Wall clock time and date at job start Tue Mar 31 2020 18:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 120.00255 * 2 1 4 4 H 1.48502 * 109.47092 * 239.99999 * 3 2 1 5 5 H 1.48506 * 109.46760 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47289 * 119.99878 * 3 2 1 7 7 C 1.38957 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00188 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99747 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00013 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99961 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99908 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46870 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99757 * 177.90340 * 13 12 10 15 15 C 1.52999 * 115.54939 * 294.31168 * 14 13 12 16 16 N 1.46498 * 109.47215 * 272.74632 * 15 14 13 17 17 C 1.34776 * 120.00047 * 174.95617 * 16 15 14 18 18 O 1.21285 * 120.00171 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00375 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.47488 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47283 * 179.97438 * 20 19 17 22 22 C 1.34514 * 125.79101 * 89.71486 * 21 20 19 23 23 C 1.41383 * 106.84388 * 179.89063 * 22 21 20 24 24 C 1.34521 * 106.83603 * 0.37427 * 23 22 21 25 25 O 1.34300 * 108.42157 * 359.77147 * 24 23 22 26 26 C 1.53000 * 117.49783 * 79.98586 * 14 13 12 27 27 C 1.52998 * 117.49577 * 148.64718 * 14 13 12 28 28 H 0.96994 * 120.00061 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00061 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47082 * 60.00504 * 12 10 9 31 31 H 1.08997 * 109.46864 * 299.99846 * 12 10 9 32 32 H 1.00900 * 111.00310 * 301.86397 * 13 12 10 33 33 H 1.08997 * 109.47222 * 152.74681 * 15 14 13 34 34 H 1.08996 * 109.47472 * 32.74892 * 15 14 13 35 35 H 0.97003 * 120.00036 * 354.95773 * 16 15 14 36 36 H 1.09003 * 109.46906 * 59.99405 * 19 17 16 37 37 H 1.08996 * 109.46813 * 299.99864 * 19 17 16 38 38 H 1.09004 * 109.47242 * 300.00167 * 20 19 17 39 39 H 1.09006 * 109.46888 * 59.99721 * 20 19 17 40 40 H 1.07998 * 126.57935 * 0.02562 * 22 21 20 41 41 H 1.07997 * 126.58210 * 180.16379 * 23 22 21 42 42 H 1.07999 * 125.78674 * 179.75384 * 24 23 22 43 43 H 1.09003 * 117.49653 * 215.00021 * 26 14 13 44 44 H 1.08996 * 117.50249 * 0.02562 * 26 14 13 45 45 H 1.09000 * 117.50127 * 359.96798 * 27 14 13 46 46 H 1.09000 * 117.50036 * 144.97962 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1983 -5.9796 0.0004 14 6 1.4987 -7.2703 0.0511 15 6 0.7210 -7.5491 1.3388 16 7 1.6127 -8.1655 2.3242 17 6 1.1710 -8.4079 3.5742 18 8 0.0354 -8.1153 3.8835 19 6 2.0885 -9.0415 4.5881 20 6 1.3463 -9.2047 5.9160 21 6 2.2636 -9.8388 6.9296 22 6 3.0860 -9.1810 7.7664 23 6 3.7535 -10.1596 8.5381 24 6 3.3052 -11.3573 8.1210 25 8 2.4029 -11.1568 7.1466 26 6 0.9167 -7.8102 -1.2568 27 6 2.1607 -8.4604 -0.6461 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6167 -4.9209 -0.8887 31 1 0.6174 -4.9205 0.8914 32 1 2.8107 -5.9313 -0.8001 33 1 -0.1064 -8.2255 1.1243 34 1 0.3307 -6.6128 1.7376 35 1 2.5211 -8.3993 2.0769 36 1 2.9613 -8.4054 4.7358 37 1 2.4083 -10.0191 4.2277 38 1 1.0267 -8.2268 6.2762 39 1 0.4733 -9.8406 5.7684 40 1 3.2107 -8.1106 7.8369 41 1 4.4856 -9.9802 9.3115 42 1 3.6179 -12.3173 8.5044 43 1 -0.0204 -8.3641 -1.1999 44 1 1.0532 -7.2080 -2.1550 45 1 3.1150 -8.2856 -1.1429 46 1 2.0423 -9.4421 -0.1874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754507939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:18 Heat of formation + Delta-G solvation = -35.622391 kcal Electronic energy + Delta-G solvation = -27508.677107 eV Core-core repulsion = 23400.678670 eV Total energy + Delta-G solvation = -4107.998437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.80953 -40.02220 -38.83346 -37.78882 -34.42287 -34.20710 -33.96849 -33.03483 -32.62866 -31.19315 -29.46752 -27.27178 -26.55274 -24.37372 -24.08937 -22.61983 -22.00211 -20.69566 -20.34283 -19.73001 -19.24666 -17.90209 -17.80803 -17.08143 -16.51097 -16.29705 -16.02676 -15.88236 -15.33060 -15.22383 -14.65583 -14.50888 -14.15779 -14.06042 -13.81759 -13.56650 -13.26583 -13.07637 -12.93243 -12.80668 -12.53542 -12.45720 -12.30984 -12.14766 -11.74033 -11.64600 -11.48773 -11.35576 -11.08649 -10.87145 -10.44981 -10.38580 -10.21593 -10.18189 -9.94295 -9.50924 -9.12181 -8.71623 -8.46296 -8.10032 -7.97162 -6.42125 -3.83234 1.45281 2.35402 2.54655 2.69027 3.02905 3.19671 3.25612 3.29701 3.61181 3.88290 4.03927 4.24317 4.34932 4.44747 4.59633 4.61546 4.69803 4.77026 4.79389 4.86827 4.98109 5.09970 5.24095 5.24443 5.42209 5.44339 5.52138 5.52636 5.57011 5.67026 5.68794 5.73224 5.74692 5.83656 5.89624 5.91700 5.96988 6.24320 6.25035 6.33947 6.88430 7.09659 7.40641 7.52329 7.54384 8.04724 8.12722 8.59879 9.16685 9.52959 10.04051 10.75387 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.002108 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.402579 B =13278.016808 C =14959.958580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.301 4.301 8 H 0.102 0.898 9 N -0.562 5.562 10 C 0.440 3.560 11 O -0.585 6.585 12 C 0.050 3.950 13 N -0.626 5.626 14 C 0.038 3.962 15 C 0.165 3.835 16 N -0.717 5.717 17 C 0.514 3.486 18 O -0.544 6.544 19 C -0.137 4.137 20 C -0.024 4.024 21 C -0.009 4.009 22 C -0.209 4.209 23 C -0.213 4.213 24 C -0.047 4.047 25 O -0.177 6.177 26 C -0.206 4.206 27 C -0.167 4.167 28 H 0.272 0.728 29 H 0.393 0.607 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.354 0.646 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.404 0.596 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.201 0.799 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 -23.546 8.384 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.226 3.774 11 O -0.469 6.469 12 C -0.082 4.082 13 N -0.257 5.257 14 C -0.055 4.055 15 C 0.042 3.958 16 N -0.369 5.369 17 C 0.300 3.700 18 O -0.422 6.422 19 C -0.177 4.177 20 C -0.062 4.062 21 C -0.059 4.059 22 C -0.228 4.228 23 C -0.232 4.232 24 C -0.115 4.115 25 O -0.073 6.073 26 C -0.247 4.247 27 C -0.205 4.205 28 H 0.082 0.918 29 H 0.226 0.774 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.239 0.761 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.218 0.782 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.323 -23.305 9.126 25.136 hybrid contribution 0.165 0.836 -0.896 1.236 sum 2.488 -22.469 8.230 24.058 Atomic orbital electron populations 1.69604 1.05927 1.28317 1.50302 1.25277 0.95650 0.99754 0.97258 0.85910 0.78759 0.80430 0.79066 1.19927 1.20960 1.19861 1.19647 0.93326 0.82208 1.47837 0.87972 1.41847 1.09233 1.04572 1.64146 1.19751 0.88349 0.84658 0.84685 1.90523 1.13711 1.87072 1.55595 1.21689 0.94396 0.90554 1.01564 1.59845 1.18636 0.98085 1.49159 1.21871 1.00470 0.90935 0.92220 1.20726 0.90848 0.98702 0.85574 1.45902 1.16986 1.62816 1.11165 1.20519 0.88228 0.78594 0.82677 1.90727 1.19861 1.52455 1.79108 1.21656 0.99356 1.02894 0.93823 1.19846 0.95277 1.01330 0.89712 1.22477 1.01753 0.80509 1.01176 1.21682 1.00583 1.00953 0.99627 1.21866 1.04765 0.92452 1.04100 1.24020 0.94395 1.00395 0.92641 1.84019 1.50418 1.26293 1.46581 1.23664 0.97981 1.04982 0.98064 1.23153 0.97569 0.96484 1.03297 0.91775 0.77416 0.93463 0.89419 0.82588 0.91094 0.90082 0.76091 0.88096 0.88565 0.87820 0.89248 0.83297 0.83496 0.78211 0.88401 0.88410 0.88137 0.88151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.58 13.05 55.50 0.72 -23.86 16 2 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 10 C 0.44 10.32 7.82 -10.98 -0.09 10.23 16 11 O -0.58 -15.71 15.83 5.54 0.09 -15.62 16 12 C 0.05 0.87 6.03 -4.97 -0.03 0.84 16 13 N -0.63 -9.52 6.26 -101.21 -0.63 -10.15 16 14 C 0.04 0.44 1.90 -131.60 -0.25 0.19 16 15 C 0.17 1.95 5.75 -4.04 -0.02 1.92 16 16 N -0.72 -7.52 5.47 -60.30 -0.33 -7.85 16 17 C 0.51 5.89 7.83 -10.98 -0.09 5.81 16 18 O -0.54 -8.31 15.98 5.55 0.09 -8.22 16 19 C -0.14 -1.14 5.68 -27.88 -0.16 -1.30 16 20 C -0.02 -0.22 5.04 -27.89 -0.14 -0.36 16 21 C -0.01 -0.09 6.57 -35.63 -0.23 -0.32 16 22 C -0.21 -1.95 10.81 -39.70 -0.43 -2.38 16 23 C -0.21 -1.75 10.91 -39.70 -0.43 -2.19 16 24 C -0.05 -0.36 12.09 29.42 0.36 0.00 16 25 O -0.18 -1.74 10.65 5.72 0.06 -1.68 16 26 C -0.21 -2.00 10.07 -26.69 -0.27 -2.27 16 27 C -0.17 -1.48 9.56 -26.69 -0.26 -1.74 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.47 6.55 -51.93 -0.34 1.13 16 32 H 0.35 5.50 8.39 -39.29 -0.33 5.17 16 33 H 0.07 0.78 7.89 -51.93 -0.41 0.37 16 34 H 0.08 1.15 6.46 -51.93 -0.34 0.82 16 35 H 0.40 3.49 8.17 -40.82 -0.33 3.15 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.09 0.85 8.10 -51.93 -0.42 0.42 16 40 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.20 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.10 0.85 8.04 -51.93 -0.42 0.43 16 44 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 396.71 15.07 5.98 5.98 Total: -1.00 -34.12 396.71 -8.03 -42.15 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -6.64 Total: 17.09 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.28 Total: 0.39 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.30 Total: -56.17 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: 0.24 Total: -25.51 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.12 -8.03 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754507939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.529 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds