Wall clock time and date at job start Tue Mar 31 2020 18:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35242 * 126.06704 * 2 1 4 4 C 1.40415 * 107.86404 * 179.97438 * 3 2 1 5 5 N 1.40158 * 125.96854 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00475 * 359.97438 * 5 4 3 7 7 O 1.21292 * 119.99450 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00247 * 179.97438 * 6 5 4 9 9 H 1.08996 * 110.53939 * 304.30341 * 8 6 5 10 10 O 1.45094 * 110.60221 * 181.46452 * 8 6 5 11 11 C 1.45046 * 109.41310 * 266.14144 * 10 8 6 12 12 C 1.52052 * 106.04808 * 3.40618 * 11 10 8 13 13 H 1.09000 * 109.88848 * 86.83005 * 12 11 10 14 14 C 1.51245 * 118.71882 * 214.99794 * 12 11 10 15 15 O 1.43974 * 106.43277 * 176.66521 * 14 12 11 16 16 C 1.42315 * 117.07873 * 302.64626 * 15 14 12 17 17 C 1.54007 * 112.18067 * 53.09736 * 16 15 14 18 18 C 1.51554 * 106.51017 * 305.89697 * 17 16 15 19 19 H 1.08999 * 111.20716 * 302.12482 * 18 17 16 20 20 N 1.31215 * 108.05511 * 0.02562 * 4 3 2 21 21 N 1.34967 * 126.07010 * 179.97438 * 2 1 3 22 22 C 1.46502 * 125.97717 * 0.07339 * 21 2 1 23 23 C 1.50703 * 109.46619 * 269.98051 * 22 21 2 24 24 H 1.07999 * 120.00039 * 0.02562 * 23 22 21 25 25 C 1.37880 * 119.99687 * 179.97438 * 23 22 21 26 26 N 1.31517 * 120.00062 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99615 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47231 * 60.00137 * 27 25 23 29 29 H 1.48502 * 109.46628 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47205 * 299.99704 * 27 25 23 31 31 H 1.08998 * 109.47722 * 90.02188 * 1 2 3 32 32 H 1.09004 * 109.47288 * 210.02670 * 1 2 3 33 33 H 1.09003 * 109.47409 * 330.02154 * 1 2 3 34 34 H 1.07998 * 126.06517 * 0.22601 * 3 2 1 35 35 H 0.97004 * 119.99864 * 180.02562 * 5 4 3 36 36 H 1.09000 * 110.11727 * 244.26598 * 11 10 8 37 37 H 1.08997 * 110.18728 * 122.59163 * 11 10 8 38 38 H 1.09004 * 110.05317 * 295.88966 * 14 12 11 39 39 H 1.08995 * 110.05624 * 57.43112 * 14 12 11 40 40 H 1.09001 * 108.93609 * 173.79035 * 16 15 14 41 41 H 1.08997 * 108.93485 * 292.49230 * 16 15 14 42 42 H 1.09002 * 110.04235 * 186.64977 * 17 16 15 43 43 H 1.09002 * 110.04671 * 65.14428 * 17 16 15 44 44 H 1.08996 * 109.47168 * 29.97706 * 22 21 2 45 45 H 1.08996 * 109.47525 * 149.98059 * 22 21 2 46 46 H 0.96993 * 119.99362 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7734 1.4750 0.0013 6 6 4.6366 2.8158 0.0009 7 8 3.5300 3.3125 0.0005 8 6 5.8585 3.6979 0.0023 9 1 6.5042 3.4555 0.8462 10 8 5.4777 5.0975 0.0363 11 6 5.4212 5.6149 -1.3176 12 6 5.7071 4.4335 -2.2312 13 1 4.7816 3.9000 -2.4480 14 6 6.4846 4.6724 -3.5063 15 8 6.6699 3.3823 -4.1181 16 6 7.3278 2.3863 -3.3432 17 6 6.6694 2.1934 -1.9644 18 6 6.6212 3.5619 -1.3148 19 1 7.6184 3.9942 -1.2317 20 7 3.6336 -0.6576 0.0004 21 7 2.3016 -1.0909 0.0005 22 6 1.8500 -2.4846 -0.0004 23 6 1.6942 -2.9630 1.4202 24 1 1.9096 -2.2955 2.2414 25 6 1.2757 -4.2525 1.6713 26 7 1.0130 -5.0652 0.6712 27 14 1.0819 -4.8452 3.4322 28 1 0.0806 -4.0004 4.1314 29 1 0.6243 -6.2579 3.4313 30 1 2.3872 -4.7487 4.1335 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3634 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 1.9718 2.1211 0.0034 35 1 5.6584 1.0778 0.0013 36 1 6.1775 6.3876 -1.4555 37 1 4.4303 6.0187 -1.5249 38 1 5.9192 5.3242 -4.1723 39 1 7.4517 5.1194 -3.2762 40 1 7.2989 1.4407 -3.8845 41 1 8.3676 2.6797 -3.1994 42 1 7.2662 1.5126 -1.3574 43 1 5.6595 1.8011 -2.0842 44 1 0.8918 -2.5557 -0.5149 45 1 2.5850 -3.1044 -0.5139 46 1 0.7182 -5.9721 0.8480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290522858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:36 Heat of formation + Delta-G solvation = -37.331568 kcal Electronic energy + Delta-G solvation = -29748.104297 eV Core-core repulsion = 25640.031745 eV Total energy + Delta-G solvation = -4108.072552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63511 -40.51730 -38.94413 -37.71133 -35.02926 -33.77094 -33.21761 -32.22278 -31.41118 -30.87412 -29.25482 -26.72425 -26.36939 -26.02871 -24.23365 -23.31002 -22.44112 -21.26423 -20.80429 -19.82703 -19.12180 -17.25952 -16.83935 -16.70111 -16.55950 -16.37207 -15.86680 -15.65727 -15.38234 -15.23494 -14.84190 -14.47336 -14.28434 -14.10575 -13.93836 -13.68361 -13.35448 -13.02908 -12.64389 -12.49261 -12.35316 -12.19335 -11.87759 -11.73911 -11.66587 -11.56713 -11.43120 -11.10092 -11.08137 -10.84161 -10.66082 -10.47461 -10.46234 -10.24129 -10.01499 -9.88177 -9.55568 -9.34124 -8.65978 -7.96831 -7.48981 -6.27471 -4.35404 2.22097 2.60147 2.85964 3.22090 3.25964 3.28914 3.30826 3.43928 3.58018 3.71653 3.79239 4.10861 4.25426 4.28528 4.50523 4.60680 4.76464 4.80297 4.82788 4.99139 5.01010 5.06085 5.17270 5.22961 5.26068 5.31201 5.42169 5.43259 5.59799 5.66664 5.68969 5.85276 5.91731 6.08056 6.20163 6.28293 6.44954 6.53942 6.70412 6.86191 6.90879 7.02470 7.39648 7.60177 7.65103 7.86627 8.02392 8.18688 8.61522 8.72589 9.31106 10.79748 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019504 B = 0.002714 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.248864 B =10313.821760 C =10695.819056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.290 4.290 4 C 0.262 3.738 5 N -0.628 5.628 6 C 0.503 3.497 7 O -0.498 6.498 8 C 0.079 3.921 9 H 0.128 0.872 10 O -0.349 6.349 11 C 0.064 3.936 12 C -0.171 4.171 13 H 0.098 0.902 14 C 0.084 3.916 15 O -0.385 6.385 16 C 0.069 3.931 17 C -0.158 4.158 18 C -0.124 4.124 19 H 0.104 0.896 20 N -0.319 5.319 21 N -0.316 5.316 22 C 0.259 3.741 23 C -0.538 4.538 24 H 0.064 0.936 25 C 0.066 3.934 26 N -0.892 5.892 27 Si 0.907 3.093 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.158 0.842 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.269 18.644 -7.100 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.321 4.321 4 C 0.009 3.991 5 N -0.279 5.279 6 C 0.287 3.713 7 O -0.370 6.370 8 C 0.017 3.983 9 H 0.146 0.854 10 O -0.266 6.266 11 C -0.013 4.013 12 C -0.189 4.189 13 H 0.116 0.884 14 C 0.008 3.992 15 O -0.304 6.304 16 C -0.008 4.008 17 C -0.195 4.195 18 C -0.142 4.142 19 H 0.122 0.878 20 N -0.150 5.150 21 N -0.098 5.098 22 C 0.141 3.859 23 C -0.576 4.576 24 H 0.082 0.918 25 C -0.137 4.137 26 N -0.529 5.529 27 Si 0.733 3.267 28 H -0.199 1.199 29 H -0.209 1.209 30 H -0.200 1.200 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.175 0.825 35 H 0.245 0.755 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.985 17.764 -7.153 22.592 hybrid contribution 0.038 -0.158 1.190 1.201 sum 12.024 17.607 -5.963 22.139 Atomic orbital electron populations 1.20381 0.87910 1.03908 1.02542 1.21063 0.94934 0.87128 1.00777 1.21242 0.89780 0.99768 1.21326 1.18983 0.87176 0.89592 1.03302 1.42645 1.07563 1.04964 1.72712 1.20983 0.91795 0.81714 0.76779 1.90666 1.26341 1.73701 1.46277 1.22437 0.92330 0.83498 0.99999 0.85434 1.89166 1.90701 1.20604 1.26146 1.22745 1.02343 0.95089 0.81077 1.23162 1.00565 0.98183 0.97028 0.88370 1.22212 0.98514 0.85389 0.93091 1.87813 1.79823 1.21019 1.41757 1.22541 0.94622 0.92083 0.91538 1.22323 1.04160 0.95799 0.97254 1.22649 1.00047 0.98360 0.93195 0.87793 1.77245 1.00009 1.08408 1.29332 1.48998 1.00939 1.07783 1.52092 1.19687 0.95978 0.71277 0.98923 1.21288 1.46996 0.97982 0.91365 0.91795 1.24927 0.94633 0.96047 0.98126 1.69910 1.44762 1.07178 1.31079 0.86409 0.78830 0.77692 0.83732 1.19907 1.20938 1.19986 0.91066 0.89870 0.90618 0.82468 0.75520 0.90718 0.89979 0.88116 0.92312 0.88290 0.93260 0.89493 0.89256 0.92801 0.92996 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 9.89 36.00 0.36 -1.18 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -5.98 9.52 -39.83 -0.38 -6.36 16 4 C 0.26 5.23 8.11 -154.39 -1.25 3.97 16 5 N -0.63 -9.37 4.00 -11.13 -0.04 -9.42 16 6 C 0.50 7.25 5.85 -10.99 -0.06 7.19 16 7 O -0.50 -9.04 13.70 -13.44 -0.18 -9.23 16 8 C 0.08 0.81 3.97 -27.98 -0.11 0.70 16 9 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 10 O -0.35 -4.13 10.80 -54.21 -0.59 -4.72 16 11 C 0.06 0.57 7.53 36.67 0.28 0.85 16 12 C -0.17 -1.50 2.23 -90.35 -0.20 -1.70 16 13 H 0.10 1.16 7.53 -51.93 -0.39 0.77 16 14 C 0.08 0.62 6.74 36.27 0.24 0.86 16 15 O -0.39 -3.77 10.63 -35.23 -0.37 -4.15 16 16 C 0.07 0.54 6.84 37.68 0.26 0.80 16 17 C -0.16 -1.28 4.26 -26.94 -0.11 -1.40 16 18 C -0.12 -0.98 2.43 -89.81 -0.22 -1.19 16 19 H 0.10 0.62 8.05 -51.93 -0.42 0.20 16 20 N -0.32 -7.23 12.59 31.44 0.40 -6.83 16 21 N -0.32 -7.43 3.59 -58.33 -0.21 -7.64 16 22 C 0.26 6.60 5.81 -5.19 -0.03 6.57 16 23 C -0.54 -14.74 9.39 -34.44 -0.32 -15.06 16 24 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 25 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 26 N -0.89 -24.91 13.29 55.43 0.74 -24.18 16 27 Si 0.91 21.02 29.54 -169.99 -5.02 16.00 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.16 3.20 5.92 -52.49 -0.31 2.89 16 35 H 0.41 4.83 7.29 -40.82 -0.30 4.53 16 36 H 0.07 0.49 8.10 -51.93 -0.42 0.06 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.33 8.06 -51.93 -0.42 -0.09 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.54 7.71 -51.93 -0.40 0.14 16 43 H 0.09 0.99 6.32 -51.93 -0.33 0.66 16 44 H 0.05 1.36 7.65 -51.93 -0.40 0.96 16 45 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -33.61 370.01 -8.65 -42.26 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.71 Total: 5.20 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.23 Total: -2.88 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.88 Total: -48.07 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -1.14 Total: -18.09 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.61 -8.65 -42.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290522858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.924 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds