Wall clock time and date at job start Tue Mar 31 2020 18:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 120.00255 * 2 1 4 4 H 1.48502 * 109.47092 * 239.99999 * 3 2 1 5 5 H 1.48506 * 109.46760 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47289 * 119.99878 * 3 2 1 7 7 C 1.38957 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00188 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99747 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00013 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99961 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99908 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46870 * 179.97438 * 12 10 9 14 14 C 1.46899 * 110.99757 * 177.90340 * 13 12 10 15 15 C 1.52999 * 115.54939 * 294.31168 * 14 13 12 16 16 N 1.46498 * 109.47215 * 272.74632 * 15 14 13 17 17 C 1.34776 * 120.00047 * 174.95617 * 16 15 14 18 18 O 1.21285 * 120.00171 * 359.97438 * 17 16 15 19 19 C 1.50703 * 120.00375 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.47488 * 179.97438 * 19 17 16 21 21 C 1.50695 * 109.47283 * 179.97438 * 20 19 17 22 22 C 1.34514 * 125.79101 * 89.71486 * 21 20 19 23 23 C 1.41383 * 106.84388 * 179.89063 * 22 21 20 24 24 C 1.34521 * 106.83603 * 0.37427 * 23 22 21 25 25 O 1.34300 * 108.42157 * 359.77147 * 24 23 22 26 26 C 1.53000 * 117.49783 * 79.98586 * 14 13 12 27 27 C 1.52998 * 117.49577 * 148.64718 * 14 13 12 28 28 H 0.96994 * 120.00061 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00061 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47082 * 60.00504 * 12 10 9 31 31 H 1.08997 * 109.46864 * 299.99846 * 12 10 9 32 32 H 1.00900 * 111.00310 * 301.86397 * 13 12 10 33 33 H 1.08997 * 109.47222 * 152.74681 * 15 14 13 34 34 H 1.08996 * 109.47472 * 32.74892 * 15 14 13 35 35 H 0.97003 * 120.00036 * 354.95773 * 16 15 14 36 36 H 1.09003 * 109.46906 * 59.99405 * 19 17 16 37 37 H 1.08996 * 109.46813 * 299.99864 * 19 17 16 38 38 H 1.09004 * 109.47242 * 300.00167 * 20 19 17 39 39 H 1.09006 * 109.46888 * 59.99721 * 20 19 17 40 40 H 1.07998 * 126.57935 * 0.02562 * 22 21 20 41 41 H 1.07997 * 126.58210 * 180.16379 * 23 22 21 42 42 H 1.07999 * 125.78674 * 179.75384 * 24 23 22 43 43 H 1.09003 * 117.49653 * 215.00021 * 26 14 13 44 44 H 1.08996 * 117.50249 * 0.02562 * 26 14 13 45 45 H 1.09000 * 117.50127 * 359.96798 * 27 14 13 46 46 H 1.09000 * 117.50036 * 144.97962 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1020 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1983 -5.9796 0.0004 14 6 1.4987 -7.2703 0.0511 15 6 0.7210 -7.5491 1.3388 16 7 1.6127 -8.1655 2.3242 17 6 1.1710 -8.4079 3.5742 18 8 0.0354 -8.1153 3.8835 19 6 2.0885 -9.0415 4.5881 20 6 1.3463 -9.2047 5.9160 21 6 2.2636 -9.8388 6.9296 22 6 3.0860 -9.1810 7.7664 23 6 3.7535 -10.1596 8.5381 24 6 3.3052 -11.3573 8.1210 25 8 2.4029 -11.1568 7.1466 26 6 0.9167 -7.8102 -1.2568 27 6 2.1607 -8.4604 -0.6461 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6167 -4.9209 -0.8887 31 1 0.6174 -4.9205 0.8914 32 1 2.8107 -5.9313 -0.8001 33 1 -0.1064 -8.2255 1.1243 34 1 0.3307 -6.6128 1.7376 35 1 2.5211 -8.3993 2.0769 36 1 2.9613 -8.4054 4.7358 37 1 2.4083 -10.0191 4.2277 38 1 1.0267 -8.2268 6.2762 39 1 0.4733 -9.8406 5.7684 40 1 3.2107 -8.1106 7.8369 41 1 4.4856 -9.9802 9.3115 42 1 3.6179 -12.3173 8.5044 43 1 -0.0204 -8.3641 -1.1999 44 1 1.0532 -7.2080 -2.1550 45 1 3.1150 -8.2856 -1.1429 46 1 2.0423 -9.4421 -0.1874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754507939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:17 Heat of formation + Delta-G solvation = -61.164886 kcal Electronic energy + Delta-G solvation = -27509.784713 eV Core-core repulsion = 23400.678670 eV Total energy + Delta-G solvation = -4109.106043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.46144 -40.98249 -40.24119 -39.21025 -36.03648 -35.23606 -35.03367 -33.92121 -33.68435 -33.20713 -30.18871 -28.31993 -28.00815 -25.88973 -25.11109 -23.39599 -22.64540 -21.45224 -21.19569 -21.08562 -20.62777 -19.92127 -18.55122 -18.03818 -17.67948 -17.16168 -17.05922 -16.88184 -16.60924 -16.37524 -16.19679 -15.81605 -15.50913 -15.32063 -14.86964 -14.59635 -14.41226 -14.13397 -13.77204 -13.71831 -13.55421 -13.50533 -13.46320 -13.25192 -12.99422 -12.94564 -12.84064 -12.44803 -12.40677 -12.13595 -12.06078 -11.87070 -11.51268 -11.25214 -10.93946 -10.81525 -10.34062 -10.05676 -10.03563 -9.36724 -9.26831 -8.47743 -5.97019 0.80380 1.38900 1.40795 1.52033 1.64797 1.71215 2.01286 2.02341 2.24646 2.28525 2.65193 3.04202 3.19171 3.43319 3.60335 3.64534 3.78314 3.90001 4.00319 4.06034 4.17461 4.18662 4.26274 4.35140 4.43155 4.50599 4.56477 4.59855 4.71023 4.76495 4.77068 4.82936 4.96613 4.99734 5.00046 5.09350 5.21560 5.26993 5.39162 5.45327 5.63225 5.84255 6.05069 6.23671 6.33552 6.57329 6.58304 7.10314 7.26354 7.53600 8.08209 8.69360 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.002108 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.402579 B =13278.016808 C =14959.958580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.015 4.015 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.438 3.562 11 O -0.621 6.621 12 C 0.067 3.933 13 N -0.638 5.638 14 C 0.021 3.979 15 C 0.168 3.832 16 N -0.709 5.709 17 C 0.511 3.489 18 O -0.587 6.587 19 C -0.126 4.126 20 C -0.020 4.020 21 C -0.024 4.024 22 C -0.222 4.222 23 C -0.229 4.229 24 C -0.043 4.043 25 O -0.191 6.191 26 C -0.199 4.199 27 C -0.144 4.144 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.351 0.649 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.415 0.585 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.237 0.763 43 H 0.112 0.888 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 -25.169 8.304 26.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.226 3.774 11 O -0.508 6.508 12 C -0.065 4.065 13 N -0.269 5.269 14 C -0.072 4.072 15 C 0.044 3.956 16 N -0.360 5.360 17 C 0.299 3.701 18 O -0.468 6.468 19 C -0.166 4.166 20 C -0.057 4.057 21 C -0.073 4.073 22 C -0.241 4.241 23 C -0.248 4.248 24 C -0.109 4.109 25 O -0.088 6.088 26 C -0.239 4.239 27 C -0.182 4.182 28 H 0.087 0.913 29 H 0.229 0.771 30 H 0.086 0.914 31 H 0.112 0.888 32 H 0.171 0.829 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.252 0.748 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.171 0.829 41 H 0.183 0.817 42 H 0.253 0.747 43 H 0.130 0.870 44 H 0.112 0.888 45 H 0.123 0.877 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.989 -24.957 9.030 26.708 hybrid contribution -0.020 1.254 -0.848 1.514 sum 2.969 -23.703 8.183 25.251 Atomic orbital electron populations 1.69672 1.06879 1.29409 1.50124 1.26087 0.96576 1.02544 0.96230 0.84969 0.77741 0.76506 0.79002 1.19497 1.19527 1.19741 1.19639 0.92731 0.83954 1.50095 0.90170 1.41936 1.09322 1.04783 1.64926 1.20797 0.88247 0.86049 0.82350 1.90486 1.15642 1.87947 1.56690 1.21461 0.94114 0.88154 1.02736 1.59786 1.18778 0.99020 1.49316 1.21800 1.02305 0.90121 0.92934 1.20629 0.91447 0.97696 0.85840 1.45874 1.17352 1.62027 1.10788 1.21049 0.87985 0.77932 0.83178 1.90708 1.21860 1.54367 1.79849 1.21621 0.98608 1.03921 0.92427 1.19739 0.95181 1.00654 0.90173 1.22476 1.02334 0.80739 1.01792 1.21933 1.00775 1.01567 0.99856 1.22178 1.05436 0.92447 1.04727 1.24780 0.92988 1.01801 0.91358 1.84013 1.51149 1.26241 1.47382 1.23704 0.99180 1.04578 0.96447 1.23268 0.97371 0.96045 1.01469 0.91273 0.77078 0.91448 0.88809 0.82911 0.90028 0.93005 0.74810 0.87018 0.86301 0.88850 0.89959 0.82938 0.81745 0.74679 0.86952 0.88777 0.87729 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.30 13.05 21.67 0.28 -50.02 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.33 -19.18 9.68 84.04 0.81 -18.36 16 8 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 9 N -0.57 -29.81 5.29 -306.98 -1.62 -31.43 16 10 C 0.44 20.96 7.82 87.66 0.69 21.65 16 11 O -0.62 -34.21 15.83 -3.08 -0.05 -34.26 16 12 C 0.07 2.33 6.03 85.56 0.52 2.85 16 13 N -0.64 -18.97 6.26 -474.13 -2.97 -21.93 16 14 C 0.02 0.44 1.90 3.53 0.01 0.45 16 15 C 0.17 3.80 5.75 86.38 0.50 4.29 16 16 N -0.71 -14.02 5.47 -463.07 -2.53 -16.55 16 17 C 0.51 11.48 7.83 87.66 0.69 12.16 16 18 O -0.59 -18.24 15.98 -3.04 -0.05 -18.29 16 19 C -0.13 -1.98 5.68 29.85 0.17 -1.81 16 20 C -0.02 -0.36 5.04 29.84 0.15 -0.21 16 21 C -0.02 -0.44 6.57 24.83 0.16 -0.28 16 22 C -0.22 -4.03 10.81 22.19 0.24 -3.79 16 23 C -0.23 -3.44 10.91 22.19 0.24 -3.20 16 24 C -0.04 -0.57 12.09 66.97 0.81 0.24 16 25 O -0.19 -3.53 10.65 -2.46 -0.03 -3.56 16 26 C -0.20 -3.36 10.07 30.62 0.31 -3.05 16 27 C -0.14 -2.12 9.56 30.62 0.29 -1.83 16 28 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.40 19.72 7.90 -92.71 -0.73 18.99 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 3.17 6.55 -2.39 -0.02 3.15 16 32 H 0.35 10.69 8.39 -89.69 -0.75 9.94 16 33 H 0.08 1.67 7.89 -2.39 -0.02 1.65 16 34 H 0.05 1.49 6.46 -2.39 -0.02 1.47 16 35 H 0.42 6.34 8.17 -92.71 -0.76 5.58 16 36 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.86 8.10 -2.38 -0.02 1.84 16 39 H 0.08 1.59 8.10 -2.38 -0.02 1.57 16 40 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.24 1.09 8.06 -2.91 -0.02 1.06 16 43 H 0.11 1.60 8.04 -2.39 -0.02 1.58 16 44 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -75.35 396.71 -0.09 -75.44 By element: Atomic # 1 Polarization: 47.74 SS G_CDS: -1.21 Total: 46.54 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 6.05 Total: 8.79 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -6.84 Total: -119.93 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -0.12 Total: -56.10 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -75.35 -0.09 -75.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754507939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.278 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds