Wall clock time and date at job start Tue Mar 31 2020 18:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39755 * 125.83835 * 2 1 4 4 C 1.36112 * 107.82671 * 180.14079 * 3 2 1 5 5 N 1.39471 * 126.21625 * 179.90383 * 4 3 2 6 6 C 1.34777 * 120.00174 * 359.68688 * 5 4 3 7 7 O 1.21299 * 119.99797 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00323 * 179.97438 * 6 5 4 9 9 H 1.09000 * 110.31913 * 302.78625 * 8 6 5 10 10 O 1.43802 * 110.45010 * 180.50968 * 8 6 5 11 11 C 1.41633 * 109.57959 * 216.00757 * 10 8 6 12 12 C 1.53484 * 107.99348 * 1.60866 * 11 10 8 13 13 H 1.09002 * 109.53537 * 266.30152 * 12 11 10 14 14 C 1.51101 * 112.65900 * 144.09446 * 12 11 10 15 15 O 1.42698 * 111.61684 * 293.07338 * 14 12 11 16 16 C 1.43226 * 112.64979 * 299.77124 * 15 14 12 17 17 C 1.52747 * 108.36162 * 65.26927 * 16 15 14 18 18 C 1.51675 * 110.82736 * 300.53487 * 17 16 15 19 19 H 1.09002 * 111.85546 * 282.60848 * 18 17 16 20 20 N 1.35257 * 107.56792 * 359.63724 * 4 3 2 21 21 C 1.46503 * 126.04845 * 180.23111 * 20 4 3 22 22 C 1.50696 * 109.47193 * 89.99874 * 21 20 4 23 23 H 1.08002 * 120.00379 * 0.02562 * 22 21 20 24 24 C 1.37885 * 120.00019 * 180.02562 * 22 21 20 25 25 N 1.31511 * 119.99813 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99622 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47243 * 90.00233 * 26 24 22 28 28 H 1.48507 * 109.46780 * 209.99839 * 26 24 22 29 29 H 1.48499 * 109.47386 * 329.99563 * 26 24 22 30 30 N 1.30855 * 125.83974 * 179.73397 * 2 1 3 31 31 H 1.08990 * 109.47549 * 270.23757 * 1 2 3 32 32 H 1.09002 * 109.47089 * 30.24254 * 1 2 3 33 33 H 1.09005 * 109.47099 * 150.23759 * 1 2 3 34 34 H 1.08000 * 126.08755 * 0.02580 * 3 2 1 35 35 H 0.97001 * 120.00431 * 179.67801 * 5 4 3 36 36 H 1.09000 * 109.29882 * 242.00383 * 11 10 8 37 37 H 1.08997 * 109.62208 * 121.40215 * 11 10 8 38 38 H 1.09007 * 109.05190 * 53.62682 * 14 12 11 39 39 H 1.09005 * 109.05041 * 172.52065 * 14 12 11 40 40 H 1.09006 * 109.68712 * 184.98037 * 16 15 14 41 41 H 1.08996 * 109.68828 * 305.50867 * 16 15 14 42 42 H 1.09001 * 109.27123 * 60.23629 * 17 16 15 43 43 H 1.08999 * 109.26763 * 179.73751 * 17 16 15 44 44 H 1.09005 * 109.47279 * 210.00243 * 21 20 4 45 45 H 1.09006 * 109.46639 * 329.99788 * 21 20 4 46 46 H 0.97002 * 119.99773 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7121 -0.0032 5 7 4.7512 1.5274 -0.0062 6 6 4.6157 2.8683 -0.0124 7 8 3.5096 3.3661 -0.0159 8 6 5.8384 3.7493 -0.0150 9 1 6.4681 3.5254 0.8460 10 8 5.4583 5.1361 -0.0098 11 6 6.3708 5.8813 -0.7960 12 6 7.3966 4.9038 -1.3861 13 1 8.2697 4.8550 -0.7354 14 6 7.8276 5.2854 -2.7831 15 8 6.7558 5.1597 -3.7167 16 6 6.2493 3.8224 -3.7981 17 6 5.6188 3.4641 -2.4538 18 6 6.6402 3.5594 -1.3366 19 1 7.3085 2.6984 -1.3233 20 7 3.6092 -0.6404 0.0031 21 6 4.7870 -1.5117 0.0072 22 6 5.1908 -1.8038 1.4293 23 1 4.6263 -1.3830 2.2483 24 6 6.2809 -2.6084 1.6851 25 7 6.6329 -2.8638 2.9262 26 14 7.2577 -3.3357 0.2686 27 1 8.3486 -2.4024 -0.1111 28 1 7.8414 -4.6359 0.6859 29 1 6.3596 -3.5470 -0.8950 30 7 2.2732 -1.0608 0.0049 31 1 -0.3634 0.0043 1.0275 32 1 -0.3633 0.8878 -0.5176 33 1 -0.3633 -0.8921 -0.5102 34 1 1.9902 2.1597 0.0004 35 1 5.6358 1.1294 -0.0036 36 1 6.8748 6.6139 -0.1657 37 1 5.8343 6.3871 -1.5987 38 1 8.1760 6.3183 -2.7783 39 1 8.6470 4.6364 -3.0924 40 1 5.4967 3.7621 -4.5844 41 1 7.0650 3.1335 -4.0171 42 1 4.8048 4.1573 -2.2420 43 1 5.2238 2.4493 -2.5010 44 1 4.5499 -2.4456 -0.5024 45 1 5.6084 -1.0145 -0.5090 46 1 7.4001 -3.4295 3.1061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570607736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:56 Heat of formation + Delta-G solvation = -39.778136 kcal Electronic energy + Delta-G solvation = -30247.009072 eV Core-core repulsion = 26138.830429 eV Total energy + Delta-G solvation = -4108.178643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63513 -40.72328 -38.99211 -37.78133 -34.88359 -33.87749 -33.45112 -32.31803 -32.16989 -29.89395 -29.31998 -27.94409 -26.35037 -25.83290 -24.22212 -23.57594 -22.49553 -21.11103 -20.11837 -19.69327 -19.24642 -17.34818 -17.26857 -17.17888 -16.64933 -16.48622 -16.21758 -15.69289 -15.38874 -15.16704 -14.86288 -14.52712 -14.16054 -13.87112 -13.67561 -13.46127 -13.18299 -12.93859 -12.76819 -12.70189 -12.62463 -12.50764 -12.31589 -12.01686 -11.92505 -11.81558 -11.38091 -11.19275 -11.03514 -10.88481 -10.62588 -10.50101 -10.27414 -10.16813 -9.90963 -9.80770 -9.75294 -9.41284 -8.91316 -7.99844 -7.53234 -6.37971 -4.42590 2.13540 2.48447 2.98745 3.00781 3.11910 3.12917 3.44663 3.50521 3.54225 3.72884 3.79532 4.09116 4.20557 4.34192 4.57386 4.60070 4.69538 4.87914 4.88999 4.89753 5.02296 5.14364 5.19186 5.24591 5.26814 5.26931 5.46177 5.47905 5.56586 5.65635 5.72990 5.97442 5.98973 6.00804 6.08674 6.17777 6.25654 6.32307 6.57104 6.67986 6.72225 6.77421 7.15386 7.39848 7.48474 7.72896 8.12478 8.25209 8.53017 8.68930 9.16402 10.74272 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009936 B = 0.004208 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.299858 B = 6653.173969 C = 8221.449917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.056 3.944 3 C -0.291 4.291 4 C 0.306 3.694 5 N -0.638 5.638 6 C 0.523 3.477 7 O -0.491 6.491 8 C 0.071 3.929 9 H 0.105 0.895 10 O -0.343 6.343 11 C 0.058 3.942 12 C -0.153 4.153 13 H 0.097 0.903 14 C 0.072 3.928 15 O -0.374 6.374 16 C 0.063 3.937 17 C -0.164 4.164 18 C -0.110 4.110 19 H 0.111 0.889 20 N -0.344 5.344 21 C 0.231 3.769 22 C -0.546 4.546 23 H 0.082 0.918 24 C 0.081 3.919 25 N -0.882 5.882 26 Si 0.871 3.129 27 H -0.272 1.272 28 H -0.278 1.278 29 H -0.263 1.263 30 N -0.282 5.282 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.163 0.837 35 H 0.414 0.586 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.098 0.902 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.055 0.945 45 H 0.034 0.966 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 15.129 -11.900 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 C -0.323 4.323 4 C 0.084 3.916 5 N -0.287 5.287 6 C 0.308 3.692 7 O -0.362 6.362 8 C 0.010 3.990 9 H 0.123 0.877 10 O -0.260 6.260 11 C -0.019 4.019 12 C -0.172 4.172 13 H 0.116 0.884 14 C -0.005 4.005 15 O -0.292 6.292 16 C -0.014 4.014 17 C -0.201 4.201 18 C -0.129 4.129 19 H 0.129 0.871 20 N -0.129 5.129 21 C 0.111 3.889 22 C -0.584 4.584 23 H 0.100 0.900 24 C -0.124 4.124 25 N -0.518 5.518 26 Si 0.696 3.304 27 H -0.197 1.197 28 H -0.203 1.203 29 H -0.187 1.187 30 N -0.107 5.107 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.180 0.820 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.082 14.341 -11.770 18.806 hybrid contribution 1.654 -0.316 -0.207 1.696 sum 4.736 14.025 -11.977 19.041 Atomic orbital electron populations 1.20039 0.87387 1.02395 1.02371 1.22057 0.96604 0.90933 1.01337 1.21297 0.88994 1.00558 1.21455 1.17861 0.87965 0.83024 1.02765 1.42658 1.08192 1.05310 1.72550 1.20194 0.91078 0.81266 0.76649 1.90670 1.26258 1.73437 1.45878 1.22997 0.92807 0.83793 0.99386 0.87712 1.88326 1.51674 1.15634 1.70415 1.22773 0.90385 0.93920 0.94812 1.22634 1.00113 0.94972 0.99466 0.88446 1.21913 0.89342 1.02559 0.86706 1.88132 1.51727 1.28845 1.60529 1.22569 0.98268 0.83734 0.96830 1.22048 0.99068 1.04045 0.94970 1.22613 0.97096 0.98863 0.94301 0.87125 1.48890 1.06214 1.01923 1.55843 1.19922 0.79236 0.90038 0.99672 1.21202 1.14220 1.32699 0.90325 0.90028 1.24824 0.96641 0.95202 0.95751 1.69871 1.26764 1.36666 1.18540 0.86937 0.80733 0.79813 0.82868 1.19717 1.20305 1.18739 1.77373 0.85740 1.21701 1.25875 0.91111 0.91033 0.91489 0.81978 0.75009 0.90976 0.90390 0.88381 0.92499 0.88355 0.92638 0.89452 0.90078 0.92734 0.94876 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.55 16 2 C 0.06 1.10 7.21 -82.44 -0.59 0.51 16 3 C -0.29 -5.89 9.58 -39.78 -0.38 -6.27 16 4 C 0.31 6.23 7.66 -153.16 -1.17 5.05 16 5 N -0.64 -10.61 5.30 -11.46 -0.06 -10.67 16 6 C 0.52 8.28 5.31 -10.99 -0.06 8.22 16 7 O -0.49 -9.35 13.67 -13.71 -0.19 -9.54 16 8 C 0.07 0.87 3.53 -26.42 -0.09 0.77 16 9 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 10 O -0.34 -4.60 10.21 -54.44 -0.56 -5.16 16 11 C 0.06 0.56 6.79 37.41 0.25 0.81 16 12 C -0.15 -1.18 2.98 -90.62 -0.27 -1.45 16 13 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 14 C 0.07 0.51 6.10 36.20 0.22 0.73 16 15 O -0.37 -3.65 10.58 -35.23 -0.37 -4.02 16 16 C 0.06 0.56 6.83 37.03 0.25 0.81 16 17 C -0.16 -1.73 4.11 -27.53 -0.11 -1.84 16 18 C -0.11 -1.02 3.53 -89.13 -0.31 -1.34 16 19 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 20 N -0.34 -7.72 3.60 -61.57 -0.22 -7.94 16 21 C 0.23 5.26 5.07 -5.19 -0.03 5.23 16 22 C -0.55 -14.65 9.94 -34.44 -0.34 -14.99 16 23 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 24 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 25 N -0.88 -25.27 13.96 55.43 0.77 -24.49 16 26 Si 0.87 19.01 27.47 -169.99 -4.67 14.34 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 29 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 30 N -0.28 -6.40 12.56 33.65 0.42 -5.97 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.16 3.25 5.83 -52.49 -0.31 2.94 16 35 H 0.41 6.09 7.96 -40.82 -0.33 5.76 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 38 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.43 8.11 -51.93 -0.42 0.00 16 42 H 0.09 1.15 6.93 -51.93 -0.36 0.79 16 43 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 44 H 0.05 1.27 7.20 -51.93 -0.37 0.90 16 45 H 0.03 0.67 6.93 -51.93 -0.36 0.31 16 46 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -33.91 368.81 -8.44 -42.35 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.76 Total: 7.80 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -2.36 Total: -2.25 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.91 Total: -49.08 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -1.12 Total: -18.72 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.67 Total: 14.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.91 -8.44 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570607736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.569 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds