Wall clock time and date at job start Tue Mar 31 2020 18:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35242 * 126.06704 * 2 1 4 4 C 1.40415 * 107.86404 * 179.97438 * 3 2 1 5 5 N 1.40158 * 125.96854 * 180.02562 * 4 3 2 6 6 C 1.34778 * 120.00475 * 359.97438 * 5 4 3 7 7 O 1.21292 * 119.99450 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00247 * 179.97438 * 6 5 4 9 9 H 1.08996 * 110.53939 * 304.30341 * 8 6 5 10 10 O 1.45094 * 110.60221 * 181.46452 * 8 6 5 11 11 C 1.45046 * 109.41310 * 266.14144 * 10 8 6 12 12 C 1.52052 * 106.04808 * 3.40618 * 11 10 8 13 13 H 1.09000 * 109.88848 * 86.83005 * 12 11 10 14 14 C 1.51245 * 118.71882 * 214.99794 * 12 11 10 15 15 O 1.43974 * 106.43277 * 176.66521 * 14 12 11 16 16 C 1.42315 * 117.07873 * 302.64626 * 15 14 12 17 17 C 1.54007 * 112.18067 * 53.09736 * 16 15 14 18 18 C 1.51554 * 106.51017 * 305.89697 * 17 16 15 19 19 H 1.08999 * 111.20716 * 302.12482 * 18 17 16 20 20 N 1.31215 * 108.05511 * 0.02562 * 4 3 2 21 21 N 1.34967 * 126.07010 * 179.97438 * 2 1 3 22 22 C 1.46502 * 125.97717 * 0.07339 * 21 2 1 23 23 C 1.50703 * 109.46619 * 269.98051 * 22 21 2 24 24 H 1.07999 * 120.00039 * 0.02562 * 23 22 21 25 25 C 1.37880 * 119.99687 * 179.97438 * 23 22 21 26 26 N 1.31517 * 120.00062 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99615 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47231 * 60.00137 * 27 25 23 29 29 H 1.48502 * 109.46628 * 180.02562 * 27 25 23 30 30 H 1.48494 * 109.47205 * 299.99704 * 27 25 23 31 31 H 1.08998 * 109.47722 * 90.02188 * 1 2 3 32 32 H 1.09004 * 109.47288 * 210.02670 * 1 2 3 33 33 H 1.09003 * 109.47409 * 330.02154 * 1 2 3 34 34 H 1.07998 * 126.06517 * 0.22601 * 3 2 1 35 35 H 0.97004 * 119.99864 * 180.02562 * 5 4 3 36 36 H 1.09000 * 110.11727 * 244.26598 * 11 10 8 37 37 H 1.08997 * 110.18728 * 122.59163 * 11 10 8 38 38 H 1.09004 * 110.05317 * 295.88966 * 14 12 11 39 39 H 1.08995 * 110.05624 * 57.43112 * 14 12 11 40 40 H 1.09001 * 108.93609 * 173.79035 * 16 15 14 41 41 H 1.08997 * 108.93485 * 292.49230 * 16 15 14 42 42 H 1.09002 * 110.04235 * 186.64977 * 17 16 15 43 43 H 1.09002 * 110.04671 * 65.14428 * 17 16 15 44 44 H 1.08996 * 109.47168 * 29.97706 * 22 21 2 45 45 H 1.08996 * 109.47525 * 149.98059 * 22 21 2 46 46 H 0.96993 * 119.99362 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 0.0006 5 7 4.7734 1.4750 0.0013 6 6 4.6366 2.8158 0.0009 7 8 3.5300 3.3125 0.0005 8 6 5.8585 3.6979 0.0023 9 1 6.5042 3.4555 0.8462 10 8 5.4777 5.0975 0.0363 11 6 5.4212 5.6149 -1.3176 12 6 5.7071 4.4335 -2.2312 13 1 4.7816 3.9000 -2.4480 14 6 6.4846 4.6724 -3.5063 15 8 6.6699 3.3823 -4.1181 16 6 7.3278 2.3863 -3.3432 17 6 6.6694 2.1934 -1.9644 18 6 6.6212 3.5619 -1.3148 19 1 7.6184 3.9942 -1.2317 20 7 3.6336 -0.6576 0.0004 21 7 2.3016 -1.0909 0.0005 22 6 1.8500 -2.4846 -0.0004 23 6 1.6942 -2.9630 1.4202 24 1 1.9096 -2.2955 2.2414 25 6 1.2757 -4.2525 1.6713 26 7 1.0130 -5.0652 0.6712 27 14 1.0819 -4.8452 3.4322 28 1 0.0806 -4.0004 4.1314 29 1 0.6243 -6.2579 3.4313 30 1 2.3872 -4.7487 4.1335 31 1 -0.3634 -0.0004 -1.0276 32 1 -0.3634 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 1.9718 2.1211 0.0034 35 1 5.6584 1.0778 0.0013 36 1 6.1775 6.3876 -1.4555 37 1 4.4303 6.0187 -1.5249 38 1 5.9192 5.3242 -4.1723 39 1 7.4517 5.1194 -3.2762 40 1 7.2989 1.4407 -3.8845 41 1 8.3676 2.6797 -3.1994 42 1 7.2662 1.5126 -1.3574 43 1 5.6595 1.8011 -2.0842 44 1 0.8918 -2.5557 -0.5149 45 1 2.5850 -3.1044 -0.5139 46 1 0.7182 -5.9721 0.8480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290522858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:35 Heat of formation + Delta-G solvation = -59.503353 kcal Electronic energy + Delta-G solvation = -29749.065738 eV Core-core repulsion = 25640.031745 eV Total energy + Delta-G solvation = -4109.033993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.65456 -41.94768 -40.02956 -38.54217 -36.43551 -35.44042 -34.33239 -33.17571 -32.76666 -32.55847 -30.15189 -28.53453 -27.91778 -26.74698 -25.40304 -24.60434 -23.59964 -22.22625 -21.70905 -21.30296 -20.53693 -18.82199 -18.25249 -17.85242 -17.65151 -17.27986 -17.08701 -16.68848 -16.40623 -16.34155 -16.15615 -15.90708 -15.51394 -15.22180 -14.96117 -14.66431 -14.48393 -14.33009 -14.00829 -13.86197 -13.67222 -13.60745 -13.28838 -13.17277 -12.89918 -12.69744 -12.59667 -12.44449 -12.33189 -12.24262 -12.07367 -11.71315 -11.60758 -11.40436 -11.36000 -11.17747 -10.75011 -10.63109 -10.45322 -9.62031 -9.18158 -8.34313 -6.52184 0.84114 1.23502 1.33726 1.38355 1.39026 1.48674 2.11914 2.19736 2.35735 2.64310 2.80813 2.94032 2.95531 3.36107 3.50557 3.58888 3.85788 3.99787 4.08879 4.10848 4.15515 4.24223 4.32566 4.39250 4.42461 4.61580 4.66381 4.69375 4.71391 4.71509 4.73953 4.79673 4.84432 4.93580 4.96478 4.99043 5.00446 5.08884 5.19434 5.21253 5.51748 5.55336 5.79047 5.88830 6.21084 6.22337 6.29571 6.59654 6.92373 7.05091 7.18892 8.71627 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019504 B = 0.002714 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.248864 B =10313.821760 C =10695.819056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.088 3.912 3 C -0.302 4.302 4 C 0.273 3.727 5 N -0.617 5.617 6 C 0.501 3.499 7 O -0.539 6.539 8 C 0.084 3.916 9 H 0.162 0.838 10 O -0.370 6.370 11 C 0.061 3.939 12 C -0.167 4.167 13 H 0.057 0.943 14 C 0.086 3.914 15 O -0.413 6.413 16 C 0.066 3.934 17 C -0.157 4.157 18 C -0.111 4.111 19 H 0.142 0.858 20 N -0.352 5.352 21 N -0.341 5.341 22 C 0.276 3.724 23 C -0.555 4.555 24 H 0.049 0.951 25 C 0.024 3.976 26 N -0.917 5.917 27 Si 0.971 3.029 28 H -0.266 1.266 29 H -0.272 1.272 30 H -0.275 1.275 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.424 0.576 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.026 0.974 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.230 20.100 -6.391 25.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C -0.333 4.333 4 C 0.019 3.981 5 N -0.269 5.269 6 C 0.288 3.712 7 O -0.414 6.414 8 C 0.023 3.977 9 H 0.179 0.821 10 O -0.288 6.288 11 C -0.015 4.015 12 C -0.186 4.186 13 H 0.075 0.925 14 C 0.010 3.990 15 O -0.332 6.332 16 C -0.010 4.010 17 C -0.195 4.195 18 C -0.130 4.130 19 H 0.160 0.840 20 N -0.183 5.183 21 N -0.123 5.123 22 C 0.157 3.843 23 C -0.593 4.593 24 H 0.067 0.933 25 C -0.177 4.177 26 N -0.555 5.555 27 Si 0.794 3.206 28 H -0.191 1.191 29 H -0.197 1.197 30 H -0.200 1.200 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.178 0.822 35 H 0.263 0.737 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.973 19.238 -6.458 24.639 hybrid contribution -0.566 -0.493 0.893 1.166 sum 13.407 18.746 -5.565 23.709 Atomic orbital electron populations 1.20496 0.85463 1.04355 1.04088 1.21714 0.96637 0.86492 0.99403 1.21393 0.90294 0.99689 1.21929 1.19321 0.88752 0.89258 1.00813 1.42769 1.06905 1.04908 1.72329 1.22049 0.92928 0.81416 0.74806 1.90635 1.28476 1.74247 1.48003 1.22638 0.90298 0.82047 1.02745 0.82068 1.89150 1.90818 1.21013 1.27801 1.22893 1.02892 0.95742 0.79988 1.23054 0.99331 0.97958 0.98215 0.92487 1.22359 0.99764 0.84709 0.92185 1.87776 1.80337 1.22199 1.42914 1.22641 0.95747 0.91802 0.90829 1.22309 1.02562 0.96406 0.98243 1.22712 1.01108 0.98084 0.91088 0.84008 1.77168 0.99955 1.09743 1.31407 1.48795 1.01773 1.07466 1.54306 1.19243 0.94901 0.72320 0.97795 1.21407 1.47779 0.98411 0.91746 0.93256 1.25726 0.93882 0.95890 1.02222 1.69993 1.44901 1.07598 1.33040 0.85418 0.78774 0.77688 0.78697 1.19119 1.19687 1.19984 0.88916 0.91283 0.88138 0.82204 0.73676 0.87276 0.91339 0.87524 0.89327 0.88763 0.90456 0.87153 0.92932 0.93147 0.95606 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.97 9.89 71.23 0.70 -2.26 16 2 C 0.09 3.80 6.92 41.38 0.29 4.09 16 3 C -0.30 -12.75 9.52 22.11 0.21 -12.54 16 4 C 0.27 11.12 8.11 133.33 1.08 12.20 16 5 N -0.62 -18.33 4.00 -307.51 -1.23 -19.56 16 6 C 0.50 14.27 5.85 87.66 0.51 14.78 16 7 O -0.54 -19.95 13.70 15.08 0.21 -19.75 16 8 C 0.08 1.53 3.97 29.78 0.12 1.65 16 9 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 10 O -0.37 -8.06 10.80 -130.83 -1.41 -9.47 16 11 C 0.06 0.98 7.53 71.67 0.54 1.52 16 12 C -0.17 -2.70 2.23 -10.62 -0.02 -2.72 16 13 H 0.06 1.40 7.53 -2.39 -0.02 1.38 16 14 C 0.09 1.06 6.74 71.41 0.48 1.54 16 15 O -0.41 -7.47 10.63 -148.98 -1.58 -9.05 16 16 C 0.07 0.90 6.84 72.32 0.49 1.39 16 17 C -0.16 -2.27 4.26 30.46 0.13 -2.14 16 18 C -0.11 -1.43 2.43 -10.27 -0.02 -1.46 16 19 H 0.14 0.90 8.05 -2.39 -0.02 0.88 16 20 N -0.35 -16.46 12.59 -54.45 -0.69 -17.15 16 21 N -0.34 -16.64 3.59 -338.45 -1.22 -17.86 16 22 C 0.28 14.67 5.81 85.63 0.50 15.17 16 23 C -0.56 -31.22 9.39 25.60 0.24 -30.98 16 24 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 25 C 0.02 1.31 5.46 84.65 0.46 1.78 16 26 N -0.92 -51.80 13.29 21.45 0.28 -51.52 16 27 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 30 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 31 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.07 2.58 7.71 -2.38 -0.02 2.56 16 33 H 0.10 2.92 8.14 -2.39 -0.02 2.91 16 34 H 0.16 6.67 5.92 -2.91 -0.02 6.65 16 35 H 0.42 9.65 7.29 -92.71 -0.68 8.97 16 36 H 0.11 1.03 8.10 -2.39 -0.02 1.01 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 0.60 8.06 -2.39 -0.02 0.58 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.11 1.05 7.71 -2.39 -0.02 1.03 16 43 H 0.05 1.17 6.32 -2.39 -0.02 1.15 16 44 H 0.05 2.66 7.65 -2.39 -0.02 2.64 16 45 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -75.92 370.01 2.43 -73.48 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.33 Total: 23.78 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 5.71 Total: 2.02 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -2.85 Total: -106.08 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -2.79 Total: -38.27 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -75.92 2.43 -73.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290522858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.980 kcal (2) G-P(sol) polarization free energy of solvation -75.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds