Wall clock time and date at job start Tue Mar 31 2020 18:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00096 * 2 1 4 4 O 1.20830 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00165 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47313 * 180.02562 * 5 3 2 7 7 C 1.36910 * 119.99798 * 264.75734 * 6 5 3 8 8 H 1.07997 * 119.99730 * 139.35647 * 7 6 5 9 9 C 1.39022 * 119.99889 * 319.35552 * 7 6 5 10 10 N 1.31384 * 119.99609 * 166.21153 * 9 7 6 11 11 Si 1.86793 * 120.00342 * 346.20869 * 9 7 6 12 12 H 1.48496 * 109.47425 * 91.45060 * 11 9 7 13 13 H 1.48494 * 109.47263 * 211.45303 * 11 9 7 14 14 H 1.48507 * 109.47083 * 331.45066 * 11 9 7 15 15 C 1.34777 * 119.99913 * 84.75899 * 6 5 3 16 16 O 1.21605 * 120.00148 * 4.99889 * 15 6 5 17 17 C 1.47608 * 119.99538 * 184.99996 * 15 6 5 18 18 C 1.41546 * 126.51826 * 174.24852 * 17 15 6 19 19 C 1.35355 * 105.49728 * 179.74126 * 18 17 15 20 20 C 1.50701 * 126.37479 * 180.21613 * 19 18 17 21 21 N 1.35044 * 107.24422 * 0.37143 * 19 18 17 22 22 C 1.46495 * 124.88139 * 179.87669 * 21 19 18 23 23 H 1.09003 * 109.47122 * 359.71485 * 22 21 19 24 24 C 1.53007 * 109.47113 * 239.71817 * 22 21 19 25 25 C 1.52989 * 109.47500 * 119.71887 * 22 21 19 26 26 C 1.53002 * 117.49949 * 248.62071 * 25 22 21 27 27 C 1.52993 * 60.00174 * 252.50932 * 26 25 22 28 28 N 1.28471 * 110.23921 * 359.60834 * 21 19 18 29 29 H 1.08999 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46832 * 299.99693 * 1 2 3 31 31 H 1.08998 * 109.47242 * 59.99829 * 1 2 3 32 32 H 1.09003 * 109.46651 * 59.99846 * 5 3 2 33 33 H 1.09005 * 109.47040 * 300.00499 * 5 3 2 34 34 H 0.96997 * 119.99767 * 180.02562 * 10 9 7 35 35 H 1.07999 * 127.25078 * 359.94947 * 18 17 15 36 36 H 1.08996 * 109.47480 * 270.17845 * 20 19 18 37 37 H 1.08998 * 109.47250 * 30.18524 * 20 19 18 38 38 H 1.09010 * 109.47028 * 150.18187 * 20 19 18 39 39 H 1.09001 * 109.47141 * 179.97438 * 24 22 21 40 40 H 1.08995 * 109.47039 * 300.00088 * 24 22 21 41 41 H 1.09001 * 109.46905 * 59.99619 * 24 22 21 42 42 H 1.09005 * 115.56615 * 34.30760 * 25 22 21 43 43 H 1.09001 * 117.50109 * 0.02562 * 26 25 22 44 44 H 1.09002 * 117.50181 * 145.02126 * 26 25 22 45 45 H 1.09004 * 117.49793 * 252.51076 * 27 26 25 46 46 H 1.09001 * 117.52422 * 107.48381 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2802 3.3057 -1.1794 8 1 3.9592 4.3231 -1.3473 9 6 4.9965 2.6316 -2.1619 10 7 5.0522 3.1150 -3.3823 11 14 5.8796 1.0388 -1.7470 12 1 4.9770 -0.1107 -2.0101 13 1 7.0973 0.9144 -2.5877 14 1 6.2665 1.0463 -0.3133 15 6 4.0702 3.3559 1.1636 16 8 3.8939 2.7772 2.2185 17 6 4.3809 4.7988 1.1562 18 6 4.3951 5.6631 2.2771 19 6 4.7364 6.8796 1.7914 20 6 4.8940 8.1484 2.5892 21 7 4.9061 6.7453 0.4584 22 6 5.2793 7.8305 -0.4521 23 1 5.3920 8.7560 0.1125 24 6 4.1872 8.0077 -1.5090 25 6 6.6026 7.4876 -1.1389 26 6 7.8286 8.3247 -0.7683 27 6 7.1654 8.5032 -2.1354 28 7 4.6986 5.5279 0.1045 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 3.9564 0.7805 -0.8892 33 1 3.9558 0.7808 0.8908 34 1 5.5516 2.6446 -4.0680 35 1 4.1821 5.4055 3.3040 36 1 3.9385 8.6710 2.6332 37 1 5.2214 7.9039 3.5997 38 1 5.6363 8.7881 2.1116 39 1 4.4646 8.8155 -2.1863 40 1 4.0744 7.0822 -2.0736 41 1 3.2443 8.2520 -1.0197 42 1 6.7612 6.4308 -1.3538 43 1 7.6924 9.1194 -0.0348 44 1 8.7936 7.8186 -0.7393 45 1 7.6940 8.1145 -3.0058 46 1 6.5925 9.4154 -2.3021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346774864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:59 Heat of formation + Delta-G solvation = 12.912475 kcal Electronic energy + Delta-G solvation = -30362.553516 eV Core-core repulsion = 26256.659709 eV Total energy + Delta-G solvation = -4105.893807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.02281 -39.94597 -38.42982 -37.70140 -35.85546 -34.81060 -33.22235 -32.25862 -31.90171 -29.68151 -28.69512 -26.83981 -26.30820 -25.13165 -24.28899 -22.48289 -22.25668 -20.79786 -20.38667 -19.71990 -18.50103 -17.60180 -17.21052 -16.60540 -16.29822 -15.82273 -15.49588 -15.24275 -14.99737 -14.73514 -14.57723 -13.86441 -13.82624 -13.50340 -13.18441 -12.99356 -12.86015 -12.74487 -12.69568 -12.46686 -12.33654 -12.05343 -11.97713 -11.81062 -11.69243 -11.50951 -11.42886 -10.99932 -10.88885 -10.47806 -10.39552 -10.32007 -10.18880 -10.01277 -9.83809 -9.51997 -9.28247 -8.79644 -8.34650 -8.23435 -7.82788 -6.36174 -4.00097 2.46386 2.70446 2.88206 2.95064 3.02479 3.20790 3.23944 3.28288 3.82382 4.11756 4.29005 4.42545 4.52248 4.82064 4.94193 4.97347 5.03641 5.07088 5.20777 5.32427 5.39570 5.41376 5.47334 5.48290 5.57682 5.60043 5.63972 5.70480 5.74579 5.81206 5.83781 5.90442 5.92087 5.99732 6.09554 6.16977 6.34504 6.37011 6.50107 6.54780 6.87234 7.15194 7.25606 7.45296 8.06957 8.40030 8.57799 8.72219 9.05445 9.36202 9.59780 10.73414 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.004560 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.729560 B = 6139.248367 C = 7288.931554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.489 6.489 5 C 0.105 3.895 6 N -0.440 5.440 7 C -0.317 4.317 8 H 0.135 0.865 9 C 0.063 3.937 10 N -0.860 5.860 11 Si 0.858 3.142 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.257 1.257 15 C 0.576 3.424 16 O -0.587 6.587 17 C 0.009 3.991 18 C -0.189 4.189 19 C -0.013 4.013 20 C -0.077 4.077 21 N -0.287 5.287 22 C 0.186 3.814 23 H 0.097 0.903 24 C -0.160 4.160 25 C -0.160 4.160 26 C -0.181 4.181 27 C -0.166 4.166 28 N -0.199 5.199 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.273 0.727 35 H 0.151 0.849 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.127 0.873 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 8.153 4.170 9.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.290 3.710 4 O -0.373 6.373 5 C -0.020 4.020 6 N -0.160 5.160 7 C -0.445 4.445 8 H 0.152 0.848 9 C -0.143 4.143 10 N -0.497 5.497 11 Si 0.685 3.315 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.181 1.181 15 C 0.365 3.635 16 O -0.470 6.470 17 C -0.151 4.151 18 C -0.217 4.217 19 C -0.136 4.136 20 C -0.135 4.135 21 N -0.076 5.076 22 C 0.085 3.915 23 H 0.115 0.885 24 C -0.218 4.218 25 C -0.179 4.179 26 C -0.218 4.218 27 C -0.204 4.204 28 N -0.033 5.033 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.168 0.832 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.855 8.210 3.257 8.873 hybrid contribution 0.140 -0.832 0.671 1.078 sum 0.996 7.377 3.928 8.417 Atomic orbital electron populations 1.23137 0.77565 1.02812 1.02259 1.86522 1.22650 1.34463 1.84942 1.24720 0.92777 0.81223 0.72272 1.90624 1.66563 1.36237 1.43909 1.21460 0.86957 0.88424 1.05141 1.43291 1.57423 1.08047 1.07282 1.19675 1.33216 1.01410 0.90189 0.84826 1.25371 0.96024 0.97798 0.95071 1.69649 1.39404 1.39786 1.00825 0.87266 0.80339 0.83718 0.80173 1.19700 1.20991 1.18122 1.17023 0.79001 0.84428 0.83001 1.90634 1.56067 1.68933 1.31362 1.21611 1.08530 0.94833 0.90095 1.21371 1.09464 0.91066 0.99835 1.21219 1.09104 0.97894 0.85410 1.20237 1.01938 0.92303 0.99058 1.45901 1.48966 1.07584 1.05175 1.20898 0.94187 0.86377 0.90029 0.88502 1.22106 0.96925 1.04398 0.98386 1.22621 0.92431 0.99725 1.03077 1.23050 0.97359 1.02744 0.98683 1.22918 1.03525 1.00394 0.93546 1.74413 1.14814 0.89237 1.24807 0.88729 0.92311 0.92220 0.87319 0.86973 0.91651 0.83169 0.91150 0.90213 0.91901 0.90888 0.89536 0.92259 0.85535 0.89001 0.88704 0.88297 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.56 101.05 1.07 1.61 16 2 O -0.37 -7.07 10.57 -39.25 -0.41 -7.48 16 3 C 0.45 10.27 7.99 36.01 0.29 10.56 16 4 O -0.49 -12.46 16.06 -18.75 -0.30 -12.76 16 5 C 0.11 2.46 4.50 -5.19 -0.02 2.43 16 6 N -0.44 -11.42 1.71 -117.25 -0.20 -11.62 16 7 C -0.32 -8.62 8.55 -14.99 -0.13 -8.75 16 8 H 0.13 3.90 5.96 -52.49 -0.31 3.59 16 9 C 0.06 1.70 5.39 -17.45 -0.09 1.60 16 10 N -0.86 -23.74 13.96 55.50 0.77 -22.97 16 11 Si 0.86 20.04 24.75 -169.99 -4.21 15.83 16 12 H -0.27 -5.93 6.63 56.52 0.37 -5.56 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.26 -6.04 7.09 56.52 0.40 -5.64 16 15 C 0.58 14.96 7.45 -12.44 -0.09 14.87 16 16 O -0.59 -15.69 16.57 5.27 0.09 -15.61 16 17 C 0.01 0.22 6.86 -82.77 -0.57 -0.34 16 18 C -0.19 -3.74 10.73 -39.35 -0.42 -4.16 16 19 C -0.01 -0.22 6.92 -82.21 -0.57 -0.79 16 20 C -0.08 -0.85 9.92 36.01 0.36 -0.50 16 21 N -0.29 -5.17 3.04 -50.67 -0.15 -5.33 16 22 C 0.19 2.62 3.17 -67.94 -0.22 2.41 16 23 H 0.10 1.06 6.31 -51.93 -0.33 0.74 16 24 C -0.16 -2.24 9.21 37.16 0.34 -1.90 16 25 C -0.16 -2.28 5.34 -90.62 -0.48 -2.76 16 26 C -0.18 -2.03 10.18 -26.73 -0.27 -2.30 16 27 C -0.17 -1.85 9.73 -26.73 -0.26 -2.11 16 28 N -0.20 -4.49 8.26 33.41 0.28 -4.21 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 31 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.11 2.50 3.22 -51.93 -0.17 2.33 16 33 H 0.11 2.43 7.52 -51.93 -0.39 2.04 16 34 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.58 7.03 -51.92 -0.37 0.22 16 39 H 0.07 0.80 7.29 -51.93 -0.38 0.42 16 40 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.13 2.32 7.99 -51.93 -0.42 1.91 16 43 H 0.09 0.86 8.05 -51.93 -0.42 0.45 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.09 0.88 7.61 -51.93 -0.39 0.48 16 LS Contribution 382.83 15.07 5.77 5.77 Total: -1.00 -33.74 382.83 -6.00 -39.75 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -6.56 Total: 8.75 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -1.08 Total: 9.86 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.70 Total: -44.12 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.63 Total: -35.84 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.21 Total: 15.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.74 -6.00 -39.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346774864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.658 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds