Wall clock time and date at job start Tue Mar 31 2020 18:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39756 * 125.83453 * 2 1 4 4 C 1.36108 * 107.82674 * 179.79902 * 3 2 1 5 5 N 1.39470 * 126.21784 * 180.26703 * 4 3 2 6 6 C 1.34777 * 120.00397 * 0.13735 * 5 4 3 7 7 O 1.21292 * 119.99192 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00638 * 180.02562 * 6 5 4 9 9 H 1.09001 * 110.11750 * 303.32961 * 8 6 5 10 10 O 1.44657 * 110.14523 * 181.58481 * 8 6 5 11 11 C 1.45096 * 109.62749 * 237.40367 * 10 8 6 12 12 C 1.52781 * 103.55971 * 335.32563 * 11 10 8 13 13 H 1.08994 * 111.13976 * 284.51719 * 12 11 10 14 14 C 1.50934 * 118.61711 * 155.91036 * 12 11 10 15 15 O 1.43943 * 107.10664 * 186.50107 * 14 12 11 16 16 C 1.42313 * 117.14135 * 57.30465 * 15 14 12 17 17 C 1.54049 * 112.13177 * 306.91151 * 16 15 14 18 18 C 1.51368 * 106.51391 * 53.71140 * 17 16 15 19 19 H 1.08994 * 109.94944 * 57.10977 * 18 17 16 20 20 N 1.35260 * 107.56682 * 0.38646 * 4 3 2 21 21 C 1.46506 * 126.04862 * 179.88084 * 20 4 3 22 22 C 1.50702 * 109.46851 * 269.71545 * 21 20 4 23 23 H 1.07998 * 120.00221 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99982 * 180.02562 * 22 21 20 25 25 N 1.31510 * 120.00159 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99720 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46707 * 90.00158 * 26 24 22 28 28 H 1.48494 * 109.46712 * 210.00005 * 26 24 22 29 29 H 1.48496 * 109.47167 * 329.99997 * 26 24 22 30 30 N 1.30849 * 125.83942 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46804 * 269.97640 * 1 2 3 32 32 H 1.08993 * 109.47512 * 29.98280 * 1 2 3 33 33 H 1.08998 * 109.46788 * 149.98174 * 1 2 3 34 34 H 1.07996 * 126.08844 * 0.06712 * 3 2 1 35 35 H 0.97004 * 120.00278 * 180.14846 * 5 4 3 36 36 H 1.09004 * 110.60731 * 216.81043 * 11 10 8 37 37 H 1.09003 * 110.60588 * 93.84359 * 11 10 8 38 38 H 1.08994 * 110.07998 * 66.85340 * 14 12 11 39 39 H 1.09004 * 109.44316 * 305.78965 * 14 12 11 40 40 H 1.09004 * 108.95252 * 186.23116 * 16 15 14 41 41 H 1.09001 * 108.88295 * 67.54898 * 16 15 14 42 42 H 1.09002 * 110.03785 * 294.46538 * 17 16 15 43 43 H 1.08994 * 110.04358 * 172.96099 * 17 16 15 44 44 H 1.08994 * 109.46947 * 29.70966 * 21 20 4 45 45 H 1.08997 * 109.47271 * 149.71482 * 21 20 4 46 46 H 0.96998 * 120.00133 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 0.0045 5 7 4.7512 1.5276 0.0113 6 6 4.6156 2.8685 0.0167 7 8 3.5095 3.3661 0.0162 8 6 5.8382 3.7495 0.0235 9 1 6.4691 3.5088 0.8792 10 8 5.4486 5.1420 0.0661 11 6 6.0105 5.8404 -1.0749 12 6 7.2291 4.9971 -1.4465 13 1 8.0481 5.1597 -0.7459 14 6 7.7483 5.0615 -2.8623 15 8 8.7857 4.0704 -2.9783 16 6 8.4351 2.7250 -2.6747 17 6 7.7759 2.5958 -1.2883 18 6 6.6189 3.5717 -1.2694 19 1 5.9354 3.3541 -2.0900 20 7 3.6093 -0.6403 -0.0014 21 6 4.7871 -1.5115 -0.0019 22 6 5.1908 -1.8096 -1.4229 23 1 4.6262 -1.3923 -2.2435 24 6 6.2803 -2.6161 -1.6753 25 7 6.6323 -2.8767 -2.9153 26 14 7.2564 -3.3385 -0.2558 27 1 6.6820 -4.6553 0.1203 28 1 8.6720 -3.5154 -0.6680 29 1 7.1910 -2.4191 0.9085 30 7 2.2732 -1.0607 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.9901 2.1597 0.0010 35 1 5.6358 1.1296 0.0120 36 1 6.3132 6.8498 -0.7959 37 1 5.2967 5.8667 -1.8982 38 1 8.1532 6.0524 -3.0677 39 1 6.9381 4.8378 -3.5564 40 1 9.3353 2.1108 -2.6971 41 1 7.7404 2.3619 -3.4321 42 1 8.4931 2.8516 -0.5084 43 1 7.4098 1.5797 -1.1420 44 1 5.6085 -1.0122 0.5120 45 1 4.5501 -2.4433 0.5116 46 1 7.3990 -3.4437 -3.0929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570607735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:53 Heat of formation + Delta-G solvation = -37.994132 kcal Electronic energy + Delta-G solvation = -30271.729233 eV Core-core repulsion = 26163.627949 eV Total energy + Delta-G solvation = -4108.101283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41744 -40.66117 -38.98766 -37.64271 -34.91609 -33.88870 -33.40026 -32.24132 -32.08276 -29.89590 -29.32827 -27.93180 -26.36245 -25.92294 -24.03960 -22.86641 -22.36757 -21.07277 -20.81597 -19.80126 -19.31268 -17.34526 -17.25039 -16.96888 -16.52451 -16.22865 -15.97847 -15.51905 -15.46181 -15.09482 -14.86277 -14.42050 -14.15640 -13.95761 -13.80485 -13.44524 -13.40143 -13.15593 -12.81964 -12.75328 -12.58934 -12.33972 -11.94304 -11.86723 -11.64856 -11.61967 -11.35294 -11.19941 -10.93431 -10.89997 -10.70324 -10.54914 -10.30101 -10.28377 -9.85141 -9.84054 -9.80460 -9.37251 -8.92242 -8.00789 -7.54228 -6.39602 -4.44269 2.12235 2.51700 2.95844 3.03059 3.09084 3.13382 3.38852 3.48935 3.51044 3.68336 3.78415 4.08007 4.22321 4.37326 4.60332 4.67295 4.84080 4.86806 4.91662 5.01107 5.02591 5.16253 5.25790 5.33933 5.36431 5.44756 5.51560 5.56397 5.59895 5.70843 5.78433 5.94214 5.97775 6.00113 6.08734 6.16282 6.26116 6.30099 6.40563 6.61338 6.69368 7.02444 7.13751 7.39009 7.47687 7.71558 8.11027 8.23989 8.51991 8.66637 9.14945 10.72316 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008628 B = 0.005110 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.599596 B = 5477.972852 C = 8031.514259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.056 3.944 3 C -0.292 4.292 4 C 0.305 3.695 5 N -0.638 5.638 6 C 0.510 3.490 7 O -0.494 6.494 8 C 0.084 3.916 9 H 0.112 0.888 10 O -0.349 6.349 11 C 0.062 3.938 12 C -0.164 4.164 13 H 0.101 0.899 14 C 0.080 3.920 15 O -0.387 6.387 16 C 0.065 3.935 17 C -0.144 4.144 18 C -0.128 4.128 19 H 0.094 0.906 20 N -0.344 5.344 21 C 0.229 3.771 22 C -0.545 4.545 23 H 0.081 0.919 24 C 0.082 3.918 25 N -0.881 5.881 26 Si 0.870 3.130 27 H -0.269 1.269 28 H -0.279 1.279 29 H -0.265 1.265 30 N -0.282 5.282 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.163 0.837 35 H 0.413 0.587 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.038 0.962 45 H 0.051 0.949 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 15.270 3.987 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 C -0.324 4.324 4 C 0.083 3.917 5 N -0.287 5.287 6 C 0.295 3.705 7 O -0.365 6.365 8 C 0.023 3.977 9 H 0.129 0.871 10 O -0.267 6.267 11 C -0.014 4.014 12 C -0.183 4.183 13 H 0.119 0.881 14 C 0.004 3.996 15 O -0.305 6.305 16 C -0.011 4.011 17 C -0.182 4.182 18 C -0.147 4.147 19 H 0.112 0.888 20 N -0.129 5.129 21 C 0.110 3.890 22 C -0.584 4.584 23 H 0.100 0.900 24 C -0.123 4.123 25 N -0.518 5.518 26 Si 0.696 3.304 27 H -0.194 1.194 28 H -0.204 1.204 29 H -0.190 1.190 30 N -0.107 5.107 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.180 0.820 35 H 0.249 0.751 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.932 14.367 3.955 15.187 hybrid contribution 1.044 -0.245 0.500 1.184 sum 3.977 14.121 4.455 15.332 Atomic orbital electron populations 1.20038 0.87372 1.02638 1.02133 1.22057 0.96609 0.90918 1.01348 1.21294 0.89000 1.00552 1.21506 1.17888 0.88036 0.83039 1.02733 1.42733 1.08135 1.05451 1.72364 1.20749 0.91618 0.81380 0.76788 1.90654 1.26365 1.73515 1.45982 1.22042 0.92152 0.83620 0.99889 0.87081 1.89081 1.75144 1.17328 1.45124 1.23037 0.92967 0.95995 0.89417 1.23208 0.99247 0.95164 1.00682 0.88124 1.22126 0.91364 0.92772 0.93360 1.87767 1.37045 1.16748 1.88984 1.22602 1.01289 0.82618 0.94620 1.22057 0.96371 1.00188 0.99556 1.22420 0.97527 0.97196 0.97580 0.88820 1.48892 1.06204 1.01938 1.55838 1.19942 0.79284 0.90025 0.99738 1.21179 1.14210 1.32715 0.90262 0.90047 1.24804 0.96608 0.95163 0.95730 1.69866 1.26857 1.36485 1.18564 0.86951 0.80067 0.80831 0.82530 1.19428 1.20407 1.19026 1.77370 0.85766 1.21710 1.25862 0.91268 0.90997 0.91362 0.82006 0.75084 0.88520 0.91245 0.88128 0.92453 0.88028 0.92635 0.90043 0.89163 0.94424 0.93150 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 2 C 0.06 1.11 7.21 -82.44 -0.59 0.52 16 3 C -0.29 -5.95 9.58 -39.78 -0.38 -6.33 16 4 C 0.30 6.30 7.66 -153.16 -1.17 5.13 16 5 N -0.64 -10.81 5.39 -11.46 -0.06 -10.88 16 6 C 0.51 8.19 7.03 -10.99 -0.08 8.11 16 7 O -0.49 -9.48 13.67 -13.77 -0.19 -9.67 16 8 C 0.08 1.03 3.66 -28.35 -0.10 0.93 16 9 H 0.11 1.11 8.10 -51.93 -0.42 0.69 16 10 O -0.35 -4.56 10.73 -54.55 -0.59 -5.15 16 11 C 0.06 0.58 7.49 37.04 0.28 0.86 16 12 C -0.16 -1.45 2.66 -90.13 -0.24 -1.69 16 13 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 14 C 0.08 0.70 6.71 36.12 0.24 0.94 16 15 O -0.39 -4.31 10.63 -35.23 -0.37 -4.69 16 16 C 0.07 0.72 6.85 37.70 0.26 0.98 16 17 C -0.14 -1.48 5.94 -27.01 -0.16 -1.64 16 18 C -0.13 -1.39 1.79 -90.28 -0.16 -1.55 16 19 H 0.09 1.17 7.74 -51.93 -0.40 0.76 16 20 N -0.34 -7.77 3.60 -61.57 -0.22 -7.99 16 21 C 0.23 5.24 5.08 -5.19 -0.03 5.21 16 22 C -0.55 -14.40 9.94 -34.44 -0.34 -14.75 16 23 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 24 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 25 N -0.88 -24.72 13.96 55.43 0.77 -23.94 16 26 Si 0.87 18.91 27.47 -169.99 -4.67 14.24 16 27 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 28 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 29 H -0.27 -5.32 6.54 56.52 0.37 -4.95 16 30 N -0.28 -6.42 12.56 33.65 0.42 -6.00 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.16 3.26 5.83 -52.49 -0.31 2.95 16 35 H 0.41 6.23 7.07 -40.82 -0.29 5.95 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.50 8.02 -51.93 -0.42 0.09 16 40 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 43 H 0.09 1.02 7.25 -51.93 -0.38 0.64 16 44 H 0.04 0.78 6.55 -51.93 -0.34 0.44 16 45 H 0.05 1.16 7.57 -51.93 -0.39 0.77 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -33.19 372.11 -8.26 -41.44 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -6.76 Total: 8.82 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.20 Total: -1.79 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.91 Total: -48.81 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -1.15 Total: -19.51 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.67 Total: 14.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.19 -8.26 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570607735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.448 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds