1.1679 14 6 6.3814 -3.5164 -0.0004 15 7 7.8172 -3.2513 0.1199 16 6 8.6922 -4.2761 0.1414 17 8 8.2909 -5.4178 0.0615 18 6 10.1692 -4.0034 0.2646 19 7 10.9016 -5.2721 0.2654 20 6 12.2456 -5.2743 0.3672 21 8 12.8485 -4.2259 0.4578 22 6 12.9991 -6.5794 0.3674 23 6 14.4761 -6.3066 0.4908 24 6 15.2445 -6.1353 -0.6454 25 6 16.5984 -5.8803 -0.5321 26 6 17.1858 -5.8070 0.7171 27 6 16.4182 -5.9835 1.8532 28 6 15.0634 -6.2334 1.7400 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3622 -0.0007 31 1 3.8485 -3.0426 -0.8908 32 1 3.8491 -3.0423 0.8891 33 1 5.7547 -1.8909 -1.9990 34 1 6.0525 -4.1254 0.8416 35 1 6.1870 -4.0486 -0.9316 36 1 8.1380 -2.3381 0.1834 37 1 10.4976 -3.3942 -0.5774 38 1 10.3639 -3.4713 1.1958 39 1 10.4193 -6.1106 0.1933 40 1 12.6702 -7.1886 1.2093 41 1 12.8047 -7.1113 -0.5640 42 1 14.7866 -6.1974 -1.6216 43 1 17.1982 -5.7428 -1.4197 44 1 18.2444 -5.6123 0.8056 45 1 16.8771 -5.9267 2.8292 46 1 14.4636 -6.3712 2.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753936486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:24 Heat of formation + Delta-G solvation = -117.265498 kcal Electronic energy + Delta-G solvation = -26789.789325 eV Core-core repulsion = 22678.250577 eV Total energy + Delta-G solvation = -4111.538748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39517 -40.64692 -39.56925 -38.98335 -36.22783 -35.59203 -35.31999 -33.84282 -33.48616 -31.74580 -31.32043 -29.77714 -27.99181 -26.54321 -24.02539 -23.45737 -22.86206 -22.72356 -21.61168 -21.34209 -19.81322 -19.00030 -18.01877 -17.72044 -17.39588 -17.24514 -16.98789 -16.85803 -16.53668 -16.22569 -16.04228 -15.69061 -15.46489 -15.40266 -15.05345 -14.81834 -14.39844 -14.26192 -14.19809 -14.07758 -13.91257 -13.72515 -13.35209 -13.33796 -13.15339 -12.86588 -12.81617 -12.24439 -11.99716 -11.88577 -11.84897 -11.84054 -11.32530 -11.11425 -11.03006 -10.90469 -10.32174 -10.14887 -9.77970 -9.62037 -9.32023 -8.04205 -5.37865 0.42900 0.54246 1.39610 1.42323 1.42946 1.49636 1.59797 1.72641 2.38997 2.48053 2.95439 3.26711 3.32664 3.51713 3.60219 3.69353 3.96598 3.98620 4.02859 4.09245 4.18080 4.21221 4.28587 4.30200 4.38082 4.41106 4.60593 4.60903 4.66985 4.71946 4.79989 4.92620 5.13586 5.16773 5.18376 5.24034 5.27558 5.58316 5.65165 5.68029 5.73450 6.14649 6.19294 6.37449 6.45660 6.76081 7.04620 7.07375 7.16795 7.82877 8.01591 9.17043 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035122 B = 0.001456 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.036253 B =19223.368826 C =19596.019024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.062 4.062 3 Si 0.959 3.041 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.253 1.253 7 C -0.239 4.239 8 H 0.057 0.943 9 N -0.753 5.753 10 C 0.123 3.877 11 C 0.104 3.896 12 H 0.110 0.890 13 O -0.564 6.564 14 C 0.101 3.899 15 N -0.706 5.706 16 C 0.513 3.487 17 O -0.572 6.572 18 C 0.103 3.897 19 N -0.715 5.715 20 C 0.518 3.482 21 O -0.573 6.573 22 C -0.097 4.097 23 C -0.081 4.081 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.132 4.132 27 C -0.132 4.132 28 C -0.122 4.122 29 H 0.258 0.742 30 H 0.369 0.631 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.388 0.612 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.418 0.582 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.418 0.582 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.939 -14.937 0.640 38.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.786 3.214 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.177 1.177 7 C -0.370 4.370 8 H 0.075 0.925 9 N -0.399 5.399 10 C -0.004 4.004 11 C 0.044 3.956 12 H 0.128 0.872 13 O -0.371 6.371 14 C -0.024 4.024 15 N -0.358 5.358 16 C 0.299 3.701 17 O -0.452 6.452 18 C -0.024 4.024 19 N -0.371 5.371 20 C 0.306 3.694 21 O -0.452 6.452 22 C -0.136 4.136 23 C -0.082 4.082 24 C -0.140 4.140 25 C -0.150 4.150 26 C -0.150 4.150 27 C -0.150 4.150 28 C -0.140 4.140 29 H 0.067 0.933 30 H 0.203 0.797 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.238 0.762 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.255 0.745 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.256 0.744 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 36.046 -14.673 1.087 38.934 hybrid contribution -0.685 0.765 -0.372 1.092 sum 35.361 -13.908 0.714 38.005 Atomic orbital electron populations 1.69883 1.07176 1.26762 1.59501 1.25505 0.96081 1.01315 1.02455 0.85359 0.78492 0.79500 0.78057 1.20581 1.22341 1.17722 1.19051 0.82763 0.93509 1.41631 0.92464 1.42545 1.02298 1.04131 1.90946 1.21406 0.91121 0.88113 0.99788 1.22166 0.91696 0.91779 0.89941 0.87218 1.86534 1.85750 1.48286 1.16545 1.21886 0.79874 0.97076 1.03514 1.45698 1.06352 1.10312 1.73472 1.20699 0.88906 0.84895 0.75577 1.90703 1.80369 1.22577 1.51528 1.21057 0.87225 0.88305 1.05791 1.45738 1.06547 1.09862 1.74960 1.21000 0.81553 0.91935 0.74919 1.90735 1.68777 1.35088 1.50576 1.20720 0.90690 0.94470 1.07740 1.19515 0.94462 1.00380 0.93804 1.21266 0.94544 0.99673 0.98547 1.21423 0.95189 0.99863 0.98478 1.21473 1.00951 0.99887 0.92666 1.21421 0.94141 0.99796 0.99601 1.21266 0.95641 0.99878 0.97248 0.93297 0.79716 0.94631 0.94380 0.76231 0.90203 0.90495 0.74472 0.87382 0.87370 0.74375 0.85449 0.85440 0.85233 0.84509 0.84392 0.84519 0.85259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.66 13.97 21.65 0.30 -62.36 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.96 45.36 27.74 68.60 1.90 47.27 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.25 -10.80 6.52 99.48 0.65 -10.16 16 7 C -0.24 -13.41 10.47 84.03 0.88 -12.53 16 8 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 9 N -0.75 -33.64 5.30 -343.46 -1.82 -35.46 16 10 C 0.12 4.09 5.92 86.38 0.51 4.61 16 11 C 0.10 2.45 3.08 30.59 0.09 2.54 16 12 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 13 O -0.56 -13.49 13.03 -148.98 -1.94 -15.43 16 14 C 0.10 1.95 5.31 86.38 0.46 2.41 16 15 N -0.71 -11.14 5.50 -463.05 -2.55 -13.69 16 16 C 0.51 8.97 7.90 87.66 0.69 9.66 16 17 O -0.57 -13.68 15.67 -3.03 -0.05 -13.72 16 18 C 0.10 1.45 6.15 85.63 0.53 1.97 16 19 N -0.72 -10.08 5.53 -466.78 -2.58 -12.66 16 20 C 0.52 8.44 7.82 87.66 0.69 9.12 16 21 O -0.57 -14.07 16.03 -3.03 -0.05 -14.11 16 22 C -0.10 -0.99 5.83 29.10 0.17 -0.82 16 23 C -0.08 -1.20 4.37 -19.87 -0.09 -1.29 16 24 C -0.12 -1.81 9.70 22.27 0.22 -1.59 16 25 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 26 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 27 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 28 C -0.12 -1.81 9.70 22.27 0.22 -1.60 16 29 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 30 H 0.37 16.05 5.41 -92.71 -0.50 15.55 16 31 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.39 7.40 9.05 -74.06 -0.67 6.73 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.50 8.14 -2.38 -0.02 1.49 16 36 H 0.42 5.14 8.47 -92.71 -0.79 4.35 16 37 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.42 5.23 7.44 -92.71 -0.69 4.55 16 40 H 0.13 0.73 8.09 -2.39 -0.02 0.71 16 41 H 0.13 0.72 8.08 -2.38 -0.02 0.71 16 42 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 43 H 0.14 1.31 8.06 -2.91 -0.02 1.28 16 44 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 45 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 46 H 0.13 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -80.05 395.60 -2.95 -83.00 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -1.67 Total: 32.54 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 5.50 Total: 4.64 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -6.65 Total: -124.17 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -2.04 Total: -43.27 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.90 Total: 47.27 kcal Total: -80.05 -2.95 -83.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753936486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.269 kcal (2) G-P(sol) polarization free energy of solvation -80.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds