Wall clock time and date at job start Tue Mar 31 2020 19:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00571 * 2 1 4 4 H 1.48499 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46841 * 300.00101 * 3 2 1 6 6 H 1.48499 * 109.47038 * 59.99704 * 3 2 1 7 7 C 1.38817 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00393 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00222 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47195 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46895 * 295.00110 * 11 10 9 13 13 N 1.46502 * 109.47242 * 55.00190 * 11 10 9 14 14 C 1.34780 * 119.99570 * 235.27652 * 13 11 10 15 15 O 1.21601 * 120.00111 * 5.03204 * 14 13 11 16 16 C 1.47489 * 119.99841 * 185.02899 * 14 13 11 17 17 C 1.37817 * 126.77227 * 359.69101 * 16 14 13 18 18 O 1.33495 * 108.33820 * 179.86331 * 17 16 14 19 19 C 1.34878 * 109.89141 * 0.40984 * 18 17 16 20 20 C 1.46782 * 125.65633 * 179.76976 * 19 18 17 21 21 N 1.34779 * 119.99629 * 359.97208 * 20 19 18 22 22 O 1.21673 * 119.99966 * 179.97438 * 20 19 18 23 23 C 1.36059 * 108.69185 * 359.74274 * 19 18 17 24 24 C 1.52999 * 109.46878 * 174.99775 * 11 10 9 25 25 C 1.54259 * 110.03484 * 295.38985 * 24 11 10 26 26 C 1.54891 * 104.19775 * 217.10543 * 25 24 11 27 27 C 1.54891 * 102.74614 * 37.94048 * 26 25 24 28 28 C 1.53881 * 110.03143 * 178.22282 * 24 11 10 29 29 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99714 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47184 * 59.99736 * 10 9 7 32 32 H 1.09002 * 109.46958 * 299.99758 * 10 9 7 33 33 H 0.96990 * 120.00102 * 55.27238 * 13 11 10 34 34 H 1.08000 * 125.82677 * 359.97438 * 17 16 14 35 35 H 0.96999 * 120.00070 * 359.97438 * 21 20 19 36 36 H 0.97001 * 119.99385 * 180.02562 * 21 20 19 37 37 H 1.08005 * 126.68626 * 179.97438 * 23 19 18 38 38 H 1.09003 * 110.01648 * 56.83467 * 24 11 10 39 39 H 1.08994 * 110.48766 * 335.78410 * 25 24 11 40 40 H 1.09001 * 110.48440 * 98.43027 * 25 24 11 41 41 H 1.09003 * 110.75229 * 279.63143 * 26 25 24 42 42 H 1.08997 * 110.91668 * 156.33592 * 26 25 24 43 43 H 1.09002 * 110.48319 * 203.37494 * 27 26 25 44 44 H 1.09002 * 110.59157 * 80.79670 * 27 26 25 45 45 H 1.09005 * 110.03178 * 238.57375 * 28 24 11 46 46 H 1.09001 * 110.02707 * 0.02562 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8197 -0.0001 12 1 0.4970 -4.8138 0.9310 13 7 0.1445 -4.6758 -1.1319 14 6 -1.1866 -4.6581 -0.9210 15 8 -1.6225 -4.6693 0.2142 16 6 -2.1144 -4.6251 -2.0670 17 6 -1.7754 -4.6031 -3.4026 18 8 -2.9002 -4.5791 -4.1211 19 6 -3.9697 -4.5755 -3.2993 20 6 -5.3746 -4.5467 -3.7235 21 7 -5.6820 -4.5204 -5.0355 22 8 -6.2617 -4.5466 -2.8907 23 6 -3.5305 -4.6035 -2.0119 24 6 1.8244 -6.1412 -0.1259 25 6 2.5385 -6.2119 -1.4914 26 6 2.4125 -7.6980 -1.9095 27 6 0.9893 -8.0701 -1.4243 28 6 0.8394 -7.3227 -0.0832 29 1 -0.4849 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0002 31 1 2.6845 -3.7147 0.8904 32 1 2.6845 -3.7147 -0.8895 33 1 0.4939 -4.5932 -2.0329 34 1 -0.7712 -4.6067 -3.8001 35 1 -4.9747 -4.5201 -5.6994 36 1 -6.6104 -4.5010 -5.3158 37 1 -4.1417 -4.6079 -1.1215 38 1 2.5511 -6.2316 0.6815 39 1 2.0403 -5.5682 -2.2163 40 1 3.5869 -5.9322 -1.3885 41 1 3.1637 -8.3061 -1.4053 42 1 2.4925 -7.8061 -2.9911 43 1 0.9073 -9.1463 -1.2725 44 1 0.2395 -7.7281 -2.1376 45 1 1.0886 -7.9869 0.7444 46 1 -0.1807 -6.9545 0.0267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754651706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:19 Heat of formation + Delta-G solvation = -59.222438 kcal Electronic energy + Delta-G solvation = -29545.368824 eV Core-core repulsion = 25436.347012 eV Total energy + Delta-G solvation = -4109.021812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.91053 -39.90646 -39.35457 -37.89629 -35.23498 -34.12120 -33.52322 -33.13228 -31.37667 -30.18740 -29.41610 -28.70994 -26.29379 -24.11580 -23.89968 -22.98921 -21.53295 -21.04718 -20.50473 -19.85465 -19.23984 -18.80652 -17.32744 -17.15009 -16.62308 -16.55233 -16.11040 -15.81641 -15.70667 -14.76628 -14.63011 -14.54095 -14.44400 -14.14396 -13.60891 -13.37653 -13.25218 -13.23439 -13.19005 -12.79395 -12.66499 -12.08278 -11.70307 -11.18976 -11.07881 -11.03269 -10.84206 -10.71092 -10.68337 -10.62754 -10.48666 -10.32419 -10.10593 -10.05379 -10.00664 -9.71232 -9.70946 -8.91607 -8.87437 -8.62177 -6.89907 -5.72966 -3.02824 0.81849 1.61289 2.39290 2.92935 3.15792 3.43327 3.47866 3.49089 3.51652 3.62119 4.42325 4.52894 4.54985 4.62774 4.67013 4.76989 4.87136 5.22967 5.36084 5.40273 5.47450 5.48590 5.58054 5.60763 5.62660 5.65647 5.71263 5.83460 5.90265 5.94071 6.04808 6.08935 6.13450 6.24149 6.29591 6.31908 6.33647 6.46177 6.50149 6.51697 6.69408 6.95630 7.00279 7.70937 7.80056 7.85202 8.44403 8.54109 9.56044 10.14557 10.49418 11.48988 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007403 B = 0.004369 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3781.162871 B = 6407.118821 C = 9284.598171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.138 3.862 12 H 0.102 0.898 13 N -0.701 5.701 14 C 0.590 3.410 15 O -0.530 6.530 16 C -0.224 4.224 17 C 0.047 3.953 18 O -0.156 6.156 19 C -0.100 4.100 20 C 0.614 3.386 21 N -0.845 5.845 22 O -0.520 6.520 23 C -0.055 4.055 24 C -0.099 4.099 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.120 4.120 29 H 0.254 0.746 30 H 0.387 0.613 31 H 0.028 0.972 32 H 0.023 0.977 33 H 0.394 0.606 34 H 0.220 0.780 35 H 0.407 0.593 36 H 0.409 0.591 37 H 0.171 0.829 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -17.231 -12.597 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.015 3.985 11 C 0.034 3.966 12 H 0.120 0.880 13 N -0.352 5.352 14 C 0.376 3.624 15 O -0.407 6.407 16 C -0.229 4.229 17 C -0.026 4.026 18 O -0.050 6.050 19 C -0.151 4.151 20 C 0.399 3.601 21 N -0.409 5.409 22 O -0.397 6.397 23 C -0.076 4.076 24 C -0.119 4.119 25 C -0.154 4.154 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.157 4.157 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.229 0.771 34 H 0.236 0.764 35 H 0.236 0.764 36 H 0.240 0.760 37 H 0.188 0.812 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.464 -17.127 -11.407 20.725 hybrid contribution 0.492 1.202 -0.764 1.507 sum -1.972 -15.925 -12.172 20.141 Atomic orbital electron populations 1.69697 1.05058 1.25458 1.57373 1.24751 0.95449 0.97619 1.03009 0.86159 0.78737 0.84344 0.77178 1.20598 1.21975 1.21875 1.19240 0.90936 0.84164 1.42967 0.91234 1.42332 1.06080 0.99621 1.89356 1.21009 0.93170 0.85853 0.98491 1.21380 0.90817 0.93835 0.90607 0.87988 1.45609 1.05006 1.73930 1.10670 1.17090 0.81842 0.76051 0.87384 1.90808 1.77187 1.49736 1.22946 1.20820 0.94775 1.13428 0.93844 1.25067 0.89927 0.97884 0.89712 1.83860 1.13922 1.70023 1.37177 1.21710 0.86925 1.17110 0.89337 1.16476 0.84773 0.75834 0.83036 1.43661 1.12712 1.77528 1.06973 1.90948 1.46238 1.50368 1.52142 1.21918 0.93364 0.95217 0.97071 1.22122 0.97125 0.94294 0.98315 1.22394 1.00457 0.96017 0.96537 1.22495 0.96915 0.96559 1.00191 1.22316 0.96915 0.99413 0.97211 1.22169 1.00076 0.96340 0.97140 0.93577 0.77883 0.95413 0.95950 0.77103 0.76412 0.76429 0.75983 0.81193 0.89923 0.91698 0.91416 0.91762 0.91982 0.92298 0.92032 0.92177 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.90 22.52 29.55 -169.99 -5.02 17.49 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.31 5.43 -59.91 -0.33 -18.63 16 10 C 0.14 2.73 5.85 -4.04 -0.02 2.70 16 11 C 0.14 2.18 2.03 -67.93 -0.14 2.04 16 12 H 0.10 1.91 6.91 -51.93 -0.36 1.55 16 13 N -0.70 -10.33 3.65 -54.86 -0.20 -10.53 16 14 C 0.59 10.08 6.99 -12.49 -0.09 9.99 16 15 O -0.53 -11.24 16.25 5.28 0.09 -11.16 16 16 C -0.22 -3.25 6.16 -104.95 -0.65 -3.90 16 17 C 0.05 0.50 11.64 30.58 0.36 0.85 16 18 O -0.16 -1.66 10.32 6.21 0.06 -1.59 16 19 C -0.10 -1.27 7.09 -36.91 -0.26 -1.54 16 20 C 0.61 7.49 8.06 -12.81 -0.10 7.39 16 21 N -0.85 -6.23 8.87 30.29 0.27 -5.96 16 22 O -0.52 -8.26 17.68 5.21 0.09 -8.17 16 23 C -0.05 -0.82 10.41 -39.03 -0.41 -1.22 16 24 C -0.10 -1.18 2.80 -89.50 -0.25 -1.43 16 25 C -0.12 -1.18 5.18 -25.07 -0.13 -1.31 16 26 C -0.12 -1.08 6.91 -24.74 -0.17 -1.25 16 27 C -0.12 -1.15 6.83 -25.08 -0.17 -1.32 16 28 C -0.12 -1.37 6.21 -25.61 -0.16 -1.53 16 29 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.39 10.62 7.31 -40.82 -0.30 10.32 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.02 0.41 7.24 -51.93 -0.38 0.03 16 33 H 0.39 4.82 6.11 -40.82 -0.25 4.57 16 34 H 0.22 1.41 7.47 -52.49 -0.39 1.01 16 35 H 0.41 2.06 8.57 -40.82 -0.35 1.71 16 36 H 0.41 2.26 8.93 -40.82 -0.36 1.89 16 37 H 0.17 2.67 8.06 -52.48 -0.42 2.25 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.65 6.04 -51.93 -0.31 0.34 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 0.94 6.70 -51.93 -0.35 0.59 16 LS Contribution 382.43 15.07 5.76 5.76 Total: -1.00 -36.78 382.43 -7.39 -44.17 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -6.40 Total: 14.41 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.44 Total: 2.15 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.47 Total: -63.07 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.24 Total: -20.92 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.78 -7.39 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754651706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.051 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds