Wall clock time and date at job start Tue Mar 31 2020 18:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34226 * 117.00096 * 2 1 4 4 O 1.20830 * 119.99930 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00165 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47313 * 180.02562 * 5 3 2 7 7 C 1.36910 * 119.99798 * 264.75734 * 6 5 3 8 8 H 1.07997 * 119.99730 * 139.35647 * 7 6 5 9 9 C 1.39022 * 119.99889 * 319.35552 * 7 6 5 10 10 N 1.31384 * 119.99609 * 166.21153 * 9 7 6 11 11 Si 1.86793 * 120.00342 * 346.20869 * 9 7 6 12 12 H 1.48496 * 109.47425 * 91.45060 * 11 9 7 13 13 H 1.48494 * 109.47263 * 211.45303 * 11 9 7 14 14 H 1.48507 * 109.47083 * 331.45066 * 11 9 7 15 15 C 1.34777 * 119.99913 * 84.75899 * 6 5 3 16 16 O 1.21605 * 120.00148 * 4.99889 * 15 6 5 17 17 C 1.47608 * 119.99538 * 184.99996 * 15 6 5 18 18 C 1.41546 * 126.51826 * 174.24852 * 17 15 6 19 19 C 1.35355 * 105.49728 * 179.74126 * 18 17 15 20 20 C 1.50701 * 126.37479 * 180.21613 * 19 18 17 21 21 N 1.35044 * 107.24422 * 0.37143 * 19 18 17 22 22 C 1.46495 * 124.88139 * 179.87669 * 21 19 18 23 23 H 1.09003 * 109.47122 * 359.71485 * 22 21 19 24 24 C 1.53007 * 109.47113 * 239.71817 * 22 21 19 25 25 C 1.52989 * 109.47500 * 119.71887 * 22 21 19 26 26 C 1.53002 * 117.49949 * 248.62071 * 25 22 21 27 27 C 1.52993 * 60.00174 * 252.50932 * 26 25 22 28 28 N 1.28471 * 110.23921 * 359.60834 * 21 19 18 29 29 H 1.08999 * 109.47253 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46832 * 299.99693 * 1 2 3 31 31 H 1.08998 * 109.47242 * 59.99829 * 1 2 3 32 32 H 1.09003 * 109.46651 * 59.99846 * 5 3 2 33 33 H 1.09005 * 109.47040 * 300.00499 * 5 3 2 34 34 H 0.96997 * 119.99767 * 180.02562 * 10 9 7 35 35 H 1.07999 * 127.25078 * 359.94947 * 18 17 15 36 36 H 1.08996 * 109.47480 * 270.17845 * 20 19 18 37 37 H 1.08998 * 109.47250 * 30.18524 * 20 19 18 38 38 H 1.09010 * 109.47028 * 150.18187 * 20 19 18 39 39 H 1.09001 * 109.47141 * 179.97438 * 24 22 21 40 40 H 1.08995 * 109.47039 * 300.00088 * 24 22 21 41 41 H 1.09001 * 109.46905 * 59.99619 * 24 22 21 42 42 H 1.09005 * 115.56615 * 34.30760 * 25 22 21 43 43 H 1.09001 * 117.50109 * 0.02562 * 26 25 22 44 44 H 1.09002 * 117.50181 * 145.02126 * 26 25 22 45 45 H 1.09004 * 117.49793 * 252.51076 * 27 26 25 46 46 H 1.09001 * 117.52422 * 107.48381 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.2802 3.3057 -1.1794 8 1 3.9592 4.3231 -1.3473 9 6 4.9965 2.6316 -2.1619 10 7 5.0522 3.1150 -3.3823 11 14 5.8796 1.0388 -1.7470 12 1 4.9770 -0.1107 -2.0101 13 1 7.0973 0.9144 -2.5877 14 1 6.2665 1.0463 -0.3133 15 6 4.0702 3.3559 1.1636 16 8 3.8939 2.7772 2.2185 17 6 4.3809 4.7988 1.1562 18 6 4.3951 5.6631 2.2771 19 6 4.7364 6.8796 1.7914 20 6 4.8940 8.1484 2.5892 21 7 4.9061 6.7453 0.4584 22 6 5.2793 7.8305 -0.4521 23 1 5.3920 8.7560 0.1125 24 6 4.1872 8.0077 -1.5090 25 6 6.6026 7.4876 -1.1389 26 6 7.8286 8.3247 -0.7683 27 6 7.1654 8.5032 -2.1354 28 7 4.6986 5.5279 0.1045 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 3.9564 0.7805 -0.8892 33 1 3.9558 0.7808 0.8908 34 1 5.5516 2.6446 -4.0680 35 1 4.1821 5.4055 3.3040 36 1 3.9385 8.6710 2.6332 37 1 5.2214 7.9039 3.5997 38 1 5.6363 8.7881 2.1116 39 1 4.4646 8.8155 -2.1863 40 1 4.0744 7.0822 -2.0736 41 1 3.2443 8.2520 -1.0197 42 1 6.7612 6.4308 -1.3538 43 1 7.6924 9.1194 -0.0348 44 1 8.7936 7.8186 -0.7393 45 1 7.6940 8.1145 -3.0058 46 1 6.5925 9.4154 -2.3021 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346774864.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:58 Heat of formation + Delta-G solvation = -8.454202 kcal Electronic energy + Delta-G solvation = -30363.480045 eV Core-core repulsion = 26256.659709 eV Total energy + Delta-G solvation = -4106.820336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.50704 -41.72884 -40.26351 -38.80132 -37.60814 -36.79024 -34.48930 -33.97355 -33.49457 -31.22722 -30.23329 -28.17247 -27.61198 -27.08749 -25.65546 -23.98356 -23.16376 -22.46787 -21.80162 -21.21239 -20.23196 -19.35689 -18.97557 -18.00997 -17.95333 -17.48080 -17.08684 -16.89618 -16.79424 -16.09340 -15.74789 -15.62351 -15.42241 -14.84469 -14.73073 -14.58751 -14.37582 -14.11362 -13.97516 -13.88224 -13.64849 -13.55363 -13.30822 -13.20276 -13.02757 -12.95146 -12.75605 -12.33872 -12.31317 -12.06266 -11.99550 -11.85781 -11.73878 -11.39325 -11.30317 -11.17270 -10.98694 -10.76130 -9.98259 -9.75702 -9.66697 -8.42275 -6.11134 0.74819 1.06472 1.14162 1.26094 1.32130 1.38457 1.56305 1.70152 2.15525 2.47341 2.56037 2.85829 3.04744 3.40401 3.74462 3.79341 3.84940 3.86774 3.92394 3.97786 4.03519 4.09780 4.22115 4.27963 4.28784 4.32827 4.42827 4.60176 4.62036 4.69015 4.78356 4.79521 4.83611 4.86776 5.00365 5.09184 5.16526 5.19243 5.20499 5.25304 5.28811 5.33445 5.56770 6.04667 6.14863 6.45355 6.66529 6.87039 7.18609 7.40328 7.59385 8.70336 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.004560 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.729560 B = 6139.248367 C = 7288.931554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.454 3.546 4 O -0.524 6.524 5 C 0.097 3.903 6 N -0.450 5.450 7 C -0.318 4.318 8 H 0.103 0.897 9 C 0.024 3.976 10 N -0.896 5.896 11 Si 0.908 3.092 12 H -0.241 1.241 13 H -0.278 1.278 14 H -0.262 1.262 15 C 0.565 3.435 16 O -0.606 6.606 17 C -0.037 4.037 18 C -0.215 4.215 19 C 0.012 3.988 20 C -0.076 4.076 21 N -0.282 5.282 22 C 0.181 3.819 23 H 0.146 0.854 24 C -0.155 4.155 25 C -0.193 4.193 26 C -0.161 4.161 27 C -0.150 4.150 28 N -0.233 5.233 29 H 0.143 0.857 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.127 0.873 34 H 0.278 0.722 35 H 0.159 0.841 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.034 0.966 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.125 0.875 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 9.918 5.216 11.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.296 3.704 4 O -0.412 6.412 5 C -0.028 4.028 6 N -0.170 5.170 7 C -0.447 4.447 8 H 0.121 0.879 9 C -0.179 4.179 10 N -0.534 5.534 11 Si 0.732 3.268 12 H -0.167 1.167 13 H -0.204 1.204 14 H -0.186 1.186 15 C 0.356 3.644 16 O -0.491 6.491 17 C -0.196 4.196 18 C -0.243 4.243 19 C -0.112 4.112 20 C -0.133 4.133 21 N -0.072 5.072 22 C 0.082 3.918 23 H 0.163 0.837 24 C -0.212 4.212 25 C -0.212 4.212 26 C -0.197 4.197 27 C -0.188 4.188 28 N -0.068 5.068 29 H 0.161 0.839 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.145 0.855 34 H 0.088 0.912 35 H 0.176 0.824 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.054 0.946 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.143 0.857 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.385 9.935 4.285 10.908 hybrid contribution -0.092 -1.295 0.342 1.343 sum 1.294 8.640 4.627 9.886 Atomic orbital electron populations 1.23590 0.74693 1.06015 1.02250 1.86485 1.25284 1.32006 1.84035 1.24497 0.92630 0.81738 0.71531 1.90607 1.67231 1.37632 1.45766 1.21562 0.87910 0.87302 1.06008 1.43328 1.57911 1.08963 1.06783 1.19387 1.33826 1.00731 0.90759 0.87927 1.25913 0.96311 1.01026 0.94654 1.69736 1.40439 1.41532 1.01673 0.86450 0.79768 0.80987 0.79582 1.16672 1.20405 1.18577 1.17524 0.78411 0.85697 0.82791 1.90573 1.57081 1.69755 1.31675 1.21671 1.11251 0.94477 0.92158 1.21607 1.11328 0.91883 0.99514 1.22029 1.05325 0.99047 0.84816 1.20502 1.04133 0.89614 0.99095 1.46329 1.47269 1.06991 1.06586 1.21356 0.93742 0.86633 0.90051 0.83668 1.22072 0.97484 1.03029 0.98656 1.22363 0.94350 0.97646 1.06863 1.23184 0.95432 1.01874 0.99245 1.23048 1.02621 0.99854 0.93253 1.74313 1.15806 0.91286 1.25376 0.83860 0.92259 0.92431 0.86836 0.85488 0.91237 0.82363 0.88932 0.88480 0.88979 0.87265 0.94625 0.91973 0.91228 0.85722 0.89188 0.89013 0.85672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.56 113.37 1.20 1.97 16 2 O -0.36 -13.56 10.57 -51.38 -0.54 -14.10 16 3 C 0.45 21.12 7.99 71.24 0.57 21.69 16 4 O -0.52 -27.73 16.06 21.95 0.35 -27.37 16 5 C 0.10 4.61 4.50 85.63 0.39 4.99 16 6 N -0.45 -24.47 1.71 -643.12 -1.10 -25.57 16 7 C -0.32 -18.44 8.55 84.09 0.72 -17.72 16 8 H 0.10 6.54 5.96 -2.91 -0.02 6.52 16 9 C 0.02 1.34 5.39 84.95 0.46 1.80 16 10 N -0.90 -51.82 13.96 21.68 0.30 -51.52 16 11 Si 0.91 42.00 24.75 68.60 1.70 43.70 16 12 H -0.24 -10.01 6.63 99.48 0.66 -9.35 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 H -0.26 -12.22 7.09 99.48 0.71 -11.51 16 15 C 0.56 30.97 7.45 86.72 0.65 31.62 16 16 O -0.61 -33.80 16.57 -4.05 -0.07 -33.87 16 17 C -0.04 -1.86 6.86 42.43 0.29 -1.56 16 18 C -0.21 -8.68 10.73 22.42 0.24 -8.44 16 19 C 0.01 0.38 6.92 41.40 0.29 0.66 16 20 C -0.08 -1.34 9.92 71.24 0.71 -0.63 16 21 N -0.28 -10.23 3.04 -314.21 -0.96 -11.18 16 22 C 0.18 4.85 3.17 44.99 0.14 5.00 16 23 H 0.15 2.47 6.31 -2.39 -0.02 2.46 16 24 C -0.15 -4.28 9.21 71.98 0.66 -3.62 16 25 C -0.19 -5.47 5.34 -10.80 -0.06 -5.52 16 26 C -0.16 -3.15 10.18 30.59 0.31 -2.84 16 27 C -0.15 -3.03 9.73 30.59 0.30 -2.73 16 28 N -0.23 -11.15 8.26 -48.20 -0.40 -11.55 16 29 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.06 1.67 8.13 -2.38 -0.02 1.65 16 31 H 0.06 1.65 8.13 -2.39 -0.02 1.63 16 32 H 0.11 5.22 3.22 -2.39 -0.01 5.22 16 33 H 0.13 5.58 7.52 -2.38 -0.02 5.56 16 34 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.16 5.88 8.06 -2.91 -0.02 5.86 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.09 1.14 7.03 -2.38 -0.02 1.13 16 39 H 0.11 2.15 7.29 -2.39 -0.02 2.14 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.07 2.79 7.99 -2.38 -0.02 2.77 16 43 H 0.12 1.66 8.05 -2.39 -0.02 1.64 16 44 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 46 H 0.13 1.78 7.61 -2.39 -0.02 1.76 16 Total: -1.00 -82.06 382.83 7.10 -74.96 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.95 Total: 31.87 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 6.86 Total: 24.64 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -2.15 Total: -99.83 kcal Atomic # 8 Polarization: -75.09 SS G_CDS: -0.26 Total: -75.34 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.70 Total: 43.70 kcal Total: -82.06 7.10 -74.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346774864.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.502 kcal (2) G-P(sol) polarization free energy of solvation -82.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds