Wall clock time and date at job start Tue Mar 31 2020 19:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00571 * 2 1 4 4 H 1.48499 * 109.47106 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46841 * 300.00101 * 3 2 1 6 6 H 1.48499 * 109.47038 * 59.99704 * 3 2 1 7 7 C 1.38817 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00393 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00222 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47195 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46895 * 295.00110 * 11 10 9 13 13 N 1.46502 * 109.47242 * 55.00190 * 11 10 9 14 14 C 1.34780 * 119.99570 * 235.27652 * 13 11 10 15 15 O 1.21601 * 120.00111 * 5.03204 * 14 13 11 16 16 C 1.47489 * 119.99841 * 185.02899 * 14 13 11 17 17 C 1.37817 * 126.77227 * 359.69101 * 16 14 13 18 18 O 1.33495 * 108.33820 * 179.86331 * 17 16 14 19 19 C 1.34878 * 109.89141 * 0.40984 * 18 17 16 20 20 C 1.46782 * 125.65633 * 179.76976 * 19 18 17 21 21 N 1.34779 * 119.99629 * 359.97208 * 20 19 18 22 22 O 1.21673 * 119.99966 * 179.97438 * 20 19 18 23 23 C 1.36059 * 108.69185 * 359.74274 * 19 18 17 24 24 C 1.52999 * 109.46878 * 174.99775 * 11 10 9 25 25 C 1.54259 * 110.03484 * 295.38985 * 24 11 10 26 26 C 1.54891 * 104.19775 * 217.10543 * 25 24 11 27 27 C 1.54891 * 102.74614 * 37.94048 * 26 25 24 28 28 C 1.53881 * 110.03143 * 178.22282 * 24 11 10 29 29 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99714 * 0.02562 * 9 7 2 31 31 H 1.08994 * 109.47184 * 59.99736 * 10 9 7 32 32 H 1.09002 * 109.46958 * 299.99758 * 10 9 7 33 33 H 0.96990 * 120.00102 * 55.27238 * 13 11 10 34 34 H 1.08000 * 125.82677 * 359.97438 * 17 16 14 35 35 H 0.96999 * 120.00070 * 359.97438 * 21 20 19 36 36 H 0.97001 * 119.99385 * 180.02562 * 21 20 19 37 37 H 1.08005 * 126.68626 * 179.97438 * 23 19 18 38 38 H 1.09003 * 110.01648 * 56.83467 * 24 11 10 39 39 H 1.08994 * 110.48766 * 335.78410 * 25 24 11 40 40 H 1.09001 * 110.48440 * 98.43027 * 25 24 11 41 41 H 1.09003 * 110.75229 * 279.63143 * 26 25 24 42 42 H 1.08997 * 110.91668 * 156.33592 * 26 25 24 43 43 H 1.09002 * 110.48319 * 203.37494 * 27 26 25 44 44 H 1.09002 * 110.59157 * 80.79670 * 27 26 25 45 45 H 1.09005 * 110.03178 * 238.57375 * 28 24 11 46 46 H 1.09001 * 110.02707 * 0.02562 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3461 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 6 1.0635 -4.8197 -0.0001 12 1 0.4970 -4.8138 0.9310 13 7 0.1445 -4.6758 -1.1319 14 6 -1.1866 -4.6581 -0.9210 15 8 -1.6225 -4.6693 0.2142 16 6 -2.1144 -4.6251 -2.0670 17 6 -1.7754 -4.6031 -3.4026 18 8 -2.9002 -4.5791 -4.1211 19 6 -3.9697 -4.5755 -3.2993 20 6 -5.3746 -4.5467 -3.7235 21 7 -5.6820 -4.5204 -5.0355 22 8 -6.2617 -4.5466 -2.8907 23 6 -3.5305 -4.6035 -2.0119 24 6 1.8244 -6.1412 -0.1259 25 6 2.5385 -6.2119 -1.4914 26 6 2.4125 -7.6980 -1.9095 27 6 0.9893 -8.0701 -1.4243 28 6 0.8394 -7.3227 -0.0832 29 1 -0.4849 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0002 31 1 2.6845 -3.7147 0.8904 32 1 2.6845 -3.7147 -0.8895 33 1 0.4939 -4.5932 -2.0329 34 1 -0.7712 -4.6067 -3.8001 35 1 -4.9747 -4.5201 -5.6994 36 1 -6.6104 -4.5010 -5.3158 37 1 -4.1417 -4.6079 -1.1215 38 1 2.5511 -6.2316 0.6815 39 1 2.0403 -5.5682 -2.2163 40 1 3.5869 -5.9322 -1.3885 41 1 3.1637 -8.3061 -1.4053 42 1 2.4925 -7.8061 -2.9911 43 1 0.9073 -9.1463 -1.2725 44 1 0.2395 -7.7281 -2.1376 45 1 1.0886 -7.9869 0.7444 46 1 -0.1807 -6.9545 0.0267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754651706.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:18 Heat of formation + Delta-G solvation = -88.297569 kcal Electronic energy + Delta-G solvation = -29546.629616 eV Core-core repulsion = 25436.347012 eV Total energy + Delta-G solvation = -4110.282604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.91727 -41.14187 -40.35025 -39.03132 -36.77926 -35.17828 -34.99389 -34.25168 -33.05326 -31.55617 -30.53900 -29.55821 -27.76587 -25.58138 -24.86177 -24.58750 -22.81771 -22.13056 -21.50534 -20.84308 -20.36521 -19.81145 -19.15592 -18.14299 -17.61709 -17.56790 -17.23554 -17.04831 -16.77896 -16.43957 -15.91646 -15.64050 -15.53528 -15.22904 -15.09912 -15.01106 -14.84684 -14.33624 -14.12361 -14.00671 -13.75092 -13.64631 -13.07175 -12.95563 -12.78930 -12.12087 -11.99200 -11.87357 -11.80994 -11.76632 -11.65307 -11.51796 -11.41003 -11.36213 -11.22073 -11.13130 -10.91371 -10.90513 -10.04076 -9.82552 -8.97908 -7.92283 -5.22031 -0.15674 0.46811 1.41258 1.46498 1.48284 1.58055 1.91678 2.07728 2.35784 2.50572 2.56657 3.39160 3.41689 3.59895 3.64380 3.76451 3.85608 3.90910 4.17205 4.25409 4.28833 4.38077 4.46832 4.60355 4.65174 4.69460 4.74423 4.81804 4.90601 4.92294 4.93419 4.95362 5.10917 5.17794 5.21985 5.35095 5.41792 5.42892 5.48838 5.53047 5.58791 5.64389 5.72287 6.23718 6.27467 6.57931 7.06983 7.27562 7.34505 8.11799 8.33673 9.30927 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007403 B = 0.004369 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3781.162871 B = 6407.118821 C = 9284.598171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.293 1.293 6 H -0.301 1.301 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.743 5.743 10 C 0.142 3.858 11 C 0.148 3.852 12 H 0.063 0.937 13 N -0.686 5.686 14 C 0.587 3.413 15 O -0.587 6.587 16 C -0.262 4.262 17 C 0.089 3.911 18 O -0.135 6.135 19 C -0.093 4.093 20 C 0.612 3.388 21 N -0.815 5.815 22 O -0.566 6.566 23 C -0.086 4.086 24 C -0.091 4.091 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.117 4.117 28 C -0.119 4.119 29 H 0.248 0.752 30 H 0.371 0.629 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.409 0.591 34 H 0.269 0.731 35 H 0.422 0.578 36 H 0.421 0.579 37 H 0.146 0.854 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.765 -18.258 -15.931 24.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.220 1.220 6 H -0.228 1.228 7 C -0.371 4.371 8 H 0.099 0.901 9 N -0.386 5.386 10 C 0.015 3.985 11 C 0.043 3.957 12 H 0.082 0.918 13 N -0.337 5.337 14 C 0.375 3.625 15 O -0.468 6.468 16 C -0.266 4.266 17 C 0.016 3.984 18 O -0.027 6.027 19 C -0.144 4.144 20 C 0.397 3.603 21 N -0.379 5.379 22 O -0.446 6.446 23 C -0.107 4.107 24 C -0.111 4.111 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.157 4.157 29 H 0.056 0.944 30 H 0.203 0.797 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.247 0.753 34 H 0.285 0.715 35 H 0.254 0.746 36 H 0.255 0.745 37 H 0.164 0.836 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.163 -18.196 -14.838 23.479 hybrid contribution -0.256 1.450 0.266 1.496 sum -0.093 -16.746 -14.572 22.199 Atomic orbital electron populations 1.69885 1.06867 1.25703 1.59779 1.25577 0.96183 1.01176 1.03976 0.85085 0.78439 0.79901 0.76400 1.18517 1.22019 1.22826 1.19698 0.91567 0.85164 1.40639 0.90113 1.42572 1.05603 1.01134 1.89298 1.21218 0.93635 0.84444 0.99169 1.21165 0.90049 0.94855 0.89611 0.91828 1.45435 1.04206 1.72955 1.11130 1.17488 0.82632 0.74966 0.87391 1.90771 1.78137 1.52534 1.25350 1.20656 0.94070 1.17042 0.94848 1.25847 0.91273 0.93318 0.87951 1.83906 1.13462 1.69191 1.36166 1.21624 0.87742 1.16404 0.88652 1.16473 0.83994 0.75805 0.84076 1.43434 1.14121 1.74941 1.05401 1.90930 1.47214 1.52811 1.53688 1.21871 0.94020 0.97252 0.97593 1.22070 0.96930 0.91880 1.00221 1.22418 1.00459 0.97513 0.94923 1.22452 0.96136 0.95143 1.01414 1.22304 0.97797 0.99686 0.95697 1.22132 0.98129 0.96401 0.98994 0.94368 0.79700 0.95516 0.93484 0.75300 0.71541 0.74591 0.74501 0.83626 0.89429 0.91286 0.90718 0.91044 0.90074 0.91300 0.91893 0.91719 0.94344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.54 13.06 21.65 0.28 -61.26 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 3 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 7 C -0.24 -13.20 9.99 84.03 0.84 -12.36 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.74 -37.61 5.43 -343.46 -1.87 -39.47 16 10 C 0.14 5.32 5.85 86.38 0.51 5.82 16 11 C 0.15 4.73 2.03 44.99 0.09 4.82 16 12 H 0.06 2.55 6.91 -2.39 -0.02 2.53 16 13 N -0.69 -20.14 3.65 -445.73 -1.63 -21.76 16 14 C 0.59 21.03 6.99 86.68 0.61 21.63 16 15 O -0.59 -27.18 16.25 -4.03 -0.07 -27.25 16 16 C -0.26 -7.70 6.16 -20.08 -0.12 -7.82 16 17 C 0.09 1.66 11.64 67.72 0.79 2.45 16 18 O -0.13 -2.50 10.32 -0.69 -0.01 -2.51 16 19 C -0.09 -2.34 7.09 24.00 0.17 -2.17 16 20 C 0.61 14.74 8.06 86.48 0.70 15.44 16 21 N -0.81 -10.37 8.87 -176.32 -1.56 -11.93 16 22 O -0.57 -18.64 17.68 -4.26 -0.08 -18.72 16 23 C -0.09 -2.73 10.41 22.63 0.24 -2.49 16 24 C -0.09 -2.07 2.80 -10.07 -0.03 -2.10 16 25 C -0.12 -1.97 5.18 31.67 0.16 -1.81 16 26 C -0.11 -1.54 6.91 31.89 0.22 -1.32 16 27 C -0.12 -1.93 6.83 31.67 0.22 -1.72 16 28 C -0.12 -2.65 6.21 31.32 0.19 -2.45 16 29 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 30 H 0.37 21.04 7.31 -92.70 -0.68 20.36 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.57 7.24 -2.39 -0.02 1.55 16 33 H 0.41 9.15 6.11 -92.72 -0.57 8.59 16 34 H 0.27 2.05 7.47 -2.91 -0.02 2.03 16 35 H 0.42 2.96 8.57 -92.71 -0.79 2.17 16 36 H 0.42 3.79 8.93 -92.71 -0.83 2.96 16 37 H 0.15 5.22 8.06 -2.91 -0.02 5.20 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 1.12 6.04 -2.39 -0.01 1.10 16 40 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.04 1.10 6.70 -2.39 -0.02 1.08 16 Total: -1.00 -85.32 382.43 0.34 -84.98 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -1.80 Total: 37.58 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 5.04 Total: 11.91 kcal Atomic # 7 Polarization: -129.66 SS G_CDS: -4.78 Total: -134.43 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -0.15 Total: -48.47 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -85.32 0.34 -84.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754651706.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.320 kcal (2) G-P(sol) polarization free energy of solvation -85.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds