Wall clock time and date at job start Tue Mar 31 2020 18:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34227 * 117.00307 * 2 1 4 4 O 1.20817 * 120.00053 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00173 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47165 * 184.76434 * 5 3 2 7 7 C 1.36915 * 119.99699 * 96.17504 * 6 5 3 8 8 H 1.08000 * 119.99492 * 220.60426 * 7 6 5 9 9 C 1.39021 * 120.00431 * 40.33250 * 7 6 5 10 10 N 1.31373 * 119.99921 * 211.77832 * 9 7 6 11 11 Si 1.86806 * 119.99821 * 31.77549 * 9 7 6 12 12 H 1.48497 * 109.46848 * 86.82615 * 11 9 7 13 13 H 1.48500 * 109.46875 * 206.82655 * 11 9 7 14 14 H 1.48501 * 109.46967 * 326.82933 * 11 9 7 15 15 C 1.34767 * 120.00114 * 276.16795 * 6 5 3 16 16 O 1.21616 * 120.00086 * 355.25302 * 15 6 5 17 17 C 1.47609 * 120.00293 * 175.24551 * 15 6 5 18 18 C 1.41550 * 126.52543 * 184.88513 * 17 15 6 19 19 C 1.35353 * 105.50063 * 179.97438 * 18 17 15 20 20 C 1.50698 * 126.37702 * 180.02562 * 19 18 17 21 21 N 1.35047 * 107.24157 * 0.02562 * 19 18 17 22 22 C 1.46500 * 124.88199 * 180.02562 * 21 19 18 23 23 H 1.09007 * 109.46919 * 359.97438 * 22 21 19 24 24 C 1.52995 * 109.47472 * 119.99683 * 22 21 19 25 25 C 1.53003 * 109.47033 * 240.00057 * 22 21 19 26 26 C 1.53001 * 117.49896 * 128.62074 * 25 22 21 27 27 C 1.53001 * 117.50028 * 59.99787 * 25 22 21 28 28 N 1.28476 * 110.24186 * 359.72304 * 21 19 18 29 29 H 1.08997 * 109.47233 * 59.99830 * 1 2 3 30 30 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46885 * 299.99922 * 1 2 3 32 32 H 1.09002 * 109.47344 * 64.76391 * 5 3 2 33 33 H 1.09001 * 109.47097 * 304.76773 * 5 3 2 34 34 H 0.97010 * 119.99777 * 179.97438 * 10 9 7 35 35 H 1.07998 * 127.24825 * 359.97438 * 18 17 15 36 36 H 1.08999 * 109.47414 * 89.97200 * 20 19 18 37 37 H 1.08998 * 109.46803 * 209.97647 * 20 19 18 38 38 H 1.08997 * 109.47015 * 329.97257 * 20 19 18 39 39 H 1.09010 * 109.47069 * 180.02562 * 24 22 21 40 40 H 1.09003 * 109.47555 * 299.99984 * 24 22 21 41 41 H 1.08997 * 109.47572 * 60.00305 * 24 22 21 42 42 H 1.08996 * 115.54928 * 274.32020 * 25 22 21 43 43 H 1.08998 * 117.49717 * 359.97438 * 26 25 22 44 44 H 1.08995 * 117.50124 * 145.01940 * 26 25 22 45 45 H 1.08996 * 117.49742 * 214.98025 * 27 25 22 46 46 H 1.08997 * 117.49604 * 359.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9821 2.6748 0.1143 7 6 4.3042 3.1950 1.3391 8 1 3.9874 4.1935 1.6019 9 6 5.0341 2.4358 2.2466 10 7 4.8390 2.5877 3.5369 11 14 6.2924 1.1998 1.6313 12 1 7.5964 1.8805 1.4281 13 1 6.4511 0.1148 2.6327 14 1 5.8298 0.6217 0.3440 15 6 4.0475 3.4507 -0.9857 16 8 3.8456 2.9678 -2.0834 17 6 4.3641 4.8868 -0.8582 18 6 4.3736 5.8433 -1.9016 19 6 4.7171 7.0142 -1.3159 20 6 4.8665 8.3472 -2.0028 21 7 4.9010 6.7653 -0.0013 22 6 5.2831 7.7683 0.9958 23 1 5.3946 8.7384 0.5111 24 6 4.1989 7.8568 2.0716 25 6 6.6106 7.3657 1.6413 26 6 7.7243 8.4141 1.6793 27 6 7.8273 7.2229 0.7247 28 7 4.6866 5.5239 0.2503 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9518 0.8564 -0.9304 33 1 3.9602 0.7084 0.8433 34 1 5.3481 2.0577 4.1701 35 1 4.1533 5.6744 -2.9453 36 1 3.9106 8.8708 -1.9918 37 1 5.6137 8.9438 -1.4794 38 1 5.1834 8.1911 -3.0339 39 1 4.4831 8.6035 2.8133 40 1 3.2532 8.1437 1.6118 41 1 4.0878 6.8869 2.5562 42 1 6.5340 6.6817 2.4864 43 1 7.5114 9.3905 1.2441 44 1 8.3806 8.4199 2.5496 45 1 8.5513 6.4450 0.9670 46 1 7.6819 7.4153 -0.3382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346774865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:03 Heat of formation + Delta-G solvation = 9.831260 kcal Electronic energy + Delta-G solvation = -30482.131293 eV Core-core repulsion = 26376.103874 eV Total energy + Delta-G solvation = -4106.027419 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.01550 -39.87259 -38.36797 -37.59936 -35.78561 -34.74586 -33.26299 -32.26893 -31.93880 -29.74105 -28.66864 -26.80207 -26.27030 -25.06094 -24.06094 -22.48417 -22.33035 -20.76741 -20.42343 -19.74509 -18.49193 -17.54053 -17.11515 -16.41055 -16.15343 -15.81621 -15.49173 -15.16373 -15.03610 -14.89354 -14.56153 -13.92611 -13.72120 -13.50413 -13.09767 -12.93430 -12.81174 -12.70391 -12.55688 -12.49603 -12.34768 -11.99736 -11.91566 -11.68553 -11.60216 -11.55578 -11.32749 -11.01451 -10.92311 -10.72907 -10.34141 -10.27337 -10.20447 -10.14098 -9.74871 -9.48008 -9.26968 -8.72160 -8.32556 -8.22240 -7.75424 -6.47358 -3.93993 2.49346 2.73009 2.91391 2.96908 3.11039 3.24150 3.31814 3.33687 3.93086 4.15244 4.34440 4.39838 4.49637 4.81405 4.88902 4.95797 5.02599 5.06839 5.21215 5.27925 5.42732 5.43962 5.51299 5.54799 5.58399 5.59292 5.64188 5.71296 5.84985 5.87108 5.89900 5.92125 5.97922 6.08443 6.10641 6.21517 6.27033 6.36690 6.46567 6.54427 6.93501 7.17083 7.26342 7.46410 8.04909 8.46350 8.61209 8.75625 9.07364 9.40111 9.65950 10.62152 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004688 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.521644 B = 5971.486980 C = 7044.568245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.448 3.552 4 O -0.492 6.492 5 C 0.123 3.877 6 N -0.435 5.435 7 C -0.331 4.331 8 H 0.131 0.869 9 C 0.075 3.925 10 N -0.839 5.839 11 Si 0.841 3.159 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.256 1.256 15 C 0.570 3.430 16 O -0.589 6.589 17 C 0.010 3.990 18 C -0.189 4.189 19 C -0.017 4.017 20 C -0.077 4.077 21 N -0.287 5.287 22 C 0.184 3.816 23 H 0.098 0.902 24 C -0.160 4.160 25 C -0.159 4.159 26 C -0.173 4.173 27 C -0.167 4.167 28 N -0.199 5.199 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.273 0.727 35 H 0.150 0.850 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 8.663 -3.421 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.289 3.711 4 O -0.376 6.376 5 C -0.003 4.003 6 N -0.155 5.155 7 C -0.459 4.459 8 H 0.148 0.852 9 C -0.133 4.133 10 N -0.472 5.472 11 Si 0.666 3.334 12 H -0.200 1.200 13 H -0.207 1.207 14 H -0.181 1.181 15 C 0.360 3.640 16 O -0.473 6.473 17 C -0.150 4.150 18 C -0.217 4.217 19 C -0.139 4.139 20 C -0.135 4.135 21 N -0.076 5.076 22 C 0.083 3.917 23 H 0.116 0.884 24 C -0.217 4.217 25 C -0.178 4.178 26 C -0.210 4.210 27 C -0.204 4.204 28 N -0.032 5.032 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.140 0.860 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.490 8.620 -2.507 9.100 hybrid contribution 0.402 -0.553 -0.801 1.053 sum 1.892 8.067 -3.309 8.922 Atomic orbital electron populations 1.23115 0.77721 1.02720 1.02188 1.86520 1.22535 1.34576 1.84985 1.24886 0.93010 0.81134 0.72090 1.90612 1.66679 1.36302 1.44046 1.21423 0.86132 0.87865 1.04874 1.43186 1.56807 1.07655 1.07837 1.19494 1.34202 1.03890 0.88299 0.85231 1.25331 0.96758 0.96660 0.94592 1.69918 1.36465 1.39373 1.01493 0.87521 0.84418 0.81410 0.80086 1.19952 1.20730 1.18056 1.17097 0.79342 0.84108 0.83422 1.90631 1.55882 1.74132 1.26611 1.21647 1.08381 0.95009 0.89961 1.21367 1.09428 0.90750 1.00179 1.21206 1.09306 0.97757 0.85666 1.20232 1.01934 0.91232 1.00134 1.45969 1.48730 1.07157 1.05768 1.20931 0.94051 0.88496 0.88229 0.88422 1.22102 0.97130 1.04603 0.97902 1.22589 0.88657 1.03412 1.03121 1.23009 1.01654 0.93965 1.02406 1.22843 1.00468 1.00331 0.96803 1.74398 1.14685 0.89615 1.24483 0.92429 0.88808 0.92250 0.87311 0.87159 0.91629 0.83267 0.91142 0.92026 0.90261 0.90783 0.92149 0.89732 0.86033 0.88897 0.88441 0.88520 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.56 101.05 1.07 1.62 16 2 O -0.37 -7.10 10.56 -39.25 -0.41 -7.51 16 3 C 0.45 10.27 7.99 36.01 0.29 10.55 16 4 O -0.49 -12.64 15.96 -18.74 -0.30 -12.94 16 5 C 0.12 2.85 4.13 -5.19 -0.02 2.83 16 6 N -0.44 -11.22 1.67 -117.25 -0.20 -11.41 16 7 C -0.33 -8.92 8.36 -14.99 -0.13 -9.05 16 8 H 0.13 3.75 5.94 -52.49 -0.31 3.44 16 9 C 0.08 1.97 5.01 -17.46 -0.09 1.89 16 10 N -0.84 -22.77 13.95 55.50 0.77 -22.00 16 11 Si 0.84 19.60 26.56 -169.99 -4.52 15.08 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.26 -5.72 5.67 56.52 0.32 -5.40 16 15 C 0.57 14.81 7.32 -12.44 -0.09 14.72 16 16 O -0.59 -15.85 16.58 5.26 0.09 -15.76 16 17 C 0.01 0.24 6.87 -82.77 -0.57 -0.33 16 18 C -0.19 -3.73 10.73 -39.35 -0.42 -4.15 16 19 C -0.02 -0.27 6.92 -82.21 -0.57 -0.84 16 20 C -0.08 -0.84 9.92 36.00 0.36 -0.49 16 21 N -0.29 -5.07 2.92 -50.66 -0.15 -5.22 16 22 C 0.18 2.53 3.13 -67.93 -0.21 2.32 16 23 H 0.10 1.05 6.30 -51.92 -0.33 0.72 16 24 C -0.16 -2.17 9.34 37.15 0.35 -1.82 16 25 C -0.16 -2.19 5.21 -90.62 -0.47 -2.67 16 26 C -0.17 -1.80 10.18 -26.73 -0.27 -2.07 16 27 C -0.17 -2.21 10.12 -26.73 -0.27 -2.48 16 28 N -0.20 -4.42 8.36 33.41 0.28 -4.14 16 29 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 32 H 0.11 2.37 7.52 -51.93 -0.39 1.98 16 33 H 0.11 2.47 4.85 -51.93 -0.25 2.22 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 35 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.56 7.02 -51.93 -0.36 0.20 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.12 1.95 8.11 -51.93 -0.42 1.53 16 43 H 0.09 0.79 8.05 -51.93 -0.42 0.37 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -33.68 385.97 -6.44 -40.12 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.77 Total: 7.93 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -1.05 Total: 10.02 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.71 Total: -42.76 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -0.63 Total: -36.21 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.52 Total: 15.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.68 -6.44 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346774865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.956 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds