Wall clock time and date at job start Tue Mar 31 2020 18:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34514 * 125.79203 * 2 1 4 4 C 1.41383 * 106.84009 * 179.97438 * 3 2 1 5 5 C 1.34513 * 106.84380 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.79259 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46991 * 89.99529 * 6 5 4 8 8 O 1.21278 * 120.00513 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99663 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00111 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47304 * 180.02562 * 10 9 7 12 12 H 1.09005 * 112.79163 * 75.80829 * 11 10 9 13 13 C 1.53515 * 113.47547 * 206.61754 * 11 10 9 14 14 C 1.53515 * 83.57623 * 140.79154 * 13 11 10 15 15 N 1.47480 * 113.47694 * 304.99859 * 11 10 9 16 16 C 1.46898 * 111.00405 * 106.53094 * 15 11 10 17 17 C 1.50700 * 109.47325 * 187.49822 * 16 15 11 18 18 O 1.21292 * 119.99927 * 0.02562 * 17 16 15 19 19 N 1.34769 * 119.99972 * 179.97438 * 17 16 15 20 20 C 1.37105 * 120.00178 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99575 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99933 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00569 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99698 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47255 * 89.99576 * 24 22 20 26 26 H 1.48500 * 109.46992 * 209.99780 * 24 22 20 27 27 H 1.48501 * 109.46925 * 329.99458 * 24 22 20 28 28 O 1.34304 * 108.41766 * 0.26468 * 5 4 3 29 29 H 1.09004 * 109.47384 * 89.99699 * 1 2 3 30 30 H 1.09002 * 109.47621 * 209.99812 * 1 2 3 31 31 H 1.08999 * 109.47319 * 330.00400 * 1 2 3 32 32 H 1.07999 * 126.57684 * 359.94230 * 3 2 1 33 33 H 1.08002 * 126.57763 * 179.97438 * 4 3 2 34 34 H 1.09009 * 109.46810 * 329.99811 * 6 5 4 35 35 H 1.09000 * 109.47286 * 209.99864 * 6 5 4 36 36 H 0.97005 * 120.00357 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47044 * 59.99446 * 10 9 7 38 38 H 1.09000 * 109.46789 * 300.00092 * 10 9 7 39 39 H 1.08994 * 114.17159 * 27.14259 * 13 11 10 40 40 H 1.09004 * 114.34450 * 254.44427 * 13 11 10 41 41 H 1.09005 * 113.47774 * 219.21143 * 14 13 11 42 42 H 1.08997 * 113.53532 * 88.75298 * 14 13 11 43 43 H 1.09002 * 109.46877 * 307.49737 * 16 15 11 44 44 H 1.08994 * 109.47113 * 67.49979 * 16 15 11 45 45 H 0.97001 * 120.00327 * 0.02562 * 19 17 16 46 46 H 0.97002 * 120.00264 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6319 0.0006 5 6 3.5813 -0.7123 0.0015 6 6 4.7705 -1.6380 0.0030 7 6 5.1659 -1.9455 1.4243 8 8 4.5433 -1.4611 2.3454 9 7 6.2117 -2.7589 1.6717 10 6 6.5959 -3.0583 3.0534 11 6 7.8040 -3.9970 3.0548 12 1 8.7355 -3.4868 2.8094 13 6 7.8985 -4.8702 4.3139 14 6 8.3454 -5.9521 3.3207 15 7 7.5888 -5.2326 2.2790 16 6 8.3365 -5.1976 1.0150 17 6 7.9511 -6.3846 0.1702 18 8 7.1337 -7.1812 0.5806 19 7 8.5140 -6.5604 -1.0416 20 6 8.1631 -7.6401 -1.8103 21 1 7.4358 -8.3498 -1.4446 22 6 8.7438 -7.8216 -3.0595 23 7 9.6290 -6.9583 -3.5043 24 14 8.2651 -9.2922 -4.1072 25 1 7.1125 -8.9305 -4.9708 26 1 9.4156 -9.6895 -4.9578 27 1 7.8866 -10.4258 -3.2256 28 8 2.2923 -1.0895 -0.0044 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9665 2.1204 -0.0009 33 1 4.5212 1.2432 0.0004 34 1 5.6042 -1.1592 -0.5107 35 1 4.5108 -2.5639 -0.5104 36 1 6.7100 -3.1461 0.9350 37 1 5.7622 -3.5376 3.5666 38 1 6.8549 -2.1325 3.5672 39 1 6.9392 -5.0710 4.7908 40 1 8.6727 -4.5626 5.0170 41 1 7.9435 -6.9402 3.5450 42 1 9.4211 -5.9645 3.1456 43 1 8.1008 -4.2782 0.4788 44 1 9.4056 -5.2323 1.2241 45 1 9.1675 -5.9232 -1.3700 46 1 10.0342 -7.0849 -4.3765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733217624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:28 Heat of formation + Delta-G solvation = -19.394823 kcal Electronic energy + Delta-G solvation = -28334.875210 eV Core-core repulsion = 24227.580453 eV Total energy + Delta-G solvation = -4107.294757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.63504 -40.54119 -39.29512 -37.80136 -34.55398 -33.94566 -33.24007 -33.10341 -31.44010 -30.81068 -30.25766 -28.17214 -25.88152 -25.16999 -23.80843 -23.05356 -21.84621 -20.82853 -20.14722 -19.67855 -19.33528 -17.95697 -17.46624 -16.88900 -16.19288 -16.05139 -15.96451 -15.58025 -15.35447 -15.04009 -14.58145 -14.34525 -14.13012 -13.94056 -13.74813 -13.58499 -13.36778 -13.09372 -12.89224 -12.85543 -12.68326 -12.48297 -12.27871 -11.97610 -11.67450 -11.64175 -11.56935 -11.36766 -11.11024 -10.91696 -10.58408 -10.42451 -10.25346 -9.97664 -9.86008 -9.54201 -9.06448 -8.87158 -8.32536 -8.27165 -8.00756 -6.45990 -3.86819 1.62379 2.51609 2.60626 2.77241 3.14910 3.23937 3.24613 3.29946 3.82550 3.90195 4.18668 4.38975 4.41727 4.69555 4.73621 4.80539 4.93855 4.96711 4.97414 5.00530 5.14650 5.22680 5.24880 5.26770 5.28315 5.33977 5.40752 5.50625 5.57036 5.61866 5.72463 5.75468 5.84392 5.89484 5.92427 6.09426 6.13675 6.18971 6.34750 6.48659 6.51465 7.11096 7.13089 7.45258 7.51398 8.01504 8.18319 8.57139 9.14386 9.49349 10.01551 10.71713 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.002850 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.774695 B = 9823.383871 C =12199.173609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.014 4.014 3 C -0.213 4.213 4 C -0.196 4.196 5 C 0.011 3.989 6 C -0.066 4.066 7 C 0.516 3.484 8 O -0.536 6.536 9 N -0.720 5.720 10 C 0.142 3.858 11 C 0.004 3.996 12 H 0.083 0.917 13 C -0.134 4.134 14 C 0.005 3.995 15 N -0.433 5.433 16 C 0.007 3.993 17 C 0.444 3.556 18 O -0.572 6.572 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 O -0.169 6.169 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.403 0.597 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 15.368 8.728 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.232 4.232 4 C -0.215 4.215 5 C -0.040 4.040 6 C -0.105 4.105 7 C 0.302 3.698 8 O -0.413 6.413 9 N -0.372 5.372 10 C 0.018 3.982 11 C -0.107 4.107 12 H 0.101 0.899 13 C -0.172 4.172 14 C -0.123 4.123 15 N -0.156 5.156 16 C -0.125 4.125 17 C 0.229 3.771 18 O -0.455 6.455 19 N -0.203 5.203 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 O -0.066 6.066 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.224 0.776 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.518 14.645 9.264 18.889 hybrid contribution 1.598 -0.058 -1.226 2.015 sum -5.920 14.587 8.038 17.676 Atomic orbital electron populations 1.20287 0.85256 1.04010 1.03362 1.22396 0.93957 0.84176 1.05902 1.21495 0.92668 0.99217 1.09792 1.21459 0.98205 0.93600 1.08231 1.21409 0.82615 0.93759 1.06198 1.20126 0.93766 1.00662 0.95982 1.20328 0.80007 0.78645 0.90866 1.90721 1.52607 1.51774 1.46170 1.45897 1.32817 1.49032 1.09480 1.21311 0.96421 0.97575 0.82877 1.23784 0.97582 0.93257 0.96037 0.89920 1.23158 1.02821 0.95932 0.95260 1.23738 0.97205 0.99808 0.91598 1.68871 1.42216 1.04847 0.99637 1.22570 0.97062 0.99387 0.93484 1.19605 0.85993 0.88162 0.83329 1.90546 1.36011 1.46502 1.72432 1.41874 1.38719 1.25029 1.14691 1.19687 1.22922 1.02720 0.97452 0.87962 1.25239 0.96257 0.98857 0.97511 1.69600 1.28143 1.36310 1.20346 0.85874 0.77935 0.81095 0.79514 1.20357 1.20926 1.19426 1.83945 1.16222 1.35085 1.71316 0.90192 0.90538 0.89465 0.83642 0.83647 0.85761 0.86579 0.76158 0.90756 0.91257 0.88569 0.90417 0.89136 0.91368 0.90149 0.92077 0.77599 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.42 36.00 0.37 -0.20 16 2 C -0.01 -0.17 7.32 -35.63 -0.26 -0.43 16 3 C -0.21 -2.49 10.81 -39.70 -0.43 -2.91 16 4 C -0.20 -2.44 10.81 -39.70 -0.43 -2.87 16 5 C 0.01 0.15 5.81 -35.63 -0.21 -0.06 16 6 C -0.07 -0.76 6.23 -29.04 -0.18 -0.94 16 7 C 0.52 7.20 7.82 -10.99 -0.09 7.11 16 8 O -0.54 -9.43 16.03 5.56 0.09 -9.34 16 9 N -0.72 -9.01 5.46 -60.30 -0.33 -9.34 16 10 C 0.14 1.70 5.81 -4.04 -0.02 1.67 16 11 C 0.00 0.04 3.25 -71.43 -0.23 -0.19 16 12 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 13 C -0.13 -1.35 8.00 -26.20 -0.21 -1.56 16 14 C 0.01 0.07 7.69 -7.53 -0.06 0.01 16 15 N -0.43 -6.54 5.39 -237.92 -1.28 -7.83 16 16 C 0.01 0.12 5.04 -4.98 -0.03 0.09 16 17 C 0.44 10.03 7.83 -10.99 -0.09 9.95 16 18 O -0.57 -15.30 16.01 5.55 0.09 -15.21 16 19 N -0.57 -13.75 5.29 -10.96 -0.06 -13.81 16 20 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 21 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -23.91 13.05 55.50 0.72 -23.19 16 24 Si 0.93 20.74 29.55 -169.99 -5.02 15.71 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 O -0.17 -2.50 10.65 5.70 0.06 -2.44 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.12 1.03 8.14 -51.92 -0.42 0.60 16 35 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.40 4.74 6.20 -40.82 -0.25 4.49 16 37 H 0.07 1.00 7.88 -51.93 -0.41 0.60 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.99 7.94 -51.93 -0.41 0.58 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.07 0.83 7.44 -51.93 -0.39 0.44 16 43 H 0.08 1.10 6.25 -51.93 -0.32 0.77 16 44 H 0.06 0.87 7.35 -51.93 -0.38 0.49 16 45 H 0.39 8.99 7.90 -40.82 -0.32 8.67 16 46 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -35.55 390.36 -8.58 -44.12 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -6.64 Total: 13.52 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.09 Total: 1.90 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.95 Total: -54.16 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: 0.24 Total: -26.98 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.55 -8.58 -44.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733217624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.730 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds