Wall clock time and date at job start Tue Mar 31 2020 18:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48496 * 109.47377 * 240.00006 * 3 2 1 5 5 H 1.48502 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47286 * 119.99683 * 3 2 1 7 7 C 1.38813 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00036 * 174.46085 * 7 2 1 9 9 N 1.36939 * 119.99815 * 354.46242 * 7 2 1 10 10 C 1.46927 * 120.62795 * 141.93847 * 9 7 2 11 11 C 1.53190 * 108.77313 * 126.37123 * 10 9 7 12 12 C 1.53046 * 109.31534 * 54.63592 * 11 10 9 13 13 C 1.52998 * 109.46123 * 178.62786 * 12 11 10 14 14 O 1.42904 * 109.46920 * 185.37262 * 13 12 11 15 15 N 1.46498 * 109.46046 * 58.65238 * 12 11 10 16 16 C 1.34781 * 119.99789 * 60.31140 * 15 12 11 17 17 O 1.21282 * 119.99907 * 355.61403 * 16 15 12 18 18 C 1.50695 * 119.99837 * 175.60549 * 16 15 12 19 19 N 1.46508 * 109.46955 * 180.02562 * 18 16 15 20 20 C 1.35764 * 119.62180 * 90.00483 * 19 18 16 21 21 C 1.35347 * 120.70167 * 180.02562 * 20 19 18 22 22 C 1.40194 * 119.94770 * 359.96812 * 21 20 19 23 23 C 1.36397 * 119.26581 * 0.02562 * 22 21 20 24 24 C 1.34652 * 119.62743 * 269.95698 * 19 18 16 25 25 O 1.22067 * 119.98219 * 0.04683 * 24 19 18 26 26 C 1.53046 * 109.52499 * 298.64375 * 12 11 10 27 27 C 1.46928 * 120.63057 * 321.92195 * 9 7 2 28 28 H 0.96994 * 120.00754 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.58727 * 6.58578 * 10 9 7 30 30 H 1.08994 * 109.70436 * 246.22814 * 10 9 7 31 31 H 1.08998 * 109.49876 * 294.68349 * 11 10 9 32 32 H 1.08995 * 109.49855 * 174.58792 * 11 10 9 33 33 H 1.08997 * 109.47106 * 305.37860 * 13 12 11 34 34 H 1.09002 * 109.47007 * 65.38191 * 13 12 11 35 35 H 0.96699 * 113.99781 * 180.02562 * 14 13 12 36 36 H 0.96997 * 120.00458 * 240.32180 * 15 12 11 37 37 H 1.09000 * 109.47339 * 60.01081 * 18 16 15 38 38 H 1.09000 * 109.47475 * 300.00167 * 18 16 15 39 39 H 1.08001 * 119.64989 * 359.97438 * 20 19 18 40 40 H 1.08003 * 120.02875 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.37096 * 180.02562 * 22 21 20 42 42 H 1.07997 * 120.35016 * 179.72328 * 23 22 21 43 43 H 1.08997 * 109.49712 * 181.31091 * 26 12 11 44 44 H 1.09005 * 109.49693 * 301.40465 * 26 12 11 45 45 H 1.09001 * 109.58649 * 353.41390 * 27 9 7 46 46 H 1.08999 * 109.58734 * 113.84340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0865 -1.2043 -0.0897 9 7 1.3305 -2.3852 0.1155 10 6 1.7538 -3.5688 -0.6452 11 6 1.9518 -4.7354 0.3277 12 6 0.6726 -4.9369 1.1434 13 6 0.8548 -6.1232 2.0923 14 8 -0.3784 -6.3902 2.7632 15 7 -0.4470 -5.2042 0.2372 16 6 -0.4135 -6.2777 -0.5770 17 8 0.5763 -6.9775 -0.6174 18 6 -1.6059 -6.6087 -1.4369 19 7 -1.3219 -7.8116 -2.2235 20 6 -1.6307 -9.0329 -1.7173 21 6 -1.3773 -10.1585 -2.4250 22 6 -0.7906 -10.0694 -3.6951 23 6 -0.4811 -8.8415 -4.2021 24 6 -0.7584 -7.6932 -3.4408 25 8 -0.4866 -6.5882 -3.8823 26 6 0.3801 -3.6737 1.9565 27 6 0.1641 -2.4953 1.0022 28 1 -0.4851 0.8399 -0.0004 29 1 2.6921 -3.3573 -1.1579 30 1 0.9885 -3.8287 -1.3765 31 1 2.7804 -4.5120 0.9997 32 1 2.1724 -5.6435 -0.2332 33 1 1.1558 -7.0018 1.5219 34 1 1.6241 -5.8858 2.8272 35 1 -0.3367 -7.1315 3.3827 36 1 -1.2124 -4.6085 0.2231 37 1 -1.8121 -5.7754 -2.1085 38 1 -2.4737 -6.7869 -0.8018 39 1 -2.0826 -9.1072 -0.7392 40 1 -1.6278 -11.1245 -2.0120 41 1 -0.5858 -10.9631 -4.2659 42 1 -0.0246 -8.7528 -5.1768 43 1 -0.5181 -3.8262 2.5549 44 1 1.2235 -3.4603 2.6132 45 1 0.0537 -1.5755 1.5765 46 1 -0.7326 -2.6668 0.4068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755180874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:16 Heat of formation + Delta-G solvation = -50.631248 kcal Electronic energy + Delta-G solvation = -30545.205478 eV Core-core repulsion = 26436.556208 eV Total energy + Delta-G solvation = -4108.649270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.50591 -40.02980 -37.55873 -36.86960 -36.14676 -34.56886 -34.02867 -32.08482 -30.53275 -30.01031 -29.90059 -28.12589 -26.68654 -24.06924 -23.84554 -23.03853 -22.29461 -21.28692 -20.42253 -18.79953 -17.80251 -17.39978 -17.33393 -17.16591 -16.66523 -16.36673 -15.30848 -15.15942 -15.08078 -14.85207 -14.56536 -14.22822 -14.07568 -13.95051 -13.56613 -13.26104 -13.18829 -12.73448 -12.60948 -12.47744 -12.19252 -11.98440 -11.88759 -11.80433 -11.45770 -11.23034 -10.93000 -10.76791 -10.54942 -10.42439 -10.25965 -10.06241 -9.94775 -9.89190 -9.77447 -9.59857 -9.11525 -8.65506 -8.46457 -8.03197 -6.48760 -5.79034 -3.32559 0.74449 1.83374 2.41880 2.76598 3.35222 3.38996 3.43650 3.45201 3.72589 4.36914 4.40187 4.49730 4.52425 4.72208 4.78866 4.97989 5.10634 5.17124 5.25499 5.31666 5.35559 5.44039 5.54594 5.62864 5.71371 5.83581 5.90391 5.94380 6.10322 6.15454 6.25921 6.34883 6.39482 6.58250 6.58652 6.64955 6.86704 6.95404 7.00283 7.07391 7.28869 7.58578 7.69093 7.79121 7.82895 8.04254 8.41763 8.53723 9.25261 9.83531 10.46750 11.29391 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.003448 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.471765 B = 8119.506882 C = 9182.242379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.012 3.988 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.060 0.940 9 N -0.590 5.590 10 C 0.153 3.847 11 C -0.145 4.145 12 C 0.196 3.804 13 C 0.065 3.935 14 O -0.567 6.567 15 N -0.692 5.692 16 C 0.508 3.492 17 O -0.537 6.537 18 C 0.067 3.933 19 N -0.477 5.477 20 C 0.147 3.853 21 C -0.239 4.239 22 C -0.018 4.018 23 C -0.241 4.241 24 C 0.517 3.483 25 O -0.542 6.542 26 C -0.143 4.143 27 C 0.177 3.823 28 H 0.255 0.745 29 H 0.052 0.948 30 H 0.018 0.982 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.370 0.630 36 H 0.403 0.597 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.146 0.854 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 -21.242 1.773 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.187 4.187 3 Si 0.733 3.267 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.388 4.388 8 H 0.078 0.922 9 N -0.313 5.313 10 C 0.027 3.973 11 C -0.184 4.184 12 C 0.110 3.890 13 C -0.013 4.013 14 O -0.371 6.371 15 N -0.343 5.343 16 C 0.292 3.708 17 O -0.414 6.414 18 C -0.059 4.059 19 N -0.187 5.187 20 C 0.019 3.981 21 C -0.263 4.263 22 C -0.040 4.040 23 C -0.263 4.263 24 C 0.318 3.682 25 O -0.424 6.424 26 C -0.183 4.183 27 C 0.050 3.950 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.215 0.785 36 H 0.239 0.761 37 H 0.147 0.853 38 H 0.137 0.863 39 H 0.175 0.825 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.101 0.899 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.073 -20.284 1.104 21.202 hybrid contribution 0.299 0.598 0.440 0.800 sum -5.773 -19.687 1.545 20.574 Atomic orbital electron populations 1.69922 1.05325 1.25661 1.53700 1.25341 0.95450 0.98430 0.99525 0.86367 0.78913 0.83216 0.78169 1.20786 1.21602 1.20926 1.19070 0.90053 0.83395 1.46268 0.92236 1.43929 1.33319 1.07181 1.46859 1.20804 0.97907 0.86628 0.91960 1.22409 0.95292 1.00985 0.99759 1.20318 0.86946 0.93673 0.88060 1.22721 0.85659 0.98687 0.94282 1.86478 1.34574 1.55362 1.60693 1.45827 1.22553 1.26601 1.39340 1.20385 0.88730 0.81463 0.80176 1.90646 1.32971 1.51029 1.66772 1.21857 0.97981 0.89854 0.96171 1.45058 1.50389 1.06580 1.16659 1.21893 0.94112 0.83912 0.98163 1.20564 1.10515 0.97877 0.97310 1.21388 0.90757 0.97794 0.94069 1.22094 1.09689 0.91656 1.02841 1.17169 0.79151 0.91404 0.80456 1.91016 1.53462 1.27778 1.70103 1.22480 1.01564 0.95282 0.98928 1.20688 0.88903 0.94918 0.90447 0.93539 0.92925 0.96382 0.91802 0.90617 0.92268 0.93422 0.78480 0.76114 0.85288 0.86258 0.82452 0.83962 0.85024 0.83580 0.91932 0.91309 0.89902 0.96482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.29 55.49 0.63 -25.31 16 2 C 0.01 0.33 5.13 -17.43 -0.09 0.24 16 3 Si 0.90 21.84 29.56 -169.99 -5.02 16.81 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.26 -7.17 9.51 -15.06 -0.14 -7.31 16 8 H 0.06 1.65 7.83 -52.49 -0.41 1.23 16 9 N -0.59 -14.86 2.95 -172.34 -0.51 -15.37 16 10 C 0.15 3.49 6.26 -3.71 -0.02 3.47 16 11 C -0.14 -2.78 4.67 -26.61 -0.12 -2.90 16 12 C 0.20 3.32 0.44 -131.77 -0.06 3.26 16 13 C 0.07 0.94 5.63 37.16 0.21 1.15 16 14 O -0.57 -7.21 12.94 -35.23 -0.46 -7.67 16 15 N -0.69 -10.90 3.86 -47.57 -0.18 -11.09 16 16 C 0.51 7.88 7.31 -10.99 -0.08 7.80 16 17 O -0.54 -9.76 12.73 5.56 0.07 -9.69 16 18 C 0.07 0.81 5.82 -5.19 -0.03 0.78 16 19 N -0.48 -5.99 2.07 -121.06 -0.25 -6.24 16 20 C 0.15 1.32 10.28 -16.84 -0.17 1.14 16 21 C -0.24 -1.89 10.01 -39.88 -0.40 -2.29 16 22 C -0.02 -0.16 10.10 -39.51 -0.40 -0.56 16 23 C -0.24 -2.96 9.99 -39.38 -0.39 -3.35 16 24 C 0.52 8.06 7.40 -15.45 -0.11 7.95 16 25 O -0.54 -10.89 16.64 4.86 0.08 -10.81 16 26 C -0.14 -2.62 4.87 -26.62 -0.13 -2.75 16 27 C 0.18 4.03 4.93 -3.72 -0.02 4.02 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.05 1.22 7.93 -51.93 -0.41 0.81 16 30 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.08 1.50 6.09 -51.93 -0.32 1.19 16 33 H 0.06 0.91 6.45 -51.93 -0.34 0.58 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.37 3.01 9.12 45.56 0.42 3.43 16 36 H 0.40 6.05 7.26 -40.82 -0.30 5.75 16 37 H 0.13 1.70 7.39 -51.93 -0.38 1.32 16 38 H 0.12 0.92 8.01 -51.93 -0.42 0.50 16 39 H 0.16 0.89 8.04 -52.49 -0.42 0.47 16 40 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.15 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.06 1.07 7.80 -51.93 -0.40 0.66 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.08 2.14 6.48 -51.93 -0.34 1.80 16 46 H 0.02 0.40 6.93 -51.93 -0.36 0.04 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -36.40 369.68 -7.79 -44.19 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.75 Total: 8.95 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: -1.97 Total: 10.65 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.32 Total: -58.01 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.30 Total: -28.17 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.40 -7.79 -44.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755180874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.441 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds