Wall clock time and date at job start Tue Mar 31 2020 18:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99706 * 2 1 4 4 H 1.48502 * 109.46506 * 239.99635 * 3 2 1 5 5 H 1.48500 * 109.47133 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47377 * 119.99621 * 3 2 1 7 7 C 1.38810 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99740 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00276 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00092 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47279 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47433 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47288 * 180.02562 * 12 11 10 14 14 C 1.42893 * 113.99978 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47023 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47258 * 65.00132 * 15 14 13 17 17 C 1.34773 * 119.99894 * 180.02562 * 16 15 14 18 18 O 1.21358 * 120.00137 * 359.97438 * 17 16 15 19 19 C 1.49359 * 119.99889 * 179.97438 * 17 16 15 20 20 O 1.21372 * 119.99795 * 0.02562 * 19 17 16 21 21 N 1.34773 * 119.99889 * 179.97438 * 19 17 16 22 22 C 1.39729 * 119.99927 * 184.62357 * 21 19 17 23 23 C 1.38935 * 120.07620 * 144.90305 * 22 21 19 24 24 C 1.38092 * 119.91934 * 179.97438 * 23 22 21 25 25 C 1.38284 * 120.08141 * 0.02562 * 24 23 22 26 26 C 1.38299 * 120.15416 * 359.97438 * 25 24 23 27 27 C 1.38105 * 120.07290 * 0.02562 * 26 25 24 28 28 H 0.96995 * 119.99860 * 0.02562 * 1 2 3 29 29 H 0.97006 * 119.99883 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.47242 * 60.00321 * 10 9 7 31 31 H 1.09001 * 109.47640 * 300.00267 * 10 9 7 32 32 H 1.09008 * 109.46763 * 59.99878 * 11 10 9 33 33 H 1.08995 * 109.47325 * 300.00218 * 11 10 9 34 34 H 1.08998 * 109.46505 * 60.00254 * 12 11 10 35 35 H 1.08995 * 109.47239 * 300.00511 * 12 11 10 36 36 H 1.09002 * 109.47258 * 60.00389 * 14 13 12 37 37 H 1.09000 * 109.47104 * 299.99940 * 14 13 12 38 38 H 1.09003 * 109.47122 * 304.99639 * 15 14 13 39 39 H 1.09000 * 109.46905 * 185.00270 * 15 14 13 40 40 H 0.97004 * 119.99951 * 359.97438 * 16 15 14 41 41 H 0.96996 * 120.00261 * 4.62428 * 21 19 17 42 42 H 1.08001 * 120.03532 * 359.70558 * 23 22 21 43 43 H 1.08007 * 119.95818 * 179.97438 * 24 23 22 44 44 H 1.08005 * 119.92873 * 179.97438 * 25 24 23 45 45 H 1.07996 * 119.96789 * 180.02562 * 26 25 24 46 46 H 1.07996 * 120.03549 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0582 -3.6567 0.0016 11 6 1.0640 -4.8197 0.0022 12 6 1.8290 -6.1447 0.0016 13 8 0.9004 -7.2309 0.0016 14 6 1.5150 -8.5209 0.0016 15 6 0.4320 -9.6018 0.0010 16 7 -0.3254 -9.5334 -1.2511 17 6 -1.3371 -10.3954 -1.4746 18 8 -1.6202 -11.2285 -0.6389 19 6 -2.1097 -10.3253 -2.7509 20 8 -1.8262 -9.4923 -3.5869 21 7 -3.1210 -11.1876 -2.9746 22 6 -3.7807 -11.1862 -4.2064 23 6 -4.2433 -12.3783 -4.7498 24 6 -4.8953 -12.3731 -5.9671 25 6 -5.0876 -11.1835 -6.6453 26 6 -4.6285 -9.9950 -6.1073 27 6 -3.9756 -9.9928 -4.8904 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0016 30 1 2.6855 -3.7141 0.8911 31 1 2.6842 -3.7149 -0.8888 32 1 0.4370 -4.7621 -0.8876 33 1 0.4377 -4.7618 0.8924 34 1 2.4562 -6.2024 0.8912 35 1 2.4551 -6.2024 -0.8888 36 1 2.1351 -8.6280 0.8916 37 1 2.1351 -8.6279 -0.8884 38 1 -0.2418 -9.4414 0.8426 39 1 0.8980 -10.5830 0.0906 40 1 -0.0993 -8.8672 -1.9190 41 1 -3.3909 -11.8092 -2.2806 42 1 -4.0892 -13.3083 -4.2228 43 1 -5.2548 -13.2995 -6.3903 44 1 -5.5975 -11.1824 -7.5974 45 1 -4.7807 -9.0676 -6.6394 46 1 -3.6169 -9.0645 -4.4711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755553666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:11 Heat of formation + Delta-G solvation = -101.135063 kcal Electronic energy + Delta-G solvation = -26765.800238 eV Core-core repulsion = 22654.960959 eV Total energy + Delta-G solvation = -4110.839280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.18923 -40.53751 -39.33423 -39.05460 -37.10843 -36.47001 -35.59747 -34.12936 -31.90074 -31.82695 -30.90765 -30.27846 -26.92628 -26.26900 -24.31396 -23.99294 -23.55593 -22.75638 -22.31876 -21.46441 -19.96675 -19.14926 -18.63641 -17.95396 -17.83481 -17.37611 -17.15434 -16.88110 -16.68268 -16.49566 -15.87949 -15.69627 -15.41242 -15.30552 -15.10252 -15.03202 -14.84848 -14.52579 -14.32751 -13.96469 -13.76054 -13.36024 -13.15921 -13.10653 -12.76940 -12.64294 -12.45366 -12.44201 -12.24447 -12.10380 -12.01969 -11.95814 -11.75947 -11.50104 -10.94287 -10.83710 -10.55246 -10.38456 -9.90395 -9.27060 -9.03690 -7.96712 -5.27155 -0.10574 0.43109 0.53111 1.15951 1.46898 1.50966 1.57158 1.96849 2.43280 2.51899 2.65990 2.83870 3.25455 3.36723 3.79125 3.96471 4.02125 4.03425 4.07848 4.17962 4.29032 4.34814 4.41020 4.45986 4.50499 4.51011 4.55039 4.59781 4.72374 4.74008 4.78494 4.83728 5.07232 5.08397 5.22342 5.25895 5.31501 5.32734 5.47488 5.48810 5.59419 5.79355 6.02977 6.17919 6.21815 6.26473 6.56978 6.76540 7.30677 8.06288 8.29026 9.26954 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011992 B = 0.001713 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.291933 B =16338.248238 C =18349.585864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.980 3.020 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.252 4.252 8 H 0.080 0.920 9 N -0.751 5.751 10 C 0.155 3.845 11 C -0.115 4.115 12 C 0.078 3.922 13 O -0.409 6.409 14 C 0.045 3.955 15 C 0.120 3.880 16 N -0.685 5.685 17 C 0.513 3.487 18 O -0.538 6.538 19 C 0.506 3.494 20 O -0.521 6.521 21 N -0.634 5.634 22 C 0.116 3.884 23 C -0.138 4.138 24 C -0.102 4.102 25 C -0.131 4.131 26 C -0.114 4.114 27 C -0.143 4.143 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.419 0.581 41 H 0.431 0.569 42 H 0.150 0.850 43 H 0.157 0.843 44 H 0.149 0.851 45 H 0.136 0.864 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 -32.817 -8.809 34.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.383 4.383 8 H 0.098 0.902 9 N -0.393 5.393 10 C 0.028 3.972 11 C -0.153 4.153 12 C 0.002 3.998 13 O -0.329 6.329 14 C -0.031 4.031 15 C -0.002 4.002 16 N -0.337 5.337 17 C 0.293 3.707 18 O -0.416 6.416 19 C 0.288 3.712 20 O -0.397 6.397 21 N -0.281 5.281 22 C 0.023 3.977 23 C -0.158 4.158 24 C -0.120 4.120 25 C -0.150 4.150 26 C -0.132 4.132 27 C -0.163 4.163 28 H 0.061 0.939 29 H 0.204 0.796 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.256 0.744 41 H 0.271 0.729 42 H 0.168 0.832 43 H 0.175 0.825 44 H 0.166 0.834 45 H 0.154 0.846 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.192 -32.687 -8.727 34.228 hybrid contribution 0.103 1.365 0.177 1.380 sum -5.089 -31.322 -8.550 32.864 Atomic orbital electron populations 1.69833 1.06802 1.26302 1.59284 1.25680 0.96479 1.01472 1.03461 0.85123 0.77131 0.78623 0.78338 1.20189 1.22137 1.20099 1.19663 0.91692 0.85290 1.41673 0.90245 1.42604 1.05706 1.01420 1.89598 1.20678 0.93835 0.84431 0.98232 1.21492 0.98652 0.93045 1.02141 1.22309 0.91142 0.84697 1.01670 1.87884 1.34752 1.14553 1.95749 1.22934 0.94881 0.81710 1.03597 1.21732 0.93739 0.99519 0.85230 1.45816 1.31991 1.34267 1.21663 1.19763 0.81801 0.82451 0.86709 1.90770 1.67617 1.36931 1.46284 1.20389 0.81281 0.81815 0.87671 1.90800 1.67317 1.35215 1.46325 1.43044 1.31752 1.37712 1.15631 1.17972 0.97788 0.94937 0.86990 1.21249 1.01130 0.96217 0.97239 1.21379 0.97427 0.99474 0.93752 1.21562 1.00051 0.92179 1.01165 1.21331 0.97177 0.99849 0.94849 1.21350 1.00326 0.97387 0.97286 0.93926 0.79595 0.95423 0.95547 0.92477 0.92366 0.91518 0.91704 0.88912 0.90768 0.90678 0.87158 0.74419 0.72901 0.83189 0.82499 0.83370 0.84590 0.86434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.04 13.06 21.65 0.28 -60.75 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.98 46.63 29.55 68.60 2.03 48.65 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.75 -39.65 5.60 -343.46 -1.92 -41.57 16 10 C 0.15 6.19 6.26 86.38 0.54 6.73 16 11 C -0.12 -3.82 5.70 30.59 0.17 -3.64 16 12 C 0.08 1.87 5.94 71.98 0.43 2.30 16 13 O -0.41 -9.42 10.29 -148.98 -1.53 -10.95 16 14 C 0.05 0.64 6.07 71.98 0.44 1.08 16 15 C 0.12 1.79 6.06 86.38 0.52 2.31 16 16 N -0.68 -12.64 5.50 -464.51 -2.55 -15.19 16 17 C 0.51 10.65 7.89 87.24 0.69 11.34 16 18 O -0.54 -12.49 16.48 -3.27 -0.05 -12.54 16 19 C 0.51 10.91 7.73 87.24 0.67 11.59 16 20 O -0.52 -13.80 13.91 -3.31 -0.05 -13.85 16 21 N -0.63 -11.04 5.32 -304.83 -1.62 -12.66 16 22 C 0.12 2.10 6.30 38.21 0.24 2.34 16 23 C -0.14 -1.75 9.97 22.40 0.22 -1.52 16 24 C -0.10 -1.06 10.04 22.25 0.22 -0.84 16 25 C -0.13 -1.58 10.04 22.30 0.22 -1.35 16 26 C -0.11 -1.87 10.04 22.25 0.22 -1.64 16 27 C -0.14 -3.00 8.70 22.40 0.19 -2.80 16 28 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 29 H 0.37 21.08 7.67 -92.70 -0.71 20.37 16 30 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.42 7.88 7.94 -92.71 -0.74 7.14 16 41 H 0.43 5.66 8.30 -92.71 -0.77 4.89 16 42 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 44 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 46 H 0.12 2.94 6.22 -2.91 -0.02 2.92 16 Total: -1.00 -75.54 397.17 -0.52 -76.06 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: -1.20 Total: 34.65 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.10 Total: 8.16 kcal Atomic # 7 Polarization: -124.36 SS G_CDS: -5.82 Total: -130.18 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.63 Total: -37.34 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -75.54 -0.52 -76.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755553666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.075 kcal (2) G-P(sol) polarization free energy of solvation -75.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds