Wall clock time and date at job start Tue Mar 31 2020 18:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39756 * 125.83453 * 2 1 4 4 C 1.36108 * 107.82674 * 179.79902 * 3 2 1 5 5 N 1.39470 * 126.21784 * 180.26703 * 4 3 2 6 6 C 1.34777 * 120.00397 * 0.13735 * 5 4 3 7 7 O 1.21292 * 119.99192 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00638 * 180.02562 * 6 5 4 9 9 H 1.09001 * 110.11750 * 303.32961 * 8 6 5 10 10 O 1.44657 * 110.14523 * 181.58481 * 8 6 5 11 11 C 1.45096 * 109.62749 * 237.40367 * 10 8 6 12 12 C 1.52781 * 103.55971 * 335.32563 * 11 10 8 13 13 H 1.08994 * 111.13976 * 284.51719 * 12 11 10 14 14 C 1.50934 * 118.61711 * 155.91036 * 12 11 10 15 15 O 1.43943 * 107.10664 * 186.50107 * 14 12 11 16 16 C 1.42313 * 117.14135 * 57.30465 * 15 14 12 17 17 C 1.54049 * 112.13177 * 306.91151 * 16 15 14 18 18 C 1.51368 * 106.51391 * 53.71140 * 17 16 15 19 19 H 1.08994 * 109.94944 * 57.10977 * 18 17 16 20 20 N 1.35260 * 107.56682 * 0.38646 * 4 3 2 21 21 C 1.46506 * 126.04862 * 179.88084 * 20 4 3 22 22 C 1.50702 * 109.46851 * 269.71545 * 21 20 4 23 23 H 1.07998 * 120.00221 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99982 * 180.02562 * 22 21 20 25 25 N 1.31510 * 120.00159 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99720 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46707 * 90.00158 * 26 24 22 28 28 H 1.48494 * 109.46712 * 210.00005 * 26 24 22 29 29 H 1.48496 * 109.47167 * 329.99997 * 26 24 22 30 30 N 1.30849 * 125.83942 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.46804 * 269.97640 * 1 2 3 32 32 H 1.08993 * 109.47512 * 29.98280 * 1 2 3 33 33 H 1.08998 * 109.46788 * 149.98174 * 1 2 3 34 34 H 1.07996 * 126.08844 * 0.06712 * 3 2 1 35 35 H 0.97004 * 120.00278 * 180.14846 * 5 4 3 36 36 H 1.09004 * 110.60731 * 216.81043 * 11 10 8 37 37 H 1.09003 * 110.60588 * 93.84359 * 11 10 8 38 38 H 1.08994 * 110.07998 * 66.85340 * 14 12 11 39 39 H 1.09004 * 109.44316 * 305.78965 * 14 12 11 40 40 H 1.09004 * 108.95252 * 186.23116 * 16 15 14 41 41 H 1.09001 * 108.88295 * 67.54898 * 16 15 14 42 42 H 1.09002 * 110.03785 * 294.46538 * 17 16 15 43 43 H 1.08994 * 110.04358 * 172.96099 * 17 16 15 44 44 H 1.08994 * 109.46947 * 29.70966 * 21 20 4 45 45 H 1.08997 * 109.47271 * 149.71482 * 21 20 4 46 46 H 0.96998 * 120.00133 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 0.0045 5 7 4.7512 1.5276 0.0113 6 6 4.6156 2.8685 0.0167 7 8 3.5095 3.3661 0.0162 8 6 5.8382 3.7495 0.0235 9 1 6.4691 3.5088 0.8792 10 8 5.4486 5.1420 0.0661 11 6 6.0105 5.8404 -1.0749 12 6 7.2291 4.9971 -1.4465 13 1 8.0481 5.1597 -0.7459 14 6 7.7483 5.0615 -2.8623 15 8 8.7857 4.0704 -2.9783 16 6 8.4351 2.7250 -2.6747 17 6 7.7759 2.5958 -1.2883 18 6 6.6189 3.5717 -1.2694 19 1 5.9354 3.3541 -2.0900 20 7 3.6093 -0.6403 -0.0014 21 6 4.7871 -1.5115 -0.0019 22 6 5.1908 -1.8096 -1.4229 23 1 4.6262 -1.3923 -2.2435 24 6 6.2803 -2.6161 -1.6753 25 7 6.6323 -2.8767 -2.9153 26 14 7.2564 -3.3385 -0.2558 27 1 6.6820 -4.6553 0.1203 28 1 8.6720 -3.5154 -0.6680 29 1 7.1910 -2.4191 0.9085 30 7 2.2732 -1.0607 -0.0005 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5141 34 1 1.9901 2.1597 0.0010 35 1 5.6358 1.1296 0.0120 36 1 6.3132 6.8498 -0.7959 37 1 5.2967 5.8667 -1.8982 38 1 8.1532 6.0524 -3.0677 39 1 6.9381 4.8378 -3.5564 40 1 9.3353 2.1108 -2.6971 41 1 7.7404 2.3619 -3.4321 42 1 8.4931 2.8516 -0.5084 43 1 7.4098 1.5797 -1.1420 44 1 5.6085 -1.0122 0.5120 45 1 4.5501 -2.4433 0.5116 46 1 7.3990 -3.4437 -3.0929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570607735.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:52 Heat of formation + Delta-G solvation = -60.726673 kcal Electronic energy + Delta-G solvation = -30272.714990 eV Core-core repulsion = 26163.627949 eV Total energy + Delta-G solvation = -4109.087040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.67658 -41.91070 -40.24013 -38.58734 -36.39883 -35.63264 -34.40763 -33.96514 -32.93700 -31.30522 -30.68237 -29.28872 -28.04006 -26.72346 -25.09471 -24.37864 -23.60355 -22.31814 -21.64208 -21.31544 -20.69902 -19.26998 -18.63966 -18.31387 -17.47897 -17.17079 -17.01935 -16.70873 -16.60231 -16.35128 -16.14383 -15.92165 -15.46609 -15.32788 -14.89094 -14.72351 -14.51779 -14.31522 -14.23224 -14.13528 -13.80457 -13.58285 -13.54759 -13.18900 -12.95034 -12.60520 -12.51681 -12.40355 -12.22975 -12.14851 -11.87463 -11.82062 -11.77092 -11.67413 -11.40119 -11.11670 -10.93094 -10.69673 -10.58033 -9.66575 -9.15148 -8.42380 -6.55206 0.66039 1.12740 1.33239 1.36856 1.45079 1.50262 1.95367 2.01118 2.23607 2.62679 2.76497 2.88665 2.89062 3.19160 3.53327 3.61261 3.73551 3.84677 3.99579 4.14551 4.16766 4.20721 4.23639 4.40590 4.42407 4.52303 4.57333 4.58326 4.61830 4.69856 4.74061 4.77448 4.79904 4.86285 4.89693 4.95846 4.97621 5.08957 5.14439 5.16315 5.18908 5.53423 5.83761 5.92811 6.11180 6.21814 6.28960 6.48422 6.82865 6.92428 7.09459 8.73558 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008628 B = 0.005110 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3244.599596 B = 5477.972852 C = 8031.514259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.062 3.938 3 C -0.308 4.308 4 C 0.301 3.699 5 N -0.632 5.632 6 C 0.508 3.492 7 O -0.528 6.528 8 C 0.094 3.906 9 H 0.144 0.856 10 O -0.371 6.371 11 C 0.059 3.941 12 C -0.147 4.147 13 H 0.117 0.883 14 C 0.076 3.924 15 O -0.396 6.396 16 C 0.065 3.935 17 C -0.139 4.139 18 C -0.128 4.128 19 H 0.068 0.932 20 N -0.364 5.364 21 C 0.237 3.763 22 C -0.552 4.552 23 H 0.022 0.978 24 C 0.030 3.970 25 N -0.930 5.930 26 Si 0.944 3.056 27 H -0.271 1.271 28 H -0.271 1.271 29 H -0.231 1.231 30 N -0.325 5.325 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.164 0.836 35 H 0.421 0.579 36 H 0.127 0.873 37 H 0.063 0.937 38 H 0.129 0.871 39 H 0.050 0.950 40 H 0.108 0.892 41 H 0.033 0.967 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 16.634 6.211 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C -0.340 4.340 4 C 0.079 3.921 5 N -0.282 5.282 6 C 0.295 3.705 7 O -0.401 6.401 8 C 0.033 3.967 9 H 0.161 0.839 10 O -0.289 6.289 11 C -0.017 4.017 12 C -0.165 4.165 13 H 0.135 0.865 14 C 0.000 4.000 15 O -0.315 6.315 16 C -0.012 4.012 17 C -0.176 4.176 18 C -0.147 4.147 19 H 0.086 0.914 20 N -0.149 5.149 21 C 0.117 3.883 22 C -0.591 4.591 23 H 0.041 0.959 24 C -0.170 4.170 25 N -0.568 5.568 26 Si 0.765 3.235 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.154 1.154 30 N -0.150 5.150 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.182 0.818 35 H 0.259 0.741 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.051 0.949 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.525 15.763 6.180 17.525 hybrid contribution 0.432 -0.567 -0.336 0.788 sum 4.957 15.196 5.843 17.019 Atomic orbital electron populations 1.20239 0.83865 1.03853 1.04063 1.22874 0.98782 0.89951 0.98749 1.21477 0.89307 1.00793 1.22373 1.18259 0.89462 0.82826 1.01545 1.42869 1.07580 1.05632 1.72147 1.21675 0.92638 0.81055 0.75128 1.90624 1.28136 1.73913 1.47460 1.22119 0.90155 0.82819 1.01631 0.83926 1.89066 1.75955 1.17432 1.46446 1.23252 0.92841 0.97108 0.88490 1.23142 0.99285 0.93084 1.01033 0.86457 1.22321 0.91054 0.93410 0.93214 1.87755 1.37905 1.16777 1.89105 1.22575 1.01114 0.83021 0.94504 1.22032 0.96488 0.99297 0.99816 1.22357 0.97247 0.99084 0.96050 0.91356 1.48835 1.06175 1.02537 1.57350 1.19800 0.80409 0.90715 0.97373 1.21155 1.14091 1.33069 0.90738 0.95939 1.25741 0.97467 0.95029 0.98808 1.70020 1.27805 1.37492 1.21455 0.85786 0.78132 0.80081 0.79485 1.19627 1.19552 1.15388 1.77311 0.86240 1.23325 1.28121 0.88845 0.89051 0.90834 0.81845 0.74088 0.85547 0.91863 0.85359 0.93188 0.87366 0.94852 0.87465 0.90501 0.91395 0.93124 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.24 0.74 -1.00 16 2 C 0.06 2.47 7.21 43.07 0.31 2.78 16 3 C -0.31 -12.73 9.58 22.14 0.21 -12.52 16 4 C 0.30 12.64 7.66 131.32 1.01 13.64 16 5 N -0.63 -21.45 5.39 -308.57 -1.66 -23.11 16 6 C 0.51 16.19 7.03 87.66 0.62 16.81 16 7 O -0.53 -20.44 13.67 15.41 0.21 -20.23 16 8 C 0.09 2.14 3.66 29.54 0.11 2.25 16 9 H 0.14 2.39 8.10 -2.39 -0.02 2.37 16 10 O -0.37 -9.00 10.73 -130.51 -1.40 -10.40 16 11 C 0.06 0.97 7.49 71.91 0.54 1.51 16 12 C -0.15 -2.23 2.66 -10.48 -0.03 -2.26 16 13 H 0.12 1.48 8.09 -2.39 -0.02 1.47 16 14 C 0.08 1.18 6.71 71.31 0.48 1.66 16 15 O -0.40 -8.24 10.63 -148.98 -1.58 -9.83 16 16 C 0.06 1.39 6.85 72.34 0.50 1.89 16 17 C -0.14 -2.66 5.94 30.41 0.18 -2.48 16 18 C -0.13 -2.63 1.79 -10.57 -0.02 -2.65 16 19 H 0.07 1.75 7.74 -2.39 -0.02 1.73 16 20 N -0.36 -16.73 3.60 -348.71 -1.26 -17.98 16 21 C 0.24 10.80 5.08 85.63 0.43 11.23 16 22 C -0.55 -30.16 9.94 25.60 0.25 -29.91 16 23 H 0.02 1.45 8.06 -2.91 -0.02 1.43 16 24 C 0.03 1.61 5.47 84.66 0.46 2.08 16 25 N -0.93 -53.72 13.96 21.45 0.30 -53.42 16 26 Si 0.94 38.12 27.47 68.60 1.88 40.00 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 29 H -0.23 -8.01 6.54 99.48 0.65 -7.35 16 30 N -0.33 -15.08 12.56 -47.45 -0.60 -15.68 16 31 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.16 6.69 5.83 -2.91 -0.02 6.67 16 35 H 0.42 12.50 7.07 -92.70 -0.66 11.85 16 36 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 0.85 8.02 -2.38 -0.02 0.83 16 40 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.11 1.53 8.10 -2.39 -0.02 1.51 16 43 H 0.08 1.69 7.25 -2.39 -0.02 1.67 16 44 H 0.07 2.66 6.55 -2.39 -0.02 2.65 16 45 H 0.05 2.30 7.57 -2.39 -0.02 2.28 16 46 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -75.82 372.11 1.99 -73.83 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.30 Total: 33.79 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.80 Total: 3.03 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -3.22 Total: -110.19 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -2.77 Total: -40.46 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 1.88 Total: 40.00 kcal Total: -75.82 1.99 -73.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570607735.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.106 kcal (2) G-P(sol) polarization free energy of solvation -75.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds