Wall clock time and date at job start Tue Mar 31 2020 19:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86791 * 120.00370 * 2 1 4 4 H 1.48505 * 109.47166 * 269.99820 * 3 2 1 5 5 H 1.48498 * 109.47089 * 29.99629 * 3 2 1 6 6 H 1.48500 * 109.47562 * 149.99804 * 3 2 1 7 7 C 1.38814 * 119.99390 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99730 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00325 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99945 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.52316 * 299.91806 * 10 9 7 12 12 O 1.42895 * 109.47271 * 60.07982 * 11 10 9 13 13 C 1.53041 * 109.49644 * 179.84019 * 10 9 7 14 14 C 1.53044 * 109.53368 * 301.40870 * 13 10 9 15 15 C 1.53624 * 109.24626 * 298.51154 * 14 13 10 16 16 N 1.46934 * 108.53859 * 54.85650 * 15 14 13 17 17 C 1.34777 * 120.62738 * 126.37104 * 16 15 14 18 18 O 1.21604 * 119.99794 * 185.40950 * 17 16 15 19 19 C 1.47395 * 119.99887 * 5.41325 * 17 16 15 20 20 C 1.47107 * 128.56944 * 36.50383 * 19 17 16 21 21 N 1.30015 * 105.33039 * 180.30469 * 20 19 17 22 22 O 1.20659 * 112.30366 * 359.75576 * 21 20 19 23 23 C 1.33492 * 113.15374 * 359.97438 * 22 21 20 24 24 C 1.50698 * 126.83057 * 180.02562 * 23 22 21 25 25 C 1.53005 * 117.49793 * 300.02977 * 24 23 22 26 26 C 1.52994 * 60.00053 * 107.48635 * 25 24 23 27 27 C 1.46924 * 118.73896 * 306.09244 * 16 15 14 28 28 H 0.97006 * 119.99932 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00055 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47054 * 180.08276 * 11 10 9 31 31 H 1.09000 * 109.46953 * 300.08159 * 11 10 9 32 32 H 0.96699 * 114.00157 * 179.97438 * 12 11 10 33 33 H 1.08998 * 109.46325 * 61.42850 * 13 10 9 34 34 H 1.09003 * 109.46036 * 181.39517 * 13 10 9 35 35 H 1.08995 * 109.49504 * 58.59173 * 14 13 10 36 36 H 1.08997 * 109.49471 * 178.65150 * 14 13 10 37 37 H 1.09003 * 109.73792 * 295.12250 * 15 14 13 38 38 H 1.08989 * 109.66482 * 174.55070 * 15 14 13 39 39 H 1.08005 * 127.33516 * 0.02562 * 20 19 17 40 40 H 1.09003 * 115.56913 * 154.33655 * 24 23 22 41 41 H 1.08997 * 117.49756 * 359.97438 * 25 24 23 42 42 H 1.09004 * 117.49562 * 214.97820 * 25 24 23 43 43 H 1.09005 * 117.50008 * 107.49148 * 26 25 24 44 44 H 1.09003 * 117.50027 * 252.51172 * 26 25 24 45 45 H 1.08997 * 109.58357 * 173.64988 * 27 16 15 46 46 H 1.09000 * 109.59160 * 294.07573 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3253 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0017 11 6 2.9373 -3.7407 -1.2475 12 8 3.8676 -2.6561 -1.2486 13 6 1.0637 -4.8205 0.0054 14 6 0.1619 -4.7191 1.2378 15 6 1.0240 -4.8160 2.5056 16 7 2.0711 -3.7874 2.4383 17 6 2.2369 -2.9094 3.4472 18 8 3.0397 -2.0025 3.3382 19 6 1.4453 -3.0484 4.6828 20 6 1.0219 -4.2799 5.3670 21 7 0.3438 -3.8820 6.4025 22 8 0.2825 -2.6791 6.4751 23 6 0.9226 -2.0599 5.4807 24 6 1.0423 -0.5724 5.2713 25 6 -0.2530 0.2224 5.0937 26 6 0.5453 0.3412 6.3934 27 6 2.9378 -3.7382 1.2529 28 1 -0.4850 0.8401 -0.0004 29 1 0.3553 -2.3881 0.0005 30 1 3.4807 -4.6855 -1.2465 31 1 2.3107 -3.6828 -2.1375 32 1 4.4592 -2.6461 -2.0135 33 1 0.4527 -4.7791 -0.8962 34 1 1.6091 -5.7639 0.0313 35 1 -0.3652 -3.7651 1.2252 36 1 -0.5614 -5.5345 1.2273 37 1 1.4840 -5.8025 2.5634 38 1 0.4028 -4.6481 3.3852 39 1 1.2265 -5.2979 5.0698 40 1 1.9148 -0.2456 4.7055 41 1 -1.1916 -0.3307 5.1279 42 1 -0.2325 1.0720 4.4110 43 1 1.0909 1.2690 6.5660 44 1 0.1319 -0.1337 7.2832 45 1 3.5797 -2.8589 1.3060 46 1 3.5508 -4.6386 1.2107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755091054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:42 Heat of formation + Delta-G solvation = 10.819434 kcal Electronic energy + Delta-G solvation = -31354.219276 eV Core-core repulsion = 27248.234707 eV Total energy + Delta-G solvation = -4105.984568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.96358 -41.19252 -39.24002 -38.34987 -37.13126 -35.63868 -34.80144 -33.76975 -32.64107 -32.48003 -30.40787 -27.58009 -26.63155 -25.55374 -25.11252 -24.79413 -23.38515 -22.95864 -22.27727 -20.65343 -19.73319 -19.23436 -18.78709 -18.50904 -17.79506 -17.75732 -17.17794 -16.63936 -16.59419 -16.03699 -15.71870 -15.66443 -15.28122 -15.05500 -14.77953 -14.56727 -14.42255 -14.20036 -13.69568 -13.52169 -13.31097 -13.21082 -12.90405 -12.74376 -12.66867 -12.55808 -12.54081 -12.22360 -12.06929 -11.99758 -11.80666 -11.54050 -11.38022 -11.33449 -11.28040 -10.99820 -10.75300 -10.53501 -10.23847 -9.50406 -8.76318 -7.76698 -4.97249 0.03254 0.76262 1.41371 1.42867 1.52788 1.58863 1.86473 2.30740 2.66480 2.75188 3.18657 3.21120 3.42364 3.49906 3.69674 3.71335 3.85931 3.90422 3.91412 3.98914 4.12462 4.17849 4.24080 4.32713 4.48614 4.55079 4.62158 4.64653 4.65115 4.75608 4.78078 4.84918 4.86677 4.93882 4.99942 5.03232 5.06581 5.11469 5.22066 5.47196 5.52116 5.72405 5.95683 6.47415 6.51647 7.03998 7.18386 7.26254 7.56525 8.25556 8.48083 9.47466 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010128 B = 0.006050 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.871064 B = 4626.650380 C = 6423.147491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.086 4.086 3 Si 0.942 3.058 4 H -0.294 1.294 5 H -0.302 1.302 6 H -0.291 1.291 7 C -0.163 4.163 8 H 0.079 0.921 9 N -0.709 5.709 10 C 0.174 3.826 11 C 0.076 3.924 12 O -0.574 6.574 13 C -0.108 4.108 14 C -0.128 4.128 15 C 0.099 3.901 16 N -0.583 5.583 17 C 0.591 3.409 18 O -0.574 6.574 19 C -0.269 4.269 20 C 0.046 3.954 21 N -0.366 5.366 22 O 0.086 5.914 23 C 0.075 3.925 24 C -0.120 4.120 25 C -0.157 4.157 26 C -0.129 4.129 27 C 0.116 3.884 28 H 0.239 0.761 29 H 0.370 0.630 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.375 0.625 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.034 0.966 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.240 0.760 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.055 0.945 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 -14.532 7.710 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.276 4.276 3 Si 0.776 3.224 4 H -0.222 1.222 5 H -0.229 1.229 6 H -0.217 1.217 7 C -0.296 4.296 8 H 0.097 0.903 9 N -0.348 5.348 10 C 0.083 3.917 11 C -0.004 4.004 12 O -0.380 6.380 13 C -0.146 4.146 14 C -0.166 4.166 15 C -0.022 4.022 16 N -0.313 5.313 17 C 0.379 3.621 18 O -0.454 6.454 19 C -0.277 4.277 20 C -0.136 4.136 21 N -0.074 5.074 22 O 0.029 5.971 23 C 0.011 3.989 24 C -0.140 4.140 25 C -0.194 4.194 26 C -0.166 4.166 27 C -0.008 4.008 28 H 0.048 0.952 29 H 0.203 0.797 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.223 0.777 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.053 0.947 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.103 0.897 39 H 0.256 0.744 40 H 0.136 0.864 41 H 0.123 0.877 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.073 0.927 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.427 -14.409 9.218 17.111 hybrid contribution 0.858 1.669 -1.692 2.527 sum 1.284 -12.740 7.525 14.852 Atomic orbital electron populations 1.69766 1.05598 1.24354 1.63198 1.25113 0.95992 0.99474 1.06995 0.85546 0.77564 0.82501 0.76794 1.22176 1.22891 1.21713 1.19585 0.91445 0.84449 1.34116 0.90286 1.42529 1.04745 1.00346 1.87152 1.20444 0.91930 0.87296 0.92065 1.22719 0.90985 0.88912 0.97785 1.86791 1.50960 1.51016 1.49238 1.21638 0.97124 0.97311 0.98545 1.21907 0.98247 1.02264 0.94209 1.22320 0.89088 0.91612 0.99226 1.47685 1.34395 1.31952 1.17316 1.17107 0.81505 0.81136 0.82392 1.90769 1.39105 1.33626 1.81914 1.22046 1.10660 0.93948 1.00999 1.26825 0.95525 1.00936 0.90355 1.73606 1.20631 0.91917 1.21290 1.84494 1.57193 1.14126 1.41287 1.23730 0.92588 0.95509 0.87034 1.20570 1.01915 0.83108 1.08373 1.23081 0.93665 1.01434 1.01237 1.23235 1.00969 1.00320 0.92034 1.22010 0.92636 1.01504 0.84675 0.95242 0.79736 0.91324 0.94729 0.77712 0.91517 0.87602 0.94676 0.87500 0.87068 0.89683 0.74356 0.86435 0.87705 0.88376 0.85813 0.85866 0.92660 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 2 C -0.09 -5.20 5.50 84.86 0.47 -4.73 16 3 Si 0.94 51.02 29.55 68.60 2.03 53.05 16 4 H -0.29 -15.51 7.11 99.48 0.71 -14.81 16 5 H -0.30 -16.35 7.11 99.48 0.71 -15.64 16 6 H -0.29 -15.91 7.11 99.48 0.71 -15.21 16 7 C -0.16 -9.24 8.21 84.03 0.69 -8.55 16 8 H 0.08 4.66 5.28 -2.91 -0.02 4.65 16 9 N -0.71 -34.04 4.75 -302.99 -1.44 -35.48 16 10 C 0.17 6.09 0.68 3.68 0.00 6.09 16 11 C 0.08 2.39 6.08 71.98 0.44 2.83 16 12 O -0.57 -21.08 10.11 -148.98 -1.51 -22.58 16 13 C -0.11 -2.72 4.76 30.62 0.15 -2.58 16 14 C -0.13 -3.20 5.93 30.82 0.18 -3.01 16 15 C 0.10 2.30 5.63 86.51 0.49 2.79 16 16 N -0.58 -19.69 2.88 -821.98 -2.37 -22.06 16 17 C 0.59 23.76 7.57 86.65 0.66 24.41 16 18 O -0.57 -28.76 15.48 -4.04 -0.06 -28.82 16 19 C -0.27 -9.00 5.55 -18.74 -0.10 -9.11 16 20 C 0.05 1.13 10.06 87.29 0.88 2.01 16 21 N -0.37 -9.97 12.01 -54.18 -0.65 -10.62 16 22 O 0.09 2.49 10.86 77.00 0.84 3.33 16 23 C 0.07 2.46 7.00 25.48 0.18 2.64 16 24 C -0.12 -4.01 6.03 -11.54 -0.07 -4.08 16 25 C -0.16 -4.68 10.23 30.59 0.31 -4.37 16 26 C -0.13 -3.05 10.18 30.59 0.31 -2.74 16 27 C 0.12 4.14 4.86 86.36 0.42 4.56 16 28 H 0.24 14.86 8.31 -92.70 -0.77 14.09 16 29 H 0.37 19.39 6.43 -92.71 -0.60 18.79 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.38 9.87 9.12 -74.06 -0.68 9.20 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.03 1.22 6.75 -2.39 -0.02 1.20 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.91 4.58 -2.39 -0.01 1.90 16 39 H 0.24 3.60 7.38 -2.91 -0.02 3.58 16 40 H 0.12 4.73 7.26 -2.39 -0.02 4.72 16 41 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 44 H 0.12 2.41 8.02 -2.39 -0.02 2.39 16 45 H 0.05 2.57 5.69 -2.39 -0.01 2.56 16 46 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -81.87 368.53 1.88 -79.99 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -0.23 Total: 37.88 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.00 Total: 6.17 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -4.18 Total: -129.02 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -0.73 Total: -48.07 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.03 Total: 53.05 kcal Total: -81.87 1.88 -79.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755091054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.807 kcal (2) G-P(sol) polarization free energy of solvation -81.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds