Wall clock time and date at job start Tue Mar 31 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86804 * 119.99890 * 2 1 4 4 H 1.48491 * 109.47078 * 269.99853 * 3 2 1 5 5 H 1.48496 * 109.46891 * 30.00219 * 3 2 1 6 6 H 1.48503 * 109.46859 * 149.99785 * 3 2 1 7 7 C 1.38657 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00238 * 359.97438 * 7 2 1 9 9 O 1.34833 * 120.00180 * 180.02562 * 7 2 1 10 10 C 1.35748 * 116.99987 * 185.08068 * 9 7 2 11 11 C 1.38902 * 120.07072 * 354.76081 * 10 9 7 12 12 C 1.38073 * 119.92815 * 180.25323 * 11 10 9 13 13 C 1.38325 * 120.07033 * 359.47507 * 12 11 10 14 14 C 1.38278 * 120.14043 * 0.27011 * 13 12 11 15 15 C 1.50692 * 119.96641 * 180.02562 * 14 13 12 16 16 N 1.46496 * 109.47566 * 90.00210 * 15 14 13 17 17 C 1.34775 * 120.00359 * 179.97438 * 16 15 14 18 18 O 1.21581 * 119.99888 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00256 * 179.97438 * 17 16 15 20 20 C 1.46498 * 120.00432 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.47264 * 180.02562 * 20 19 17 22 22 H 1.08994 * 109.50684 * 64.91638 * 21 20 19 23 23 C 1.53104 * 109.50252 * 185.00007 * 21 20 19 24 24 O 1.43018 * 109.25471 * 176.78558 * 23 21 20 25 25 C 1.43016 * 113.73647 * 301.32860 * 24 23 21 26 26 C 1.53096 * 109.25977 * 58.67242 * 25 24 23 27 27 N 1.47010 * 109.25712 * 303.14889 * 26 25 24 28 28 C 1.38124 * 120.06675 * 359.97438 * 14 13 12 29 29 H 0.97001 * 120.00167 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.03332 * 359.97438 * 11 10 9 31 31 H 1.08000 * 119.96595 * 179.74524 * 12 11 10 32 32 H 1.08001 * 119.93142 * 180.29665 * 13 12 11 33 33 H 1.08999 * 109.47018 * 210.00112 * 15 14 13 34 34 H 1.09005 * 109.47290 * 329.99934 * 15 14 13 35 35 H 0.97000 * 119.99676 * 359.97438 * 16 15 14 36 36 H 0.97000 * 119.99779 * 359.97438 * 19 17 16 37 37 H 1.08994 * 109.47258 * 300.00540 * 20 19 17 38 38 H 1.09004 * 109.46676 * 60.00152 * 20 19 17 39 39 H 1.08995 * 109.50526 * 296.71824 * 23 21 20 40 40 H 1.08998 * 109.50849 * 56.85110 * 23 21 20 41 41 H 1.09000 * 109.50662 * 178.60577 * 25 24 23 42 42 H 1.08999 * 109.50751 * 298.69331 * 25 24 23 43 43 H 1.09003 * 109.50589 * 63.08332 * 26 25 24 44 44 H 1.08996 * 109.50832 * 183.21386 * 26 25 24 45 45 H 1.00899 * 111.00629 * 294.83792 * 27 26 25 46 46 H 1.07996 * 120.03660 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4000 5 1 1.4469 2.6526 0.7001 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3571 -1.2008 0.0011 10 6 3.9735 -2.4056 -0.1055 11 6 3.2229 -3.5743 -0.0993 12 6 3.8532 -4.7984 -0.2026 13 6 5.2297 -4.8612 -0.3232 14 6 5.9794 -3.6993 -0.3351 15 6 7.4787 -3.7722 -0.4672 16 7 7.8466 -3.7336 -1.8847 17 6 9.1439 -3.7861 -2.2460 18 8 10.0090 -3.8659 -1.3955 19 7 9.4823 -3.7511 -3.5501 20 6 10.8924 -3.8087 -3.9429 21 6 10.9998 -3.7521 -5.4681 22 1 10.6400 -2.7863 -5.8227 23 6 12.4613 -3.9375 -5.8848 24 8 12.5457 -3.9588 -7.3123 25 6 11.7669 -4.9933 -7.9196 26 6 10.2985 -4.8186 -7.5235 27 7 10.1875 -4.8263 -6.0576 28 6 5.3552 -2.4719 -0.2270 29 1 -0.4850 0.8400 0.0004 30 1 2.1477 -3.5258 -0.0091 31 1 3.2705 -5.7077 -0.1937 32 1 5.7201 -5.8196 -0.4087 33 1 7.9305 -2.9249 0.0485 34 1 7.8379 -4.7009 -0.0238 35 1 7.1563 -3.6702 -2.5633 36 1 8.7920 -3.6885 -4.2287 37 1 11.4251 -2.9621 -3.5098 38 1 11.3325 -4.7382 -3.5815 39 1 13.0578 -3.1117 -5.4973 40 1 12.8376 -4.8786 -5.4839 41 1 11.8613 -4.9310 -9.0038 42 1 12.1235 -5.9651 -7.5785 43 1 9.9271 -3.8701 -7.9116 44 1 9.7100 -5.6374 -7.9373 45 1 10.4476 -5.7251 -5.6799 46 1 5.9411 -1.5647 -0.2367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771821345.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:41 Heat of formation + Delta-G solvation = -95.432913 kcal Electronic energy + Delta-G solvation = -27640.473648 eV Core-core repulsion = 23529.881633 eV Total energy + Delta-G solvation = -4110.592016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26734 -40.87658 -40.40224 -38.61014 -36.75280 -35.66708 -34.80944 -34.44586 -32.82546 -31.88987 -30.93202 -28.20890 -27.39741 -26.92387 -25.93446 -23.57831 -23.29409 -22.28741 -22.08084 -21.80783 -19.82247 -19.45340 -18.76480 -17.70340 -17.21515 -16.96053 -16.88014 -16.77231 -16.59501 -16.29824 -16.00748 -15.83176 -15.70699 -15.65762 -15.35306 -14.88965 -14.72671 -14.50653 -14.22566 -14.06035 -13.80012 -13.53150 -13.35173 -13.10778 -13.09522 -12.56704 -12.46295 -12.36039 -12.32421 -12.23789 -12.09373 -11.93623 -11.41647 -11.29400 -11.18038 -10.91246 -10.34030 -9.79228 -9.70781 -9.29750 -9.11257 -8.49695 -6.22252 0.35196 0.66067 1.32022 1.35056 1.51877 1.82091 2.20626 2.27808 2.75051 2.82193 2.99121 3.06654 3.12375 3.43776 3.75706 3.78258 3.83082 3.96060 4.07972 4.13757 4.19726 4.29729 4.38182 4.44092 4.47672 4.51566 4.63913 4.67327 4.70315 4.76537 4.79147 4.92139 4.95153 5.03859 5.20480 5.37868 5.46800 5.53306 5.64837 5.70547 5.75721 5.82176 5.90060 6.03818 6.09095 6.20765 6.28917 6.84871 7.13136 7.59104 7.62276 8.61623 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.001998 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.378270 B =14008.792719 C =14678.070519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.397 4.397 8 H 0.084 0.916 9 O -0.245 6.245 10 C 0.118 3.882 11 C -0.227 4.227 12 C -0.074 4.074 13 C -0.157 4.157 14 C -0.059 4.059 15 C 0.194 3.806 16 N -0.731 5.731 17 C 0.701 3.299 18 O -0.638 6.638 19 N -0.724 5.724 20 C 0.151 3.849 21 C 0.052 3.948 22 H 0.093 0.907 23 C 0.030 3.970 24 O -0.400 6.400 25 C 0.016 3.984 26 C 0.025 3.975 27 N -0.681 5.681 28 C -0.169 4.169 29 H 0.284 0.716 30 H 0.110 0.890 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.408 0.592 36 H 0.413 0.587 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.104 0.896 45 H 0.348 0.652 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.390 -12.418 -14.789 30.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.189 1.189 7 C -0.474 4.474 8 H 0.101 0.899 9 O -0.153 6.153 10 C 0.069 3.931 11 C -0.247 4.247 12 C -0.092 4.092 13 C -0.176 4.176 14 C -0.060 4.060 15 C 0.070 3.930 16 N -0.386 5.386 17 C 0.401 3.599 18 O -0.520 6.520 19 N -0.380 5.380 20 C 0.026 3.974 21 C -0.059 4.059 22 H 0.111 0.889 23 C -0.049 4.049 24 O -0.319 6.319 25 C -0.062 4.062 26 C -0.104 4.104 27 N -0.312 5.312 28 C -0.189 4.189 29 H 0.094 0.906 30 H 0.128 0.872 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.243 0.757 36 H 0.250 0.750 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.127 0.873 40 H 0.082 0.918 41 H 0.127 0.873 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.122 0.878 45 H 0.167 0.833 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 23.597 -11.654 -14.097 29.856 hybrid contribution -0.446 0.311 -0.377 0.662 sum 23.151 -11.343 -14.474 29.566 Atomic orbital electron populations 1.69720 1.06824 1.29544 1.50158 1.25247 0.95858 1.02058 0.95657 0.85249 0.78771 0.77655 0.79251 1.19057 1.19366 1.18887 1.20701 0.78036 0.96123 1.52496 0.89870 1.83523 1.21269 1.27418 1.83101 1.19587 0.92943 0.85248 0.95305 1.21397 1.00381 0.93268 1.09632 1.21143 0.95217 0.96393 0.96456 1.21037 0.93099 0.98253 1.05208 1.19468 0.94615 0.91959 0.99955 1.19856 0.88972 1.02817 0.81324 1.45049 1.05813 1.79165 1.08588 1.16058 0.82766 0.77728 0.83356 1.90889 1.49709 1.60146 1.51265 1.44790 1.09390 1.78957 1.04874 1.21080 0.81335 1.02289 0.92666 1.22317 0.92984 0.97362 0.93214 0.88853 1.23226 0.96565 1.03662 0.81406 1.88074 1.69270 1.54791 1.19784 1.23459 0.92224 0.90573 0.99953 1.22677 0.95465 1.04402 0.87862 1.60817 1.56936 1.07737 1.05680 1.20280 0.90564 0.98862 1.09186 0.90608 0.87207 0.83815 0.83316 0.91713 0.89878 0.75664 0.75028 0.91297 0.91758 0.87279 0.91849 0.87278 0.92274 0.90457 0.87802 0.83303 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.39 13.96 21.61 0.30 -54.09 16 2 C 0.01 0.59 5.49 84.84 0.47 1.06 16 3 Si 0.97 45.08 28.62 68.60 1.96 47.04 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.40 -22.93 9.95 67.92 0.68 -22.25 16 8 H 0.08 5.00 5.43 -2.91 -0.02 4.98 16 9 O -0.25 -13.03 8.59 -22.75 -0.20 -13.22 16 10 C 0.12 5.29 6.65 22.58 0.15 5.44 16 11 C -0.23 -9.39 9.17 22.39 0.21 -9.19 16 12 C -0.07 -2.31 10.04 22.25 0.22 -2.09 16 13 C -0.16 -4.20 9.70 22.30 0.22 -3.98 16 14 C -0.06 -1.70 5.25 -19.88 -0.10 -1.80 16 15 C 0.19 4.82 5.80 85.63 0.50 5.32 16 16 N -0.73 -16.20 5.55 -482.33 -2.68 -18.88 16 17 C 0.70 16.98 8.57 179.06 1.53 18.52 16 18 O -0.64 -20.56 16.34 -3.97 -0.06 -20.62 16 19 N -0.72 -12.26 5.40 -478.55 -2.58 -14.84 16 20 C 0.15 2.12 5.30 86.38 0.46 2.58 16 21 C 0.05 0.55 2.79 44.93 0.13 0.67 16 22 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 23 C 0.03 0.31 6.29 72.02 0.45 0.77 16 24 O -0.40 -5.58 10.83 -148.98 -1.61 -7.20 16 25 C 0.02 0.14 7.00 72.01 0.50 0.64 16 26 C 0.03 0.20 6.76 86.31 0.58 0.78 16 27 N -0.68 -6.33 6.04 -490.72 -2.96 -9.29 16 28 C -0.17 -6.16 9.65 22.39 0.22 -5.95 16 29 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.11 5.03 5.64 -2.91 -0.02 5.02 16 31 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 32 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 34 H 0.08 1.94 8.09 -2.38 -0.02 1.92 16 35 H 0.41 7.80 8.48 -92.71 -0.79 7.02 16 36 H 0.41 5.75 8.16 -92.71 -0.76 4.99 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.35 2.86 8.79 -89.69 -0.79 2.07 16 46 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -71.46 383.46 -2.93 -74.39 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: -1.30 Total: 26.21 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 6.20 Total: -9.50 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -7.92 Total: -97.10 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.87 Total: -41.04 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.96 Total: 47.04 kcal Total: -71.46 -2.93 -74.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771821345.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.043 kcal (2) G-P(sol) polarization free energy of solvation -71.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds