Wall clock time and date at job start Tue Mar 31 2020 18:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34514 * 125.79203 * 2 1 4 4 C 1.41383 * 106.84009 * 179.97438 * 3 2 1 5 5 C 1.34513 * 106.84380 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.79259 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46991 * 89.99529 * 6 5 4 8 8 O 1.21278 * 120.00513 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99663 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00111 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47304 * 180.02562 * 10 9 7 12 12 H 1.09005 * 112.79163 * 75.80829 * 11 10 9 13 13 C 1.53515 * 113.47547 * 206.61754 * 11 10 9 14 14 C 1.53515 * 83.57623 * 140.79154 * 13 11 10 15 15 N 1.47480 * 113.47694 * 304.99859 * 11 10 9 16 16 C 1.46898 * 111.00405 * 106.53094 * 15 11 10 17 17 C 1.50700 * 109.47325 * 187.49822 * 16 15 11 18 18 O 1.21292 * 119.99927 * 0.02562 * 17 16 15 19 19 N 1.34769 * 119.99972 * 179.97438 * 17 16 15 20 20 C 1.37105 * 120.00178 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99575 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99933 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00569 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99698 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47255 * 89.99576 * 24 22 20 26 26 H 1.48500 * 109.46992 * 209.99780 * 24 22 20 27 27 H 1.48501 * 109.46925 * 329.99458 * 24 22 20 28 28 O 1.34304 * 108.41766 * 0.26468 * 5 4 3 29 29 H 1.09004 * 109.47384 * 89.99699 * 1 2 3 30 30 H 1.09002 * 109.47621 * 209.99812 * 1 2 3 31 31 H 1.08999 * 109.47319 * 330.00400 * 1 2 3 32 32 H 1.07999 * 126.57684 * 359.94230 * 3 2 1 33 33 H 1.08002 * 126.57763 * 179.97438 * 4 3 2 34 34 H 1.09009 * 109.46810 * 329.99811 * 6 5 4 35 35 H 1.09000 * 109.47286 * 209.99864 * 6 5 4 36 36 H 0.97005 * 120.00357 * 0.02562 * 9 7 6 37 37 H 1.08996 * 109.47044 * 59.99446 * 10 9 7 38 38 H 1.09000 * 109.46789 * 300.00092 * 10 9 7 39 39 H 1.08994 * 114.17159 * 27.14259 * 13 11 10 40 40 H 1.09004 * 114.34450 * 254.44427 * 13 11 10 41 41 H 1.09005 * 113.47774 * 219.21143 * 14 13 11 42 42 H 1.08997 * 113.53532 * 88.75298 * 14 13 11 43 43 H 1.09002 * 109.46877 * 307.49737 * 16 15 11 44 44 H 1.08994 * 109.47113 * 67.49979 * 16 15 11 45 45 H 0.97001 * 120.00327 * 0.02562 * 19 17 16 46 46 H 0.97002 * 120.00264 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6319 0.0006 5 6 3.5813 -0.7123 0.0015 6 6 4.7705 -1.6380 0.0030 7 6 5.1659 -1.9455 1.4243 8 8 4.5433 -1.4611 2.3454 9 7 6.2117 -2.7589 1.6717 10 6 6.5959 -3.0583 3.0534 11 6 7.8040 -3.9970 3.0548 12 1 8.7355 -3.4868 2.8094 13 6 7.8985 -4.8702 4.3139 14 6 8.3454 -5.9521 3.3207 15 7 7.5888 -5.2326 2.2790 16 6 8.3365 -5.1976 1.0150 17 6 7.9511 -6.3846 0.1702 18 8 7.1337 -7.1812 0.5806 19 7 8.5140 -6.5604 -1.0416 20 6 8.1631 -7.6401 -1.8103 21 1 7.4358 -8.3498 -1.4446 22 6 8.7438 -7.8216 -3.0595 23 7 9.6290 -6.9583 -3.5043 24 14 8.2651 -9.2922 -4.1072 25 1 7.1125 -8.9305 -4.9708 26 1 9.4156 -9.6895 -4.9578 27 1 7.8866 -10.4258 -3.2256 28 8 2.2923 -1.0895 -0.0044 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.9665 2.1204 -0.0009 33 1 4.5212 1.2432 0.0004 34 1 5.6042 -1.1592 -0.5107 35 1 4.5108 -2.5639 -0.5104 36 1 6.7100 -3.1461 0.9350 37 1 5.7622 -3.5376 3.5666 38 1 6.8549 -2.1325 3.5672 39 1 6.9392 -5.0710 4.7908 40 1 8.6727 -4.5626 5.0170 41 1 7.9435 -6.9402 3.5450 42 1 9.4211 -5.9645 3.1456 43 1 8.1008 -4.2782 0.4788 44 1 9.4056 -5.2323 1.2241 45 1 9.1675 -5.9232 -1.3700 46 1 10.0342 -7.0849 -4.3765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733217624.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:28 Heat of formation + Delta-G solvation = -46.834591 kcal Electronic energy + Delta-G solvation = -28336.065087 eV Core-core repulsion = 24227.580453 eV Total energy + Delta-G solvation = -4108.484634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.56540 -41.62068 -40.44021 -39.55351 -35.94969 -35.59851 -34.18799 -33.95909 -33.31299 -32.09368 -31.14615 -29.12361 -27.53744 -26.02342 -25.35699 -24.01257 -22.77958 -21.85700 -21.11032 -21.05611 -20.61812 -19.90451 -18.47914 -17.91061 -17.64155 -17.19891 -16.99026 -16.74857 -16.49926 -16.35221 -16.27176 -15.59886 -15.36765 -15.20392 -15.03486 -14.59029 -14.37257 -14.11547 -13.94814 -13.75468 -13.74247 -13.58542 -13.53002 -13.18822 -12.96739 -12.89083 -12.61674 -12.53629 -12.43273 -12.34510 -12.14462 -11.95019 -11.63985 -11.48671 -11.06726 -10.80466 -10.36579 -10.11333 -9.99371 -9.71143 -9.22456 -8.46165 -5.93994 0.69028 1.37284 1.41672 1.53222 1.53709 1.62337 1.90990 2.07058 2.26034 2.31400 2.82192 3.20191 3.35340 3.53905 3.56487 3.79968 3.82286 3.97071 4.08427 4.12423 4.17355 4.21896 4.28548 4.35215 4.39805 4.41278 4.52363 4.56962 4.66079 4.69245 4.83830 4.84135 4.87543 4.91458 5.00733 5.05395 5.21558 5.27458 5.30608 5.41970 5.48713 5.65139 5.93824 6.12449 6.21348 6.43500 6.62550 7.14278 7.15140 7.58799 8.15970 8.70988 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.002850 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.774695 B = 9823.383871 C =12199.173609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.030 4.030 3 C -0.223 4.223 4 C -0.201 4.201 5 C -0.019 4.019 6 C -0.062 4.062 7 C 0.514 3.486 8 O -0.578 6.578 9 N -0.713 5.713 10 C 0.141 3.859 11 C 0.017 3.983 12 H 0.113 0.887 13 C -0.115 4.115 14 C -0.003 4.003 15 N -0.470 5.470 16 C 0.021 3.979 17 C 0.442 3.558 18 O -0.620 6.620 19 N -0.574 5.574 20 C -0.331 4.331 21 H 0.074 0.926 22 C -0.009 4.009 23 N -0.918 5.918 24 Si 0.987 3.013 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.276 1.276 28 O -0.199 6.199 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.117 0.883 36 H 0.407 0.593 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.087 0.913 45 H 0.397 0.603 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 17.062 8.677 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.080 4.080 3 C -0.242 4.242 4 C -0.220 4.220 5 C -0.069 4.069 6 C -0.101 4.101 7 C 0.301 3.699 8 O -0.458 6.458 9 N -0.365 5.365 10 C 0.017 3.983 11 C -0.092 4.092 12 H 0.130 0.870 13 C -0.153 4.153 14 C -0.132 4.132 15 N -0.194 5.194 16 C -0.111 4.111 17 C 0.229 3.771 18 O -0.505 6.505 19 N -0.212 5.212 20 C -0.460 4.460 21 H 0.092 0.908 22 C -0.209 4.209 23 N -0.559 5.559 24 Si 0.811 3.189 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.201 1.201 28 O -0.097 6.097 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.189 0.811 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.135 0.865 36 H 0.244 0.756 37 H 0.071 0.929 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.102 0.898 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.460 16.352 9.205 19.846 hybrid contribution 1.240 -0.576 -1.153 1.788 sum -5.220 15.776 8.052 18.466 Atomic orbital electron populations 1.20478 0.82695 1.04987 1.04682 1.23254 0.95654 0.83858 1.05245 1.21897 0.92389 1.00394 1.09529 1.21842 0.99377 0.93515 1.07300 1.21857 0.82771 0.94772 1.07519 1.20233 0.94372 1.00889 0.94641 1.20733 0.79637 0.78108 0.91412 1.90695 1.53987 1.53538 1.47563 1.45902 1.32356 1.48264 1.09970 1.21371 0.96134 0.98275 0.82519 1.23835 0.98167 0.91833 0.95411 0.86965 1.23100 1.03463 0.93727 0.95036 1.23824 0.97755 0.99267 0.92355 1.68825 1.43163 1.07593 0.99772 1.22459 0.98514 0.96860 0.93275 1.20786 0.84268 0.89128 0.82891 1.90515 1.37900 1.48763 1.73359 1.41922 1.39271 1.24665 1.15336 1.19583 1.23708 1.03896 0.98859 0.90778 1.25923 0.95936 1.01137 0.97944 1.69646 1.28268 1.37194 1.20806 0.85020 0.78118 0.77895 0.77893 1.19729 1.19492 1.20083 1.83927 1.17109 1.36628 1.72021 0.88601 0.90776 0.87220 0.81124 0.81808 0.82374 0.86486 0.75612 0.92909 0.89746 0.89200 0.86999 0.91948 0.89829 0.87414 0.89515 0.76901 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.42 71.23 0.74 -0.33 16 2 C -0.03 -0.73 7.32 24.83 0.18 -0.55 16 3 C -0.22 -5.00 10.81 22.19 0.24 -4.76 16 4 C -0.20 -4.87 10.81 22.19 0.24 -4.63 16 5 C -0.02 -0.53 5.81 24.83 0.14 -0.38 16 6 C -0.06 -1.40 6.23 29.10 0.18 -1.22 16 7 C 0.51 14.12 7.82 87.66 0.69 14.81 16 8 O -0.58 -20.51 16.03 -3.02 -0.05 -20.56 16 9 N -0.71 -16.93 5.46 -463.08 -2.53 -19.46 16 10 C 0.14 3.14 5.81 86.38 0.50 3.64 16 11 C 0.02 0.33 3.25 42.19 0.14 0.47 16 12 H 0.11 1.61 7.91 -2.38 -0.02 1.59 16 13 C -0.12 -2.04 8.00 30.94 0.25 -1.79 16 14 C 0.00 -0.08 7.69 83.58 0.64 0.56 16 15 N -0.47 -13.57 5.39 -906.64 -4.89 -18.46 16 16 C 0.02 0.63 5.04 85.56 0.43 1.06 16 17 C 0.44 20.09 7.83 87.66 0.69 20.78 16 18 O -0.62 -34.18 16.01 -3.07 -0.05 -34.23 16 19 N -0.57 -28.15 5.29 -306.99 -1.62 -29.77 16 20 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 21 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 22 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 23 N -0.92 -48.06 13.05 21.66 0.28 -47.77 16 24 Si 0.99 42.43 29.55 68.60 2.03 44.45 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 27 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 28 O -0.20 -6.01 10.65 -2.53 -0.03 -6.04 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 33 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 34 H 0.16 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.41 8.83 6.20 -92.70 -0.57 8.26 16 37 H 0.05 1.41 7.88 -2.39 -0.02 1.39 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.73 7.94 -2.39 -0.02 1.71 16 40 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.08 1.82 7.44 -2.39 -0.02 1.80 16 43 H 0.11 2.64 6.25 -2.39 -0.01 2.63 16 44 H 0.09 2.21 7.35 -2.39 -0.02 2.19 16 45 H 0.40 18.16 7.90 -92.71 -0.73 17.43 16 46 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -80.28 390.36 -0.80 -81.08 By element: Atomic # 1 Polarization: 41.02 SS G_CDS: -0.29 Total: 40.73 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 6.34 Total: 10.03 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -8.76 Total: -115.46 kcal Atomic # 8 Polarization: -60.70 SS G_CDS: -0.12 Total: -60.82 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -80.28 -0.80 -81.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733217624.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.241 kcal (2) G-P(sol) polarization free energy of solvation -80.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds