Wall clock time and date at job start Tue Mar 31 2020 18:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39755 * 125.83835 * 2 1 4 4 C 1.36112 * 107.82671 * 180.14079 * 3 2 1 5 5 N 1.39471 * 126.21625 * 179.90383 * 4 3 2 6 6 C 1.34777 * 120.00174 * 359.68688 * 5 4 3 7 7 O 1.21299 * 119.99797 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00323 * 179.97438 * 6 5 4 9 9 H 1.09000 * 110.31913 * 302.78625 * 8 6 5 10 10 O 1.43802 * 110.45010 * 180.50968 * 8 6 5 11 11 C 1.41633 * 109.57959 * 216.00757 * 10 8 6 12 12 C 1.53484 * 107.99348 * 1.60866 * 11 10 8 13 13 H 1.09002 * 109.53537 * 266.30152 * 12 11 10 14 14 C 1.51101 * 112.65900 * 144.09446 * 12 11 10 15 15 O 1.42698 * 111.61684 * 293.07338 * 14 12 11 16 16 C 1.43226 * 112.64979 * 299.77124 * 15 14 12 17 17 C 1.52747 * 108.36162 * 65.26927 * 16 15 14 18 18 C 1.51675 * 110.82736 * 300.53487 * 17 16 15 19 19 H 1.09002 * 111.85546 * 282.60848 * 18 17 16 20 20 N 1.35257 * 107.56792 * 359.63724 * 4 3 2 21 21 C 1.46503 * 126.04845 * 180.23111 * 20 4 3 22 22 C 1.50696 * 109.47193 * 89.99874 * 21 20 4 23 23 H 1.08002 * 120.00379 * 0.02562 * 22 21 20 24 24 C 1.37885 * 120.00019 * 180.02562 * 22 21 20 25 25 N 1.31511 * 119.99813 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99622 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47243 * 90.00233 * 26 24 22 28 28 H 1.48507 * 109.46780 * 209.99839 * 26 24 22 29 29 H 1.48499 * 109.47386 * 329.99563 * 26 24 22 30 30 N 1.30855 * 125.83974 * 179.73397 * 2 1 3 31 31 H 1.08990 * 109.47549 * 270.23757 * 1 2 3 32 32 H 1.09002 * 109.47089 * 30.24254 * 1 2 3 33 33 H 1.09005 * 109.47099 * 150.23759 * 1 2 3 34 34 H 1.08000 * 126.08755 * 0.02580 * 3 2 1 35 35 H 0.97001 * 120.00431 * 179.67801 * 5 4 3 36 36 H 1.09000 * 109.29882 * 242.00383 * 11 10 8 37 37 H 1.08997 * 109.62208 * 121.40215 * 11 10 8 38 38 H 1.09007 * 109.05190 * 53.62682 * 14 12 11 39 39 H 1.09005 * 109.05041 * 172.52065 * 14 12 11 40 40 H 1.09006 * 109.68712 * 184.98037 * 16 15 14 41 41 H 1.08996 * 109.68828 * 305.50867 * 16 15 14 42 42 H 1.09001 * 109.27123 * 60.23629 * 17 16 15 43 43 H 1.08999 * 109.26763 * 179.73751 * 17 16 15 44 44 H 1.09005 * 109.47279 * 210.00243 * 21 20 4 45 45 H 1.09006 * 109.46639 * 329.99788 * 21 20 4 46 46 H 0.97002 * 119.99773 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7121 -0.0032 5 7 4.7512 1.5274 -0.0062 6 6 4.6157 2.8683 -0.0124 7 8 3.5096 3.3661 -0.0159 8 6 5.8384 3.7493 -0.0150 9 1 6.4681 3.5254 0.8460 10 8 5.4583 5.1361 -0.0098 11 6 6.3708 5.8813 -0.7960 12 6 7.3966 4.9038 -1.3861 13 1 8.2697 4.8550 -0.7354 14 6 7.8276 5.2854 -2.7831 15 8 6.7558 5.1597 -3.7167 16 6 6.2493 3.8224 -3.7981 17 6 5.6188 3.4641 -2.4538 18 6 6.6402 3.5594 -1.3366 19 1 7.3085 2.6984 -1.3233 20 7 3.6092 -0.6404 0.0031 21 6 4.7870 -1.5117 0.0072 22 6 5.1908 -1.8038 1.4293 23 1 4.6263 -1.3830 2.2483 24 6 6.2809 -2.6084 1.6851 25 7 6.6329 -2.8638 2.9262 26 14 7.2577 -3.3357 0.2686 27 1 8.3486 -2.4024 -0.1111 28 1 7.8414 -4.6359 0.6859 29 1 6.3596 -3.5470 -0.8950 30 7 2.2732 -1.0608 0.0049 31 1 -0.3634 0.0043 1.0275 32 1 -0.3633 0.8878 -0.5176 33 1 -0.3633 -0.8921 -0.5102 34 1 1.9902 2.1597 0.0004 35 1 5.6358 1.1294 -0.0036 36 1 6.8748 6.6139 -0.1657 37 1 5.8343 6.3871 -1.5987 38 1 8.1760 6.3183 -2.7783 39 1 8.6470 4.6364 -3.0924 40 1 5.4967 3.7621 -4.5844 41 1 7.0650 3.1335 -4.0171 42 1 4.8048 4.1573 -2.2420 43 1 5.2238 2.4493 -2.5010 44 1 4.5499 -2.4456 -0.5024 45 1 5.6084 -1.0145 -0.5090 46 1 7.4001 -3.4295 3.1061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570607736.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:55 Heat of formation + Delta-G solvation = -63.679348 kcal Electronic energy + Delta-G solvation = -30248.045507 eV Core-core repulsion = 26138.830429 eV Total energy + Delta-G solvation = -4109.215078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.74422 -42.02566 -40.20405 -38.62606 -36.36529 -35.61137 -34.38699 -33.95506 -32.98950 -31.28737 -30.64036 -29.26956 -28.03470 -26.49452 -25.18070 -24.52156 -24.16812 -22.40238 -21.39245 -20.68481 -20.58145 -19.26651 -18.62345 -18.21046 -17.67762 -17.47353 -17.15763 -16.68979 -16.46179 -16.33151 -16.13403 -15.97588 -15.52627 -15.25855 -14.91612 -14.52908 -14.39473 -14.23629 -14.17538 -13.85488 -13.70702 -13.54229 -13.43416 -13.21312 -13.16512 -12.93170 -12.67292 -12.54026 -12.17490 -12.13280 -11.87713 -11.80201 -11.79396 -11.46658 -11.24284 -11.01026 -10.91163 -10.60661 -10.51992 -9.65110 -9.12920 -8.42170 -6.55425 0.69068 1.12338 1.32550 1.38718 1.47999 1.53830 1.97847 2.03450 2.25180 2.77004 2.89227 2.94612 3.04720 3.25076 3.56549 3.73138 3.75491 3.90908 3.98416 4.13655 4.16129 4.22860 4.31668 4.42981 4.47053 4.55288 4.56577 4.63024 4.65016 4.70334 4.74273 4.80687 4.82109 4.85737 4.90665 4.97856 5.05846 5.10937 5.16865 5.18132 5.20052 5.80479 5.85176 5.94101 6.14472 6.17812 6.31532 6.49170 6.86359 6.94729 7.09676 8.74338 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009936 B = 0.004208 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.299858 B = 6653.173969 C = 8221.449917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.061 3.939 3 C -0.309 4.309 4 C 0.305 3.695 5 N -0.631 5.631 6 C 0.523 3.477 7 O -0.528 6.528 8 C 0.073 3.927 9 H 0.127 0.873 10 O -0.374 6.374 11 C 0.051 3.949 12 C -0.142 4.142 13 H 0.127 0.873 14 C 0.066 3.934 15 O -0.394 6.394 16 C 0.065 3.935 17 C -0.159 4.159 18 C -0.104 4.104 19 H 0.139 0.861 20 N -0.363 5.363 21 C 0.239 3.761 22 C -0.555 4.555 23 H 0.020 0.980 24 C 0.026 3.974 25 N -0.935 5.935 26 Si 0.949 3.051 27 H -0.240 1.240 28 H -0.282 1.282 29 H -0.247 1.247 30 N -0.325 5.325 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.162 0.838 35 H 0.423 0.577 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.332 15.614 -14.084 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 C -0.340 4.340 4 C 0.083 3.917 5 N -0.281 5.281 6 C 0.310 3.690 7 O -0.402 6.402 8 C 0.012 3.988 9 H 0.145 0.855 10 O -0.293 6.293 11 C -0.025 4.025 12 C -0.160 4.160 13 H 0.145 0.855 14 C -0.010 4.010 15 O -0.313 6.313 16 C -0.011 4.011 17 C -0.197 4.197 18 C -0.123 4.123 19 H 0.157 0.843 20 N -0.148 5.148 21 C 0.119 3.881 22 C -0.593 4.593 23 H 0.039 0.961 24 C -0.175 4.175 25 N -0.572 5.572 26 Si 0.769 3.231 27 H -0.163 1.163 28 H -0.207 1.207 29 H -0.171 1.171 30 N -0.150 5.150 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.180 0.820 35 H 0.261 0.739 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.088 0.912 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.619 14.860 -13.963 21.151 hybrid contribution 0.740 -0.347 0.579 1.001 sum 6.359 14.514 -13.384 20.742 Atomic orbital electron populations 1.20234 0.83987 1.04204 1.03627 1.22853 0.98732 0.89995 0.98802 1.21462 0.89430 1.00704 1.22442 1.18189 0.89361 0.82756 1.01384 1.42760 1.07636 1.05388 1.72319 1.21078 0.92045 0.80968 0.74900 1.90639 1.28186 1.73911 1.47461 1.23133 0.90941 0.82733 1.01985 0.85545 1.88298 1.53488 1.16340 1.71166 1.22963 0.90438 0.94437 0.94677 1.22661 1.00110 0.92799 1.00465 0.85534 1.22152 0.89010 1.04188 0.85651 1.88115 1.52732 1.29128 1.61338 1.22573 0.98886 0.84058 0.95605 1.21962 0.98692 1.02289 0.96787 1.22736 0.96829 1.01090 0.91638 0.84312 1.48826 1.06147 1.02528 1.57342 1.19778 0.80484 0.90729 0.97126 1.21217 1.14088 1.33100 0.90938 0.96119 1.25838 0.97583 0.95062 0.99000 1.70040 1.27801 1.37779 1.21611 0.85716 0.79587 0.78960 0.78809 1.16315 1.20728 1.17053 1.77310 0.86277 1.23296 1.28151 0.89977 0.88641 0.90258 0.82022 0.73853 0.88964 0.91775 0.86743 0.90427 0.88534 0.90537 0.92867 0.91290 0.92983 0.91215 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.77 10.44 71.23 0.74 -1.03 16 2 C 0.06 2.47 7.21 43.07 0.31 2.78 16 3 C -0.31 -12.77 9.58 22.14 0.21 -12.55 16 4 C 0.31 12.64 7.66 131.32 1.01 13.65 16 5 N -0.63 -20.89 5.30 -308.56 -1.64 -22.52 16 6 C 0.52 16.62 5.31 87.66 0.47 17.08 16 7 O -0.53 -20.80 13.67 15.31 0.21 -20.59 16 8 C 0.07 1.67 3.53 30.79 0.11 1.78 16 9 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 10 O -0.37 -9.86 10.21 -130.42 -1.33 -11.19 16 11 C 0.05 0.90 6.79 72.14 0.49 1.39 16 12 C -0.14 -1.70 2.98 -10.80 -0.03 -1.73 16 13 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 14 C 0.07 0.71 6.10 71.36 0.44 1.14 16 15 O -0.39 -6.87 10.58 -148.98 -1.58 -8.44 16 16 C 0.07 1.05 6.83 71.90 0.49 1.54 16 17 C -0.16 -3.21 4.11 30.08 0.12 -3.09 16 18 C -0.10 -1.67 3.53 -9.83 -0.03 -1.71 16 19 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 20 N -0.36 -16.55 3.60 -348.70 -1.26 -17.81 16 21 C 0.24 10.78 5.07 85.63 0.43 11.21 16 22 C -0.56 -30.54 9.94 25.60 0.25 -30.29 16 23 H 0.02 1.35 8.06 -2.91 -0.02 1.32 16 24 C 0.03 1.36 5.47 84.66 0.46 1.83 16 25 N -0.93 -54.71 13.96 21.45 0.30 -54.41 16 26 Si 0.95 37.85 27.47 68.60 1.88 39.73 16 27 H -0.24 -8.36 7.11 99.48 0.71 -7.65 16 28 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 29 H -0.25 -9.18 6.54 99.48 0.65 -8.53 16 30 N -0.33 -15.07 12.56 -47.45 -0.60 -15.67 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.16 6.69 5.83 -2.91 -0.02 6.67 16 35 H 0.42 11.95 7.96 -92.71 -0.74 11.21 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.28 7.71 -2.39 -0.02 1.26 16 38 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.08 0.56 8.13 -2.38 -0.02 0.54 16 40 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.08 0.92 8.11 -2.39 -0.02 0.90 16 42 H 0.05 1.43 6.93 -2.39 -0.02 1.42 16 43 H 0.07 1.53 7.69 -2.39 -0.02 1.51 16 44 H 0.05 2.37 7.20 -2.38 -0.02 2.36 16 45 H 0.07 2.62 6.93 -2.38 -0.02 2.61 16 46 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -79.04 368.81 1.68 -77.36 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.21 Total: 31.56 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 5.47 Total: 2.00 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -3.19 Total: -110.42 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -2.70 Total: -40.22 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 1.88 Total: 39.73 kcal Total: -79.04 1.68 -77.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570607736.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.676 kcal (2) G-P(sol) polarization free energy of solvation -79.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds