Wall clock time and date at job start Tue Mar 31 2020 18:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99660 * 2 1 4 4 H 1.48496 * 109.47377 * 240.00006 * 3 2 1 5 5 H 1.48502 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47286 * 119.99683 * 3 2 1 7 7 C 1.38813 * 120.00364 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00036 * 174.46085 * 7 2 1 9 9 N 1.36939 * 119.99815 * 354.46242 * 7 2 1 10 10 C 1.46927 * 120.62795 * 141.93847 * 9 7 2 11 11 C 1.53190 * 108.77313 * 126.37123 * 10 9 7 12 12 C 1.53046 * 109.31534 * 54.63592 * 11 10 9 13 13 C 1.52998 * 109.46123 * 178.62786 * 12 11 10 14 14 O 1.42904 * 109.46920 * 185.37262 * 13 12 11 15 15 N 1.46498 * 109.46046 * 58.65238 * 12 11 10 16 16 C 1.34781 * 119.99789 * 60.31140 * 15 12 11 17 17 O 1.21282 * 119.99907 * 355.61403 * 16 15 12 18 18 C 1.50695 * 119.99837 * 175.60549 * 16 15 12 19 19 N 1.46508 * 109.46955 * 180.02562 * 18 16 15 20 20 C 1.35764 * 119.62180 * 90.00483 * 19 18 16 21 21 C 1.35347 * 120.70167 * 180.02562 * 20 19 18 22 22 C 1.40194 * 119.94770 * 359.96812 * 21 20 19 23 23 C 1.36397 * 119.26581 * 0.02562 * 22 21 20 24 24 C 1.34652 * 119.62743 * 269.95698 * 19 18 16 25 25 O 1.22067 * 119.98219 * 0.04683 * 24 19 18 26 26 C 1.53046 * 109.52499 * 298.64375 * 12 11 10 27 27 C 1.46928 * 120.63057 * 321.92195 * 9 7 2 28 28 H 0.96994 * 120.00754 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.58727 * 6.58578 * 10 9 7 30 30 H 1.08994 * 109.70436 * 246.22814 * 10 9 7 31 31 H 1.08998 * 109.49876 * 294.68349 * 11 10 9 32 32 H 1.08995 * 109.49855 * 174.58792 * 11 10 9 33 33 H 1.08997 * 109.47106 * 305.37860 * 13 12 11 34 34 H 1.09002 * 109.47007 * 65.38191 * 13 12 11 35 35 H 0.96699 * 113.99781 * 180.02562 * 14 13 12 36 36 H 0.96997 * 120.00458 * 240.32180 * 15 12 11 37 37 H 1.09000 * 109.47339 * 60.01081 * 18 16 15 38 38 H 1.09000 * 109.47475 * 300.00167 * 18 16 15 39 39 H 1.08001 * 119.64989 * 359.97438 * 20 19 18 40 40 H 1.08003 * 120.02875 * 180.02562 * 21 20 19 41 41 H 1.07999 * 120.37096 * 180.02562 * 22 21 20 42 42 H 1.07997 * 120.35016 * 179.72328 * 23 22 21 43 43 H 1.08997 * 109.49712 * 181.31091 * 26 12 11 44 44 H 1.09005 * 109.49693 * 301.40465 * 26 12 11 45 45 H 1.09001 * 109.58649 * 353.41390 * 27 9 7 46 46 H 1.08999 * 109.58734 * 113.84340 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0865 -1.2043 -0.0897 9 7 1.3305 -2.3852 0.1155 10 6 1.7538 -3.5688 -0.6452 11 6 1.9518 -4.7354 0.3277 12 6 0.6726 -4.9369 1.1434 13 6 0.8548 -6.1232 2.0923 14 8 -0.3784 -6.3902 2.7632 15 7 -0.4470 -5.2042 0.2372 16 6 -0.4135 -6.2777 -0.5770 17 8 0.5763 -6.9775 -0.6174 18 6 -1.6059 -6.6087 -1.4369 19 7 -1.3219 -7.8116 -2.2235 20 6 -1.6307 -9.0329 -1.7173 21 6 -1.3773 -10.1585 -2.4250 22 6 -0.7906 -10.0694 -3.6951 23 6 -0.4811 -8.8415 -4.2021 24 6 -0.7584 -7.6932 -3.4408 25 8 -0.4866 -6.5882 -3.8823 26 6 0.3801 -3.6737 1.9565 27 6 0.1641 -2.4953 1.0022 28 1 -0.4851 0.8399 -0.0004 29 1 2.6921 -3.3573 -1.1579 30 1 0.9885 -3.8287 -1.3765 31 1 2.7804 -4.5120 0.9997 32 1 2.1724 -5.6435 -0.2332 33 1 1.1558 -7.0018 1.5219 34 1 1.6241 -5.8858 2.8272 35 1 -0.3367 -7.1315 3.3827 36 1 -1.2124 -4.6085 0.2231 37 1 -1.8121 -5.7754 -2.1085 38 1 -2.4737 -6.7869 -0.8018 39 1 -2.0826 -9.1072 -0.7392 40 1 -1.6278 -11.1245 -2.0120 41 1 -0.5858 -10.9631 -4.2659 42 1 -0.0246 -8.7528 -5.1768 43 1 -0.5181 -3.8262 2.5549 44 1 1.2235 -3.4603 2.6132 45 1 0.0537 -1.5755 1.5765 46 1 -0.7326 -2.6668 0.4068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755180874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:15 Heat of formation + Delta-G solvation = -78.464805 kcal Electronic energy + Delta-G solvation = -30546.412432 eV Core-core repulsion = 26436.556208 eV Total energy + Delta-G solvation = -4109.856223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49739 -41.33426 -38.96912 -37.93325 -37.42746 -35.67621 -35.40963 -33.79133 -32.16277 -31.69861 -30.81337 -29.22909 -28.29597 -25.66064 -24.86200 -24.11902 -23.91777 -22.72649 -21.87228 -20.29104 -19.06483 -18.58432 -18.36029 -18.27807 -18.06502 -17.26805 -16.89475 -16.47559 -16.37075 -16.29622 -15.77932 -15.48259 -15.30275 -15.15757 -15.04768 -14.88159 -14.59840 -14.34191 -14.01174 -13.47149 -13.30338 -13.25193 -13.12178 -13.00324 -12.91290 -12.71692 -12.69952 -12.60816 -12.31091 -12.01628 -11.92909 -11.54381 -11.48956 -11.23500 -11.06096 -10.95039 -10.58060 -10.41420 -9.98284 -8.94091 -8.54659 -7.90861 -5.48795 -0.04942 0.97495 1.44520 1.46556 1.48873 1.53138 1.56888 2.23466 2.47377 2.77977 3.23249 3.29711 3.56030 3.68174 3.69718 3.79685 3.94873 3.97073 4.05429 4.17295 4.24448 4.25647 4.39525 4.40762 4.54069 4.55829 4.62896 4.65989 4.71591 4.87268 4.98661 5.04859 5.08368 5.17178 5.21080 5.22434 5.41350 5.42242 5.60113 5.61729 5.69609 5.70612 6.10389 6.41684 6.54821 6.92915 7.01027 7.15598 7.19333 7.79495 8.37699 9.14224 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015901 B = 0.003448 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.471765 B = 8119.506882 C = 9182.242379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.036 4.036 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.277 4.277 8 H 0.055 0.945 9 N -0.604 5.604 10 C 0.157 3.843 11 C -0.131 4.131 12 C 0.196 3.804 13 C 0.082 3.918 14 O -0.571 6.571 15 N -0.693 5.693 16 C 0.507 3.493 17 O -0.565 6.565 18 C 0.070 3.930 19 N -0.477 5.477 20 C 0.136 3.864 21 C -0.230 4.230 22 C 0.010 3.990 23 C -0.286 4.286 24 C 0.494 3.506 25 O -0.616 6.616 26 C -0.124 4.124 27 C 0.184 3.816 28 H 0.253 0.747 29 H 0.037 0.963 30 H -0.003 1.003 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.394 0.606 36 H 0.406 0.594 37 H 0.110 0.890 38 H 0.172 0.828 39 H 0.199 0.801 40 H 0.187 0.813 41 H 0.170 0.830 42 H 0.140 0.860 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 -24.259 3.867 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.233 4.233 3 Si 0.796 3.204 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.408 4.408 8 H 0.073 0.927 9 N -0.328 5.328 10 C 0.031 3.969 11 C -0.171 4.171 12 C 0.109 3.891 13 C 0.003 3.997 14 O -0.378 6.378 15 N -0.344 5.344 16 C 0.292 3.708 17 O -0.444 6.444 18 C -0.055 4.055 19 N -0.186 5.186 20 C 0.010 3.990 21 C -0.252 4.252 22 C -0.012 4.012 23 C -0.308 4.308 24 C 0.299 3.701 25 O -0.504 6.504 26 C -0.164 4.164 27 C 0.059 3.941 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.015 0.985 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.243 0.757 36 H 0.242 0.758 37 H 0.129 0.871 38 H 0.190 0.810 39 H 0.216 0.784 40 H 0.204 0.796 41 H 0.187 0.813 42 H 0.158 0.842 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -7.091 -23.378 3.246 24.645 hybrid contribution 0.558 1.388 -0.202 1.510 sum -6.533 -21.990 3.044 23.141 Atomic orbital electron populations 1.70072 1.06513 1.26142 1.54392 1.26058 0.96305 1.01473 0.99420 0.85352 0.77674 0.79105 0.78286 1.20681 1.21496 1.19907 1.19345 0.90262 0.84742 1.46413 0.92735 1.44138 1.33737 1.07157 1.47797 1.20747 0.96311 0.87418 0.92404 1.22197 0.97097 0.98672 0.99123 1.20208 0.86029 0.94459 0.88359 1.22347 0.86656 0.96756 0.93947 1.86414 1.33365 1.56818 1.61245 1.45812 1.22245 1.26840 1.39474 1.20893 0.89286 0.80761 0.79815 1.90624 1.34221 1.51988 1.67590 1.21940 0.98088 0.89720 0.95798 1.45074 1.49643 1.08046 1.15809 1.22739 0.93740 0.82629 0.99879 1.21187 1.08300 0.99370 0.96325 1.21882 0.87415 0.97469 0.94418 1.22069 1.13087 0.92252 1.03373 1.17736 0.79278 0.91415 0.81630 1.90957 1.57321 1.30120 1.71980 1.22226 1.02416 0.93808 0.97913 1.20528 0.87750 0.95475 0.90364 0.93828 0.94432 0.98513 0.91397 0.91139 0.92907 0.92233 0.75727 0.75760 0.87144 0.81046 0.78372 0.79616 0.81259 0.84177 0.89857 0.91472 0.93082 0.97550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.64 11.29 21.65 0.24 -54.40 16 2 C -0.04 -2.02 5.13 84.86 0.43 -1.59 16 3 Si 0.97 45.62 29.56 68.60 2.03 47.65 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.28 -15.86 9.51 84.03 0.80 -15.06 16 8 H 0.06 3.11 7.83 -2.91 -0.02 3.08 16 9 N -0.60 -31.49 2.95 -699.16 -2.07 -33.56 16 10 C 0.16 7.49 6.26 86.36 0.54 8.03 16 11 C -0.13 -5.09 4.67 30.67 0.14 -4.95 16 12 C 0.20 6.45 0.44 3.63 0.00 6.45 16 13 C 0.08 2.16 5.63 71.98 0.41 2.56 16 14 O -0.57 -12.36 12.94 -148.98 -1.93 -14.29 16 15 N -0.69 -21.45 3.86 -422.79 -1.63 -23.08 16 16 C 0.51 15.44 7.31 87.65 0.64 16.08 16 17 O -0.56 -20.33 12.73 -3.04 -0.04 -20.37 16 18 C 0.07 1.64 5.82 85.63 0.50 2.14 16 19 N -0.48 -11.55 2.07 -655.06 -1.36 -12.91 16 20 C 0.14 1.94 10.28 83.42 0.86 2.80 16 21 C -0.23 -2.56 10.01 22.08 0.22 -2.34 16 22 C 0.01 0.15 10.10 22.32 0.23 0.37 16 23 C -0.29 -7.15 9.99 22.40 0.22 -6.92 16 24 C 0.49 16.14 7.40 84.82 0.63 16.77 16 25 O -0.62 -27.05 16.64 -5.53 -0.09 -27.14 16 26 C -0.12 -4.46 4.87 30.67 0.15 -4.31 16 27 C 0.18 8.62 4.93 86.35 0.43 9.04 16 28 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.04 1.84 7.93 -2.39 -0.02 1.82 16 30 H 0.00 -0.16 7.74 -2.39 -0.02 -0.18 16 31 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.07 2.84 6.09 -2.39 -0.01 2.83 16 33 H 0.05 1.50 6.45 -2.39 -0.02 1.48 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.39 4.69 9.12 -74.06 -0.68 4.01 16 36 H 0.41 12.06 7.26 -92.71 -0.67 11.39 16 37 H 0.11 3.08 7.39 -2.39 -0.02 3.06 16 38 H 0.17 2.08 8.01 -2.39 -0.02 2.06 16 39 H 0.20 1.12 8.04 -2.91 -0.02 1.10 16 40 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 41 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 43 H 0.08 2.67 7.80 -2.39 -0.02 2.65 16 44 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 45 H 0.05 2.71 6.48 -2.39 -0.02 2.69 16 46 H 0.01 0.31 6.93 -2.39 -0.02 0.30 16 Total: -1.00 -85.47 369.68 1.02 -84.45 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.33 Total: 24.58 kcal Atomic # 6 Polarization: 22.88 SS G_CDS: 6.19 Total: 29.07 kcal Atomic # 7 Polarization: -119.14 SS G_CDS: -4.81 Total: -123.95 kcal Atomic # 8 Polarization: -59.75 SS G_CDS: -2.06 Total: -61.81 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -85.47 1.02 -84.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755180874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.985 kcal (2) G-P(sol) polarization free energy of solvation -85.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds