Wall clock time and date at job start Tue Mar 31 2020 18:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99706 * 2 1 4 4 H 1.48502 * 109.46506 * 239.99635 * 3 2 1 5 5 H 1.48500 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47377 * 119.99621 * 3 2 1 7 7 C 1.38810 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99740 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00276 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00092 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47279 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47433 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47288 * 180.02562 * 12 11 10 14 14 C 1.42893 * 113.99978 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47023 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47258 * 65.00132 * 15 14 13 17 17 C 1.34773 * 119.99894 * 180.02562 * 16 15 14 18 18 O 1.21358 * 120.00137 * 359.97438 * 17 16 15 19 19 C 1.49359 * 119.99889 * 179.97438 * 17 16 15 20 20 O 1.21372 * 119.99795 * 0.02562 * 19 17 16 21 21 N 1.34773 * 119.99889 * 179.97438 * 19 17 16 22 22 C 1.39729 * 119.99927 * 184.62357 * 21 19 17 23 23 C 1.38935 * 120.07620 * 144.90305 * 22 21 19 24 24 C 1.38092 * 119.91934 * 179.97438 * 23 22 21 25 25 C 1.38284 * 120.08141 * 0.02562 * 24 23 22 26 26 C 1.38299 * 120.15416 * 359.97438 * 25 24 23 27 27 C 1.38105 * 120.07290 * 0.02562 * 26 25 24 28 28 H 0.96995 * 119.99860 * 0.02562 * 1 2 3 29 29 H 0.97006 * 119.99883 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47242 * 60.00321 * 10 9 7 31 31 H 1.09001 * 109.47640 * 300.00267 * 10 9 7 32 32 H 1.09008 * 109.46763 * 59.99878 * 11 10 9 33 33 H 1.08995 * 109.47325 * 300.00218 * 11 10 9 34 34 H 1.08998 * 109.46505 * 60.00254 * 12 11 10 35 35 H 1.08995 * 109.47239 * 300.00511 * 12 11 10 36 36 H 1.09002 * 109.47258 * 60.00389 * 14 13 12 37 37 H 1.09000 * 109.47104 * 299.99940 * 14 13 12 38 38 H 1.09003 * 109.47122 * 304.99639 * 15 14 13 39 39 H 1.09000 * 109.46905 * 185.00270 * 15 14 13 40 40 H 0.97004 * 119.99951 * 359.97438 * 16 15 14 41 41 H 0.96996 * 120.00261 * 4.62428 * 21 19 17 42 42 H 1.08001 * 120.03532 * 359.70558 * 23 22 21 43 43 H 1.08007 * 119.95818 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.92873 * 179.97438 * 25 24 23 45 45 H 1.07996 * 119.96789 * 180.02562 * 26 25 24 46 46 H 1.07996 * 120.03549 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.0640 -4.8197 0.0022 12 6 1.8290 -6.1447 0.0016 13 8 0.9004 -7.2309 0.0016 14 6 1.5150 -8.5209 0.0016 15 6 0.4320 -9.6018 0.0010 16 7 -0.3254 -9.5334 -1.2511 17 6 -1.3371 -10.3954 -1.4746 18 8 -1.6202 -11.2285 -0.6389 19 6 -2.1097 -10.3253 -2.7509 20 8 -1.8262 -9.4923 -3.5869 21 7 -3.1210 -11.1876 -2.9746 22 6 -3.7807 -11.1862 -4.2064 23 6 -4.2433 -12.3783 -4.7498 24 6 -4.8953 -12.3731 -5.9671 25 6 -5.0876 -11.1835 -6.6453 26 6 -4.6285 -9.9950 -6.1073 27 6 -3.9756 -9.9928 -4.8904 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0016 30 1 2.6855 -3.7141 0.8911 31 1 2.6842 -3.7149 -0.8888 32 1 0.4370 -4.7621 -0.8876 33 1 0.4377 -4.7618 0.8924 34 1 2.4562 -6.2024 0.8912 35 1 2.4551 -6.2024 -0.8888 36 1 2.1351 -8.6280 0.8916 37 1 2.1351 -8.6279 -0.8884 38 1 -0.2418 -9.4414 0.8426 39 1 0.8980 -10.5830 0.0906 40 1 -0.0993 -8.8672 -1.9190 41 1 -3.3909 -11.8092 -2.2806 42 1 -4.0892 -13.3083 -4.2228 43 1 -5.2548 -13.2995 -6.3903 44 1 -5.5975 -11.1824 -7.5974 45 1 -4.7807 -9.0676 -6.6394 46 1 -3.6169 -9.0645 -4.4711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755553666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:12 Heat of formation + Delta-G solvation = -75.521670 kcal Electronic energy + Delta-G solvation = -26764.689558 eV Core-core repulsion = 22654.960959 eV Total energy + Delta-G solvation = -4109.728599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42189 -39.82188 -38.57279 -38.17755 -35.90312 -35.25393 -34.68225 -32.36113 -31.30723 -30.51378 -30.10424 -29.15013 -25.72266 -24.99537 -23.38002 -22.93703 -22.53553 -22.06520 -20.86950 -20.69718 -19.21417 -17.96077 -17.21207 -17.04138 -16.96083 -16.62917 -16.29664 -16.17458 -15.65001 -15.17364 -14.88722 -14.60979 -14.39354 -14.29023 -14.21064 -13.75997 -13.73833 -13.34035 -13.17101 -13.05707 -12.95092 -12.40410 -12.24516 -11.80909 -11.78881 -11.63685 -11.33860 -10.90416 -10.83238 -10.77057 -10.71361 -10.60512 -10.08258 -10.01605 -9.70592 -9.68247 -9.62121 -9.31364 -8.86526 -8.63526 -6.92277 -5.75269 -3.04706 0.61995 1.01765 1.22368 1.88740 2.76778 3.15371 3.42458 3.45027 3.45441 3.49632 3.51019 4.01102 4.50227 4.51911 4.57003 4.62172 4.78913 4.78990 5.01525 5.04374 5.08952 5.14828 5.16735 5.23757 5.33019 5.46708 5.57069 5.57531 5.62406 5.79546 5.82635 5.88758 5.94482 6.05793 6.06989 6.17520 6.25632 6.35770 6.50162 6.62483 6.80978 6.85747 6.91119 7.10532 7.29734 7.54374 7.69655 8.43418 9.54212 10.12069 10.46770 11.47571 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.001713 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.291933 B =16338.248238 C =18349.585864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.157 3.843 11 C -0.125 4.125 12 C 0.068 3.932 13 O -0.387 6.387 14 C 0.047 3.953 15 C 0.121 3.879 16 N -0.687 5.687 17 C 0.511 3.489 18 O -0.522 6.522 19 C 0.508 3.492 20 O -0.493 6.493 21 N -0.646 5.646 22 C 0.137 3.863 23 C -0.140 4.140 24 C -0.103 4.103 25 C -0.132 4.132 26 C -0.101 4.101 27 C -0.118 4.118 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.419 0.581 41 H 0.423 0.577 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.301 -30.926 -8.344 32.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.029 3.971 11 C -0.163 4.163 12 C -0.008 4.008 13 O -0.307 6.307 14 C -0.031 4.031 15 C -0.002 4.002 16 N -0.341 5.341 17 C 0.290 3.710 18 O -0.399 6.399 19 C 0.290 3.710 20 O -0.366 6.366 21 N -0.293 5.293 22 C 0.044 3.956 23 C -0.160 4.160 24 C -0.122 4.122 25 C -0.150 4.150 26 C -0.120 4.120 27 C -0.138 4.138 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.256 0.744 41 H 0.261 0.739 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.285 -30.741 -8.272 32.449 hybrid contribution 0.460 0.900 0.067 1.013 sum -5.826 -29.841 -8.205 31.492 Atomic orbital electron populations 1.69658 1.05132 1.25820 1.57544 1.24768 0.95557 0.97761 1.02940 0.86234 0.78489 0.83415 0.77838 1.21247 1.21647 1.21244 1.19191 0.91025 0.84145 1.43004 0.91184 1.42326 1.05960 0.99889 1.89544 1.20509 0.93291 0.85474 0.97837 1.21677 0.99453 0.91779 1.03400 1.22522 0.91775 0.86360 1.00163 1.87930 1.33985 1.13260 1.95486 1.22717 0.94759 0.83826 1.01761 1.21600 0.93931 0.98393 0.86307 1.45716 1.32297 1.34789 1.21289 1.19787 0.81713 0.82497 0.86968 1.90784 1.67036 1.36170 1.45861 1.20312 0.80976 0.81833 0.87886 1.90811 1.66341 1.34006 1.45483 1.43099 1.32559 1.38289 1.15342 1.17759 0.96822 0.94342 0.86714 1.20939 1.01999 0.96198 0.96888 1.20959 0.98522 0.98421 0.94292 1.21223 1.00793 0.92648 1.00352 1.21138 0.97039 0.98553 0.95224 1.21380 0.98722 0.97697 0.96024 0.93414 0.78168 0.96328 0.96327 0.91119 0.91144 0.93137 0.93165 0.91111 0.92388 0.89638 0.89274 0.74380 0.73912 0.85474 0.85505 0.85792 0.85371 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -19.16 5.60 -59.91 -0.34 -19.50 16 10 C 0.16 3.18 6.26 -4.04 -0.03 3.16 16 11 C -0.13 -2.09 5.70 -26.73 -0.15 -2.24 16 12 C 0.07 0.88 5.94 37.16 0.22 1.10 16 13 O -0.39 -4.73 10.29 -35.23 -0.36 -5.09 16 14 C 0.05 0.38 6.07 37.16 0.23 0.61 16 15 C 0.12 0.98 6.06 -4.04 -0.02 0.96 16 16 N -0.69 -6.47 5.50 -60.76 -0.33 -6.81 16 17 C 0.51 5.28 7.89 -11.63 -0.09 5.19 16 18 O -0.52 -6.13 16.48 5.49 0.09 -6.04 16 19 C 0.51 5.27 7.73 -11.63 -0.09 5.18 16 20 O -0.49 -6.16 13.91 5.48 0.08 -6.09 16 21 N -0.65 -5.52 5.32 -10.29 -0.05 -5.57 16 22 C 0.14 1.23 6.30 -83.74 -0.53 0.71 16 23 C -0.14 -0.99 9.97 -39.38 -0.39 -1.38 16 24 C -0.10 -0.66 10.04 -39.62 -0.40 -1.06 16 25 C -0.13 -0.90 10.04 -39.54 -0.40 -1.30 16 26 C -0.10 -0.82 10.04 -39.61 -0.40 -1.22 16 27 C -0.12 -1.17 8.70 -39.37 -0.34 -1.51 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.38 10.57 7.67 -40.82 -0.31 10.26 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.42 3.95 7.94 -40.82 -0.32 3.63 16 41 H 0.42 2.80 8.30 -40.82 -0.34 2.46 16 42 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 44 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.14 1.57 6.22 -52.49 -0.33 1.25 16 LS Contribution 397.17 15.07 5.99 5.99 Total: -1.00 -34.64 397.17 -8.64 -43.28 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -6.77 Total: 9.67 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -2.64 Total: 0.58 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.00 Total: -59.91 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.20 Total: -17.22 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.64 -8.64 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755553666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.241 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds