Wall clock time and date at job start Tue Mar 31 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48491 * 109.47078 * 269.99853 * 3 2 1 5 5 H 1.48496 * 109.46891 * 30.00219 * 3 2 1 6 6 H 1.48503 * 109.46859 * 149.99785 * 3 2 1 7 7 C 1.38657 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00238 * 359.97438 * 7 2 1 9 9 O 1.34833 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.35748 * 116.99987 * 185.08068 * 9 7 2 11 11 C 1.38902 * 120.07072 * 354.76081 * 10 9 7 12 12 C 1.38073 * 119.92815 * 180.25323 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.47507 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47566 * 90.00210 * 15 14 13 17 17 C 1.34775 * 120.00359 * 179.97438 * 16 15 14 18 18 O 1.21581 * 119.99888 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00256 * 179.97438 * 17 16 15 20 20 C 1.46498 * 120.00432 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47264 * 180.02562 * 20 19 17 22 22 H 1.08994 * 109.50684 * 64.91638 * 21 20 19 23 23 C 1.53104 * 109.50252 * 185.00007 * 21 20 19 24 24 O 1.43018 * 109.25471 * 176.78558 * 23 21 20 25 25 C 1.43016 * 113.73647 * 301.32860 * 24 23 21 26 26 C 1.53096 * 109.25977 * 58.67242 * 25 24 23 27 27 N 1.47010 * 109.25712 * 303.14889 * 26 25 24 28 28 C 1.38124 * 120.06675 * 359.97438 * 14 13 12 29 29 H 0.97001 * 120.00167 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03332 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96595 * 179.74524 * 12 11 10 32 32 H 1.08001 * 119.93142 * 180.29665 * 13 12 11 33 33 H 1.08999 * 109.47018 * 210.00112 * 15 14 13 34 34 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 35 35 H 0.97000 * 119.99676 * 359.97438 * 16 15 14 36 36 H 0.97000 * 119.99779 * 359.97438 * 19 17 16 37 37 H 1.08994 * 109.47258 * 300.00540 * 20 19 17 38 38 H 1.09004 * 109.46676 * 60.00152 * 20 19 17 39 39 H 1.08995 * 109.50526 * 296.71824 * 23 21 20 40 40 H 1.08998 * 109.50849 * 56.85110 * 23 21 20 41 41 H 1.09000 * 109.50662 * 178.60577 * 25 24 23 42 42 H 1.08999 * 109.50751 * 298.69331 * 25 24 23 43 43 H 1.09003 * 109.50589 * 63.08332 * 26 25 24 44 44 H 1.08996 * 109.50832 * 183.21386 * 26 25 24 45 45 H 1.00899 * 111.00629 * 294.83792 * 27 26 25 46 46 H 1.07996 * 120.03660 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3571 -1.2008 0.0011 10 6 3.9735 -2.4056 -0.1055 11 6 3.2229 -3.5743 -0.0993 12 6 3.8532 -4.7984 -0.2026 13 6 5.2297 -4.8612 -0.3232 14 6 5.9794 -3.6993 -0.3351 15 6 7.4787 -3.7722 -0.4672 16 7 7.8466 -3.7336 -1.8847 17 6 9.1439 -3.7861 -2.2460 18 8 10.0090 -3.8659 -1.3955 19 7 9.4823 -3.7511 -3.5501 20 6 10.8924 -3.8087 -3.9429 21 6 10.9998 -3.7521 -5.4681 22 1 10.6400 -2.7863 -5.8227 23 6 12.4613 -3.9375 -5.8848 24 8 12.5457 -3.9588 -7.3123 25 6 11.7669 -4.9933 -7.9196 26 6 10.2985 -4.8186 -7.5235 27 7 10.1875 -4.8263 -6.0576 28 6 5.3552 -2.4719 -0.2270 29 1 -0.4850 0.8400 0.0004 30 1 2.1477 -3.5258 -0.0091 31 1 3.2705 -5.7077 -0.1937 32 1 5.7201 -5.8196 -0.4087 33 1 7.9305 -2.9249 0.0485 34 1 7.8379 -4.7009 -0.0238 35 1 7.1563 -3.6702 -2.5633 36 1 8.7920 -3.6885 -4.2287 37 1 11.4251 -2.9621 -3.5098 38 1 11.3325 -4.7382 -3.5815 39 1 13.0578 -3.1117 -5.4973 40 1 12.8376 -4.8786 -5.4839 41 1 11.8613 -4.9310 -9.0038 42 1 12.1235 -5.9651 -7.5785 43 1 9.9271 -3.8701 -7.9116 44 1 9.7100 -5.6374 -7.9373 45 1 10.4476 -5.7251 -5.6799 46 1 5.9411 -1.5647 -0.2367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771821345.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:41 Heat of formation + Delta-G solvation = -70.340390 kcal Electronic energy + Delta-G solvation = -27639.385555 eV Core-core repulsion = 23529.881633 eV Total energy + Delta-G solvation = -4109.503922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43942 -39.77903 -39.18414 -37.05811 -36.03174 -34.48506 -34.13516 -32.44722 -32.10685 -30.67105 -29.39344 -27.53303 -26.32533 -25.46295 -24.85089 -23.02788 -21.83636 -21.56850 -20.88035 -20.68426 -18.58129 -17.76704 -17.33442 -16.86582 -16.69029 -16.18328 -16.08801 -15.73182 -15.41983 -15.24002 -15.20569 -14.78809 -14.32971 -14.15485 -13.99051 -13.82084 -13.52348 -13.36848 -12.99422 -12.84402 -12.55302 -12.52504 -12.19003 -12.02232 -11.84724 -11.76893 -11.59266 -11.45664 -10.92978 -10.84642 -10.78832 -10.73853 -10.24060 -10.19799 -9.46312 -9.31711 -8.93258 -8.86091 -8.76792 -8.33471 -7.47789 -6.46488 -4.13777 1.78802 2.15585 2.77213 3.19120 3.22845 3.24020 3.25624 3.37606 3.52503 4.07086 4.19664 4.30834 4.33801 4.42034 4.51713 4.53873 4.64545 4.67678 4.79607 4.98597 5.03823 5.06225 5.13151 5.17308 5.32210 5.41150 5.44253 5.50266 5.67710 5.76447 5.86725 6.01703 6.15708 6.21827 6.38294 6.43079 6.50533 6.54136 6.68443 6.70389 6.94356 7.01751 7.12854 7.20960 7.50183 7.73163 7.97412 8.05058 8.62408 8.88485 9.49753 10.60898 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.001998 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.378270 B =14008.792719 C =14678.070519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.107 0.893 9 O -0.216 6.216 10 C 0.156 3.844 11 C -0.212 4.212 12 C -0.078 4.078 13 C -0.185 4.185 14 C -0.074 4.074 15 C 0.187 3.813 16 N -0.736 5.736 17 C 0.703 3.297 18 O -0.600 6.600 19 N -0.739 5.739 20 C 0.150 3.850 21 C 0.038 3.962 22 H 0.100 0.900 23 C 0.030 3.970 24 O -0.378 6.378 25 C 0.019 3.981 26 C 0.022 3.978 27 N -0.677 5.677 28 C -0.171 4.171 29 H 0.280 0.720 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.399 0.601 36 H 0.404 0.596 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.051 0.949 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.344 0.656 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.011 -10.755 -13.730 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.103 3.897 11 C -0.231 4.231 12 C -0.096 4.096 13 C -0.204 4.204 14 C -0.075 4.075 15 C 0.064 3.936 16 N -0.391 5.391 17 C 0.403 3.597 18 O -0.479 6.479 19 N -0.395 5.395 20 C 0.025 3.975 21 C -0.072 4.072 22 H 0.118 0.882 23 C -0.049 4.049 24 O -0.296 6.296 25 C -0.060 4.060 26 C -0.108 4.108 27 N -0.307 5.307 28 C -0.190 4.190 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.240 0.760 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.123 0.877 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.163 0.837 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 21.203 -9.951 -12.990 26.783 hybrid contribution 0.081 0.120 -0.646 0.662 sum 21.285 -9.831 -13.636 27.122 Atomic orbital electron populations 1.69639 1.05574 1.28572 1.47749 1.24470 0.95032 0.98870 0.95598 0.86182 0.80365 0.81398 0.78978 1.19877 1.20744 1.18322 1.20758 0.76812 0.96640 1.52414 0.87599 1.83578 1.22661 1.25585 1.80264 1.19071 0.91570 0.85636 0.93375 1.21363 1.01267 0.91930 1.08567 1.20805 0.94177 0.96817 0.97849 1.20558 0.93816 0.96804 1.09265 1.19284 0.93480 0.92944 1.01788 1.19979 0.90863 1.02367 0.80401 1.45229 1.05650 1.79259 1.08988 1.15946 0.83157 0.77921 0.82717 1.90909 1.48718 1.58321 1.49964 1.44866 1.08367 1.80364 1.05950 1.21019 0.82486 1.02521 0.91523 1.22520 0.92636 0.97429 0.94635 0.88198 1.23190 0.96765 1.02999 0.81924 1.88103 1.68641 1.53800 1.19026 1.23332 0.92412 0.90797 0.99450 1.22683 0.95400 1.04264 0.88451 1.60821 1.57067 1.07684 1.05125 1.20092 0.91940 0.97263 1.09750 0.90988 0.84855 0.86999 0.87278 0.91092 0.91093 0.76650 0.76042 0.90788 0.91729 0.87736 0.92605 0.88185 0.93055 0.89622 0.89234 0.83743 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.91 13.96 55.48 0.77 -24.14 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.34 28.62 -169.99 -4.86 16.48 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.39 -10.74 9.95 30.89 0.31 -10.43 16 8 H 0.11 2.96 5.43 -52.49 -0.29 2.68 16 9 O -0.22 -5.53 8.59 0.05 0.00 -5.53 16 10 C 0.16 3.44 6.65 -39.10 -0.26 3.18 16 11 C -0.21 -4.34 9.17 -39.40 -0.36 -4.70 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.72 16 13 C -0.18 -2.87 9.70 -39.53 -0.38 -3.26 16 14 C -0.07 -1.18 5.25 -104.65 -0.55 -1.73 16 15 C 0.19 2.62 5.80 -5.20 -0.03 2.59 16 16 N -0.74 -9.25 5.55 -66.42 -0.37 -9.62 16 17 C 0.70 9.33 8.57 -86.92 -0.74 8.59 16 18 O -0.60 -10.23 16.34 5.29 0.09 -10.14 16 19 N -0.74 -7.08 5.40 -65.23 -0.35 -7.43 16 20 C 0.15 1.19 5.30 -4.04 -0.02 1.16 16 21 C 0.04 0.23 2.79 -67.60 -0.19 0.05 16 22 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 23 C 0.03 0.18 6.29 37.21 0.23 0.41 16 24 O -0.38 -2.91 10.83 -35.23 -0.38 -3.29 16 25 C 0.02 0.10 7.00 37.21 0.26 0.36 16 26 C 0.02 0.11 6.76 -3.71 -0.03 0.08 16 27 N -0.68 -3.88 6.04 -106.46 -0.64 -4.52 16 28 C -0.17 -3.20 9.65 -39.39 -0.38 -3.58 16 29 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 35 H 0.40 4.46 8.48 -40.82 -0.35 4.12 16 36 H 0.40 3.33 8.16 -40.82 -0.33 3.00 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.34 1.84 8.79 -39.29 -0.35 1.49 16 46 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -31.85 383.46 -9.26 -41.11 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.65 Total: 8.64 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.64 Total: -7.33 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.59 Total: -45.71 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.29 Total: -18.96 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.85 -9.26 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771821345.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.235 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds