Wall clock time and date at job start Tue Mar 31 2020 18:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39755 * 125.83523 * 2 1 4 4 C 1.36111 * 107.82310 * 180.19209 * 3 2 1 5 5 N 1.39476 * 126.21641 * 179.84783 * 4 3 2 6 6 C 1.34784 * 119.99684 * 359.68680 * 5 4 3 7 7 O 1.21288 * 120.00079 * 359.72903 * 6 5 4 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 4 9 9 H 1.09001 * 110.12599 * 305.22186 * 8 6 5 10 10 O 1.44676 * 110.14164 * 183.54826 * 8 6 5 11 11 C 1.45101 * 109.62362 * 244.32683 * 10 8 6 12 12 C 1.52791 * 103.55994 * 24.67526 * 11 10 8 13 13 H 1.09000 * 110.72492 * 75.90603 * 12 11 10 14 14 C 1.51448 * 117.86312 * 204.72188 * 12 11 10 15 15 O 1.43941 * 106.40934 * 174.10200 * 14 12 11 16 16 C 1.42309 * 117.14379 * 302.25197 * 15 14 12 17 17 C 1.54050 * 112.11951 * 53.09947 * 16 15 14 18 18 C 1.51347 * 106.51610 * 306.28644 * 17 16 15 19 19 H 1.09002 * 110.50030 * 303.46812 * 18 17 16 20 20 N 1.35260 * 107.56927 * 359.58292 * 4 3 2 21 21 C 1.46499 * 126.04733 * 180.30221 * 20 4 3 22 22 C 1.50700 * 109.47430 * 89.99856 * 21 20 4 23 23 H 1.07999 * 119.99907 * 0.02562 * 22 21 20 24 24 C 1.37875 * 120.00145 * 180.02562 * 22 21 20 25 25 N 1.31513 * 119.99792 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99933 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47115 * 359.97438 * 26 24 22 28 28 H 1.48507 * 109.47273 * 119.99708 * 26 24 22 29 29 H 1.48505 * 109.47109 * 239.99617 * 26 24 22 30 30 N 1.30844 * 125.83580 * 179.73226 * 2 1 3 31 31 H 1.09001 * 109.47235 * 270.29446 * 1 2 3 32 32 H 1.08993 * 109.47519 * 30.29621 * 1 2 3 33 33 H 1.09004 * 109.47050 * 150.30210 * 1 2 3 34 34 H 1.07998 * 126.09008 * 0.04033 * 3 2 1 35 35 H 0.96999 * 120.00271 * 179.68609 * 5 4 3 36 36 H 1.09004 * 110.60395 * 143.19357 * 11 10 8 37 37 H 1.08999 * 110.60651 * 266.15741 * 11 10 8 38 38 H 1.09003 * 110.06498 * 293.32867 * 14 12 11 39 39 H 1.09001 * 110.05788 * 54.77573 * 14 12 11 40 40 H 1.09003 * 108.95202 * 173.77956 * 16 15 14 41 41 H 1.09006 * 108.95382 * 292.41874 * 16 15 14 42 42 H 1.09000 * 110.03458 * 65.53702 * 17 16 15 43 43 H 1.08996 * 110.04021 * 187.03210 * 17 16 15 44 44 H 1.09002 * 109.47363 * 210.00016 * 21 20 4 45 45 H 1.09003 * 109.46815 * 329.99528 * 21 20 4 46 46 H 0.97006 * 119.99925 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7121 -0.0043 5 7 4.7512 1.5274 -0.0088 6 6 4.6156 2.8684 -0.0155 7 8 3.5095 3.3661 -0.0225 8 6 5.8383 3.7493 -0.0197 9 1 6.4875 3.4938 0.8177 10 8 5.4500 5.1409 0.0574 11 6 5.8447 5.8251 -1.1597 12 6 5.9100 4.7041 -2.1958 13 1 4.9083 4.4080 -2.5073 14 6 6.8068 4.9044 -3.3997 15 8 6.7920 3.6633 -4.1287 16 6 7.2061 2.4948 -3.4298 17 6 6.4363 2.3056 -2.1089 18 6 6.5898 3.5958 -1.3328 19 1 7.6442 3.8308 -1.1876 20 7 3.6092 -0.6404 0.0024 21 6 4.7870 -1.5116 0.0071 22 6 5.1905 -1.8032 1.4295 23 1 4.6258 -1.3821 2.2482 24 6 6.2806 -2.6076 1.6858 25 7 6.9679 -3.1208 0.6889 26 14 6.7802 -2.9696 3.4489 27 1 5.8511 -2.2785 4.3786 28 1 6.7230 -4.4341 3.6889 29 1 8.1642 -2.4837 3.6809 30 7 2.2730 -1.0607 0.0050 31 1 -0.3634 0.0053 1.0276 32 1 -0.3634 0.8872 -0.5184 33 1 -0.3633 -0.8927 -0.5092 34 1 1.9901 2.1597 0.0006 35 1 5.6358 1.1294 -0.0071 36 1 5.0972 6.5662 -1.4429 37 1 6.8221 6.2920 -1.0376 38 1 6.4200 5.7095 -4.0244 39 1 7.8211 5.1374 -3.0757 40 1 7.0390 1.6247 -4.0647 41 1 8.2712 2.5720 -3.2109 42 1 5.3827 2.1164 -2.3146 43 1 6.8624 1.4767 -1.5437 44 1 4.5500 -2.4458 -0.5021 45 1 5.6084 -1.0147 -0.5090 46 1 7.7346 -3.6870 0.8692 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570607734.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:49 Heat of formation + Delta-G solvation = -39.116980 kcal Electronic energy + Delta-G solvation = -30435.504608 eV Core-core repulsion = 26327.354634 eV Total energy + Delta-G solvation = -4108.149974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55286 -40.54590 -38.84361 -37.66426 -34.91011 -33.89635 -33.35071 -32.18350 -31.98194 -29.70129 -29.02494 -27.88442 -26.06673 -25.92384 -24.01347 -23.07728 -22.55430 -21.34842 -20.73948 -19.69445 -19.11647 -17.17535 -16.98898 -16.72736 -16.52055 -16.33331 -16.10713 -15.64210 -15.30109 -14.90582 -14.78740 -14.37430 -14.18920 -14.02757 -13.89077 -13.61165 -13.31854 -12.88663 -12.79412 -12.56102 -12.50922 -12.06428 -11.82465 -11.68589 -11.66384 -11.56856 -11.49350 -11.08754 -10.95930 -10.93813 -10.51693 -10.48233 -10.38230 -10.34777 -9.90778 -9.82000 -9.73996 -9.29043 -8.76490 -7.93076 -7.45001 -6.37615 -4.45890 2.21340 2.62304 3.06964 3.12042 3.21461 3.27353 3.38904 3.52951 3.57542 3.70950 3.83014 4.17479 4.21227 4.37251 4.54918 4.73568 4.85201 4.88973 4.91648 4.95952 5.07039 5.09017 5.29410 5.30871 5.33936 5.35626 5.45586 5.48124 5.63006 5.69674 5.76095 5.94487 6.03850 6.14328 6.17531 6.22566 6.40404 6.43396 6.67303 6.79662 6.96071 7.01368 7.49491 7.55170 7.60086 7.75887 7.89987 8.27818 8.59558 8.68840 9.22107 10.69399 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.004275 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.033394 B = 6548.282701 C = 7843.758752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.295 4.295 4 C 0.302 3.698 5 N -0.638 5.638 6 C 0.509 3.491 7 O -0.496 6.496 8 C 0.081 3.919 9 H 0.119 0.881 10 O -0.349 6.349 11 C 0.062 3.938 12 C -0.168 4.168 13 H 0.102 0.898 14 C 0.082 3.918 15 O -0.386 6.386 16 C 0.069 3.931 17 C -0.152 4.152 18 C -0.125 4.125 19 H 0.100 0.900 20 N -0.344 5.344 21 C 0.257 3.743 22 C -0.540 4.540 23 H 0.065 0.935 24 C 0.067 3.933 25 N -0.890 5.890 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.280 1.280 30 N -0.285 5.285 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.160 0.840 35 H 0.414 0.586 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.043 0.957 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.550 15.696 -7.094 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.327 4.327 4 C 0.080 3.920 5 N -0.287 5.287 6 C 0.294 3.706 7 O -0.368 6.368 8 C 0.020 3.980 9 H 0.136 0.864 10 O -0.267 6.267 11 C -0.014 4.014 12 C -0.187 4.187 13 H 0.120 0.880 14 C 0.006 3.994 15 O -0.305 6.305 16 C -0.008 4.008 17 C -0.190 4.190 18 C -0.144 4.144 19 H 0.118 0.882 20 N -0.130 5.130 21 C 0.139 3.861 22 C -0.578 4.578 23 H 0.084 0.916 24 C -0.136 4.136 25 N -0.528 5.528 26 Si 0.732 3.268 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.206 1.206 30 N -0.110 5.110 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.177 0.823 35 H 0.252 0.748 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.957 14.724 -7.157 16.488 hybrid contribution 1.212 0.074 1.249 1.742 sum 3.169 14.799 -5.908 16.246 Atomic orbital electron populations 1.20019 0.87601 1.02313 1.02164 1.22026 0.96516 0.91034 1.01807 1.21270 0.89128 1.00421 1.21888 1.17914 0.87964 0.83323 1.02841 1.42894 1.08240 1.05398 1.72214 1.20774 0.91678 0.81477 0.76667 1.90644 1.26405 1.73568 1.46181 1.22138 0.92542 0.83717 0.99643 0.86402 1.89096 1.82005 1.17866 1.37708 1.23044 1.00791 0.94352 0.83202 1.23389 1.01939 0.96493 0.96855 0.87972 1.22264 0.97886 0.86929 0.92323 1.87781 1.88367 1.15105 1.39267 1.22573 0.97014 0.87937 0.93244 1.22218 1.03307 0.96609 0.96821 1.22412 1.00920 0.97984 0.93079 0.88165 1.49336 1.06523 1.02112 1.55003 1.19606 0.77806 0.89759 0.98889 1.21393 1.13191 1.31867 0.91385 0.91643 1.24925 0.95696 0.94831 0.98180 1.69923 1.19166 1.32601 1.31072 0.86317 0.78340 0.78488 0.83688 1.19536 1.20502 1.20634 1.77354 0.86120 1.21759 1.25782 0.91309 0.91167 0.91550 0.82251 0.74822 0.88828 0.91249 0.88181 0.92348 0.88182 0.93070 0.89798 0.89359 0.92551 0.93964 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.57 16 2 C 0.05 1.04 7.21 -82.45 -0.59 0.44 16 3 C -0.30 -6.13 9.58 -39.78 -0.38 -6.52 16 4 C 0.30 6.32 7.66 -153.16 -1.17 5.15 16 5 N -0.64 -10.94 4.18 -11.46 -0.05 -10.99 16 6 C 0.51 8.23 6.24 -10.98 -0.07 8.17 16 7 O -0.50 -9.59 13.67 -13.74 -0.19 -9.77 16 8 C 0.08 0.99 3.91 -28.36 -0.11 0.88 16 9 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 10 O -0.35 -4.59 10.73 -54.53 -0.59 -5.17 16 11 C 0.06 0.57 7.46 37.05 0.28 0.85 16 12 C -0.17 -1.60 2.60 -89.88 -0.23 -1.84 16 13 H 0.10 1.23 8.07 -51.93 -0.42 0.82 16 14 C 0.08 0.67 6.73 36.37 0.24 0.91 16 15 O -0.39 -4.18 10.62 -35.23 -0.37 -4.55 16 16 C 0.07 0.68 6.85 37.71 0.26 0.93 16 17 C -0.15 -1.63 4.24 -27.02 -0.11 -1.75 16 18 C -0.13 -1.23 2.21 -90.29 -0.20 -1.43 16 19 H 0.10 0.78 7.96 -51.93 -0.41 0.37 16 20 N -0.34 -7.97 3.60 -61.57 -0.22 -8.19 16 21 C 0.26 6.28 6.01 -5.19 -0.03 6.25 16 22 C -0.54 -14.27 9.39 -34.44 -0.32 -14.59 16 23 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 24 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 25 N -0.89 -23.73 13.29 55.43 0.74 -23.00 16 26 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 29 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 30 N -0.28 -6.63 12.56 33.65 0.42 -6.21 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.16 3.28 5.83 -52.49 -0.31 2.98 16 35 H 0.41 6.49 6.38 -40.82 -0.26 6.23 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.38 8.00 -51.93 -0.42 -0.04 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.08 1.11 6.99 -51.93 -0.36 0.75 16 43 H 0.09 0.92 7.08 -51.93 -0.37 0.56 16 44 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.04 0.98 7.50 -51.93 -0.39 0.59 16 46 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -32.55 370.86 -8.57 -41.12 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.71 Total: 7.25 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.17 Total: -1.45 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.89 Total: -48.38 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -1.15 Total: -19.50 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.55 -8.57 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570607734.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.003 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds