Wall clock time and date at job start Tue Mar 31 2020 18:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34227 * 117.00307 * 2 1 4 4 O 1.20817 * 120.00053 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00173 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47165 * 184.76434 * 5 3 2 7 7 C 1.36915 * 119.99699 * 96.17504 * 6 5 3 8 8 H 1.08000 * 119.99492 * 220.60426 * 7 6 5 9 9 C 1.39021 * 120.00431 * 40.33250 * 7 6 5 10 10 N 1.31373 * 119.99921 * 211.77832 * 9 7 6 11 11 Si 1.86806 * 119.99821 * 31.77549 * 9 7 6 12 12 H 1.48497 * 109.46848 * 86.82615 * 11 9 7 13 13 H 1.48500 * 109.46875 * 206.82655 * 11 9 7 14 14 H 1.48501 * 109.46967 * 326.82933 * 11 9 7 15 15 C 1.34767 * 120.00114 * 276.16795 * 6 5 3 16 16 O 1.21616 * 120.00086 * 355.25302 * 15 6 5 17 17 C 1.47609 * 120.00293 * 175.24551 * 15 6 5 18 18 C 1.41550 * 126.52543 * 184.88513 * 17 15 6 19 19 C 1.35353 * 105.50063 * 179.97438 * 18 17 15 20 20 C 1.50698 * 126.37702 * 180.02562 * 19 18 17 21 21 N 1.35047 * 107.24157 * 0.02562 * 19 18 17 22 22 C 1.46500 * 124.88199 * 180.02562 * 21 19 18 23 23 H 1.09007 * 109.46919 * 359.97438 * 22 21 19 24 24 C 1.52995 * 109.47472 * 119.99683 * 22 21 19 25 25 C 1.53003 * 109.47033 * 240.00057 * 22 21 19 26 26 C 1.53001 * 117.49896 * 128.62074 * 25 22 21 27 27 C 1.53001 * 117.50028 * 59.99787 * 25 22 21 28 28 N 1.28476 * 110.24186 * 359.72304 * 21 19 18 29 29 H 1.08997 * 109.47233 * 59.99830 * 1 2 3 30 30 H 1.08997 * 109.47243 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46885 * 299.99922 * 1 2 3 32 32 H 1.09002 * 109.47344 * 64.76391 * 5 3 2 33 33 H 1.09001 * 109.47097 * 304.76773 * 5 3 2 34 34 H 0.97010 * 119.99777 * 179.97438 * 10 9 7 35 35 H 1.07998 * 127.24825 * 359.97438 * 18 17 15 36 36 H 1.08999 * 109.47414 * 89.97200 * 20 19 18 37 37 H 1.08998 * 109.46803 * 209.97647 * 20 19 18 38 38 H 1.08997 * 109.47015 * 329.97257 * 20 19 18 39 39 H 1.09010 * 109.47069 * 180.02562 * 24 22 21 40 40 H 1.09003 * 109.47555 * 299.99984 * 24 22 21 41 41 H 1.08997 * 109.47572 * 60.00305 * 24 22 21 42 42 H 1.08996 * 115.54928 * 274.32020 * 25 22 21 43 43 H 1.08998 * 117.49717 * 359.97438 * 26 25 22 44 44 H 1.08995 * 117.50124 * 145.01940 * 26 25 22 45 45 H 1.08996 * 117.49742 * 214.98025 * 27 25 22 46 46 H 1.08997 * 117.49604 * 359.97438 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9821 2.6748 0.1143 7 6 4.3042 3.1950 1.3391 8 1 3.9874 4.1935 1.6019 9 6 5.0341 2.4358 2.2466 10 7 4.8390 2.5877 3.5369 11 14 6.2924 1.1998 1.6313 12 1 7.5964 1.8805 1.4281 13 1 6.4511 0.1148 2.6327 14 1 5.8298 0.6217 0.3440 15 6 4.0475 3.4507 -0.9857 16 8 3.8456 2.9678 -2.0834 17 6 4.3641 4.8868 -0.8582 18 6 4.3736 5.8433 -1.9016 19 6 4.7171 7.0142 -1.3159 20 6 4.8665 8.3472 -2.0028 21 7 4.9010 6.7653 -0.0013 22 6 5.2831 7.7683 0.9958 23 1 5.3946 8.7384 0.5111 24 6 4.1989 7.8568 2.0716 25 6 6.6106 7.3657 1.6413 26 6 7.7243 8.4141 1.6793 27 6 7.8273 7.2229 0.7247 28 7 4.6866 5.5239 0.2503 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9518 0.8564 -0.9304 33 1 3.9602 0.7084 0.8433 34 1 5.3481 2.0577 4.1701 35 1 4.1533 5.6744 -2.9453 36 1 3.9106 8.8708 -1.9918 37 1 5.6137 8.9438 -1.4794 38 1 5.1834 8.1911 -3.0339 39 1 4.4831 8.6035 2.8133 40 1 3.2532 8.1437 1.6118 41 1 4.0878 6.8869 2.5562 42 1 6.5340 6.6817 2.4864 43 1 7.5114 9.3905 1.2441 44 1 8.3806 8.4199 2.5496 45 1 8.5513 6.4450 0.9670 46 1 7.6819 7.4153 -0.3382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346774865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:02 Heat of formation + Delta-G solvation = -10.783472 kcal Electronic energy + Delta-G solvation = -30483.025215 eV Core-core repulsion = 26376.103874 eV Total energy + Delta-G solvation = -4106.921340 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.48045 -41.65961 -40.19195 -38.72092 -37.54560 -36.72192 -34.50058 -33.99503 -33.48779 -31.25177 -30.23663 -28.13588 -27.58502 -27.01453 -25.41035 -23.94840 -23.27168 -22.40559 -21.80429 -21.29757 -20.21147 -19.28637 -18.88622 -17.82420 -17.76864 -17.45838 -17.05372 -16.87350 -16.67706 -16.18385 -15.93315 -15.62467 -15.36967 -14.84202 -14.68120 -14.55303 -14.34815 -14.14170 -13.87632 -13.76303 -13.60430 -13.30510 -13.24715 -13.13846 -12.99441 -12.88233 -12.71539 -12.58565 -12.43586 -12.12618 -12.00582 -11.82674 -11.63430 -11.36025 -11.24361 -11.16050 -11.12251 -10.71112 -9.92583 -9.69834 -9.64040 -8.51160 -6.01918 0.80202 1.13825 1.23848 1.28983 1.36408 1.42165 1.60910 1.72115 2.19333 2.48394 2.62720 2.92911 3.07278 3.33113 3.76443 3.81011 3.85812 3.91907 4.00019 4.06420 4.07859 4.21153 4.23099 4.27034 4.29865 4.30764 4.44413 4.62833 4.63697 4.72385 4.73617 4.80989 4.82911 4.89094 4.97110 5.08848 5.14142 5.18118 5.21272 5.23162 5.30686 5.32179 5.59983 6.05609 6.16829 6.50556 6.72282 6.92335 7.22721 7.46067 7.67204 8.61965 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012168 B = 0.004688 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.521644 B = 5971.486980 C = 7044.568245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.363 6.363 3 C 0.452 3.548 4 O -0.528 6.528 5 C 0.114 3.886 6 N -0.443 5.443 7 C -0.335 4.335 8 H 0.101 0.899 9 C 0.043 3.957 10 N -0.874 5.874 11 Si 0.893 3.107 12 H -0.283 1.283 13 H -0.266 1.266 14 H -0.242 1.242 15 C 0.559 3.441 16 O -0.611 6.611 17 C -0.036 4.036 18 C -0.216 4.216 19 C 0.010 3.990 20 C -0.076 4.076 21 N -0.281 5.281 22 C 0.178 3.822 23 H 0.146 0.854 24 C -0.154 4.154 25 C -0.184 4.184 26 C -0.127 4.127 27 C -0.184 4.184 28 N -0.230 5.230 29 H 0.058 0.942 30 H 0.143 0.857 31 H 0.055 0.945 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.280 0.720 35 H 0.155 0.845 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.084 0.916 43 H 0.129 0.871 44 H 0.108 0.892 45 H 0.079 0.921 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 10.598 -4.262 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.295 3.705 4 O -0.417 6.417 5 C -0.011 4.011 6 N -0.163 5.163 7 C -0.463 4.463 8 H 0.118 0.882 9 C -0.163 4.163 10 N -0.509 5.509 11 Si 0.716 3.284 12 H -0.209 1.209 13 H -0.190 1.190 14 H -0.166 1.166 15 C 0.351 3.649 16 O -0.496 6.496 17 C -0.194 4.194 18 C -0.244 4.244 19 C -0.114 4.114 20 C -0.134 4.134 21 N -0.070 5.070 22 C 0.079 3.921 23 H 0.163 0.837 24 C -0.212 4.212 25 C -0.203 4.203 26 C -0.164 4.164 27 C -0.221 4.221 28 N -0.065 5.065 29 H 0.077 0.923 30 H 0.161 0.839 31 H 0.074 0.926 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.173 0.827 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.080 0.920 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.147 0.853 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.327 10.512 -3.331 11.270 hybrid contribution 0.062 -1.077 -0.511 1.193 sum 2.389 9.435 -3.842 10.464 Atomic orbital electron populations 1.23554 0.74922 1.05897 1.02105 1.86485 1.25110 1.32182 1.84086 1.24707 0.92946 0.81605 0.71285 1.90594 1.67388 1.37714 1.45966 1.21535 0.86958 0.86877 1.05747 1.43236 1.57184 1.08537 1.07339 1.19210 1.35073 1.03215 0.88770 0.88217 1.25772 0.97596 0.98489 0.94454 1.69955 1.37496 1.41006 1.02440 0.86691 0.81367 0.79811 0.80579 1.20899 1.19023 1.16578 1.17596 0.78763 0.85400 0.83190 1.90570 1.56989 1.74966 1.27073 1.21672 1.11122 0.94677 0.91936 1.21581 1.11400 0.91354 1.00108 1.21973 1.05497 0.99130 0.84790 1.20490 1.04088 0.88084 1.00707 1.46406 1.46969 1.06399 1.07251 1.21407 0.93706 0.89133 0.87893 0.83675 1.22058 0.97575 1.02962 0.98574 1.22446 0.89623 1.05596 1.02603 1.23157 0.98043 0.93948 1.01270 1.22849 0.99769 1.02140 0.97370 1.74289 1.15631 0.91833 1.24715 0.92343 0.83945 0.92630 0.86036 0.86412 0.91042 0.82685 0.89048 0.89052 0.88593 0.87284 0.91960 0.94485 0.89803 0.85290 0.87386 0.90276 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.56 113.37 1.20 2.01 16 2 O -0.36 -13.72 10.56 -51.39 -0.54 -14.26 16 3 C 0.45 21.16 7.99 71.24 0.57 21.73 16 4 O -0.53 -28.21 15.96 21.99 0.35 -27.86 16 5 C 0.11 5.40 4.13 85.63 0.35 5.76 16 6 N -0.44 -23.86 1.67 -643.12 -1.08 -24.94 16 7 C -0.33 -19.02 8.36 84.09 0.70 -18.32 16 8 H 0.10 6.23 5.94 -2.91 -0.02 6.22 16 9 C 0.04 2.34 5.01 84.95 0.43 2.77 16 10 N -0.87 -49.26 13.95 21.68 0.30 -48.95 16 11 Si 0.89 41.17 26.56 68.60 1.82 42.99 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 H -0.24 -10.53 5.67 99.48 0.56 -9.97 16 15 C 0.56 30.48 7.32 86.72 0.64 31.12 16 16 O -0.61 -34.19 16.58 -4.08 -0.07 -34.26 16 17 C -0.04 -1.76 6.87 42.43 0.29 -1.47 16 18 C -0.22 -8.67 10.73 22.42 0.24 -8.43 16 19 C 0.01 0.31 6.92 41.40 0.29 0.60 16 20 C -0.08 -1.32 9.92 71.24 0.71 -0.62 16 21 N -0.28 -9.86 2.92 -314.19 -0.92 -10.77 16 22 C 0.18 4.58 3.13 44.99 0.14 4.72 16 23 H 0.15 2.37 6.30 -2.38 -0.02 2.36 16 24 C -0.15 -4.13 9.34 71.98 0.67 -3.46 16 25 C -0.18 -4.94 5.21 -10.79 -0.06 -5.00 16 26 C -0.13 -2.20 10.18 30.60 0.31 -1.89 16 27 C -0.18 -4.63 10.12 30.60 0.31 -4.32 16 28 N -0.23 -10.74 8.36 -48.20 -0.40 -11.14 16 29 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 30 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 32 H 0.12 5.38 7.52 -2.39 -0.02 5.36 16 33 H 0.12 5.32 4.85 -2.39 -0.01 5.31 16 34 H 0.28 14.55 8.31 -92.70 -0.77 13.78 16 35 H 0.16 5.80 8.06 -2.91 -0.02 5.77 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.11 7.02 -2.39 -0.02 1.09 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16 43 H 0.13 1.38 8.05 -2.39 -0.02 1.36 16 44 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -80.58 385.97 7.11 -73.47 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.85 Total: 30.53 kcal Atomic # 6 Polarization: 18.40 SS G_CDS: 6.79 Total: 25.19 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -2.10 Total: -95.81 kcal Atomic # 8 Polarization: -76.12 SS G_CDS: -0.26 Total: -76.38 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.82 Total: 42.99 kcal Total: -80.58 7.11 -73.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346774865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.691 kcal (2) G-P(sol) polarization free energy of solvation -80.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds