Wall clock time and date at job start Tue Mar 31 2020 18:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39757 * 125.84184 * 2 1 4 4 C 1.36108 * 107.82923 * 180.14280 * 3 2 1 5 5 N 1.39480 * 126.21730 * 179.90622 * 4 3 2 6 6 C 1.34773 * 119.99781 * 359.68522 * 5 4 3 7 7 O 1.21291 * 120.00299 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00034 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.80007 * 304.21201 * 8 6 5 10 10 O 1.43168 * 109.78489 * 183.42569 * 8 6 5 11 11 C 1.43795 * 109.01606 * 221.72874 * 10 8 6 12 12 C 1.53390 * 104.82652 * 30.60391 * 11 10 8 13 13 H 1.09005 * 106.05308 * 82.49465 * 12 11 10 14 14 C 1.49338 * 113.83055 * 199.97567 * 12 11 10 15 15 O 1.41384 * 115.87971 * 94.26501 * 14 12 11 16 16 C 1.42769 * 115.01435 * 45.57027 * 15 14 12 17 17 C 1.53461 * 108.49230 * 297.05324 * 16 15 14 18 18 C 1.52481 * 104.72059 * 329.72611 * 12 11 10 19 19 H 1.08996 * 111.06445 * 138.29857 * 18 12 11 20 20 N 1.35261 * 107.56562 * 359.63389 * 4 3 2 21 21 C 1.46505 * 126.04704 * 180.22999 * 20 4 3 22 22 C 1.50695 * 109.47004 * 89.99963 * 21 20 4 23 23 H 1.07994 * 120.00529 * 0.02562 * 22 21 20 24 24 C 1.37885 * 119.99966 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99707 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99934 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47224 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47180 * 120.00310 * 26 24 22 29 29 H 1.48506 * 109.46994 * 239.99667 * 26 24 22 30 30 N 1.30851 * 125.83719 * 179.73486 * 2 1 3 31 31 H 1.08993 * 109.47029 * 270.24303 * 1 2 3 32 32 H 1.09007 * 109.46604 * 30.23970 * 1 2 3 33 33 H 1.08994 * 109.47104 * 150.23857 * 1 2 3 34 34 H 1.07999 * 126.08835 * 0.02562 * 3 2 1 35 35 H 0.96999 * 119.99913 * 179.68463 * 5 4 3 36 36 H 1.09002 * 110.36707 * 271.76575 * 11 10 8 37 37 H 1.08999 * 110.36723 * 149.44532 * 11 10 8 38 38 H 1.09001 * 108.19943 * 215.93276 * 14 12 11 39 39 H 1.08999 * 108.19649 * 332.60183 * 14 12 11 40 40 H 1.09006 * 109.77094 * 56.43751 * 16 15 14 41 41 H 1.08994 * 109.77742 * 177.17469 * 16 15 14 42 42 H 1.09003 * 109.03180 * 303.16700 * 17 16 15 43 43 H 1.08993 * 110.11192 * 183.14222 * 17 16 15 44 44 H 1.08999 * 109.47077 * 210.00724 * 21 20 4 45 45 H 1.09005 * 109.47098 * 330.00549 * 21 20 4 46 46 H 0.96992 * 119.99754 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7120 -0.0032 5 7 4.7514 1.5273 -0.0062 6 6 4.6158 2.8682 -0.0124 7 8 3.5098 3.3660 -0.0159 8 6 5.8385 3.7492 -0.0161 9 1 6.4750 3.5011 0.8333 10 8 5.4456 5.1239 0.0580 11 6 6.2606 5.8933 -0.8428 12 6 6.6004 4.9286 -1.9859 13 1 5.7433 4.9452 -2.6592 14 6 7.7943 5.3367 -2.7850 15 8 9.0261 4.7671 -2.3887 16 6 8.9875 3.3630 -2.1329 17 6 8.0386 3.1089 -0.9540 18 6 6.6240 3.5498 -1.3353 19 1 6.1417 2.8080 -1.9718 20 7 3.6092 -0.6405 0.0031 21 6 4.7870 -1.5118 0.0071 22 6 5.1908 -1.8039 1.4293 23 1 4.6264 -1.3831 2.2482 24 6 6.2809 -2.6085 1.6850 25 7 6.9686 -3.1206 0.6877 26 14 6.7810 -2.9712 3.4479 27 1 5.8522 -2.2804 4.3780 28 1 6.7239 -4.4357 3.6874 29 1 8.1651 -2.4855 3.6797 30 7 2.2731 -1.0608 0.0049 31 1 -0.3633 0.0044 1.0276 32 1 -0.3633 0.8879 -0.5176 33 1 -0.3633 -0.8921 -0.5101 34 1 1.9904 2.1596 0.0004 35 1 5.6359 1.1293 -0.0037 36 1 7.1706 6.2242 -0.3424 37 1 5.7025 6.7494 -1.2221 38 1 7.6147 5.0690 -3.8263 39 1 7.8869 6.4213 -2.7288 40 1 8.6171 2.8379 -3.0134 41 1 9.9868 3.0059 -1.8841 42 1 8.3785 3.6853 -0.0935 43 1 8.0320 2.0491 -0.6999 44 1 4.5498 -2.4457 -0.5025 45 1 5.6084 -1.0147 -0.5089 46 1 7.7352 -3.6869 0.8676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570607737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:59 Heat of formation + Delta-G solvation = -47.688757 kcal Electronic energy + Delta-G solvation = -29928.774070 eV Core-core repulsion = 25820.252396 eV Total energy + Delta-G solvation = -4108.521674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.40666 -40.62122 -39.01592 -37.77838 -34.85493 -33.91037 -33.53256 -32.53514 -32.08026 -29.79471 -29.02043 -27.86005 -26.07197 -25.81099 -24.31266 -23.45657 -22.86075 -21.35256 -19.89233 -19.57329 -19.33162 -17.50716 -17.03786 -16.86664 -16.72149 -16.39066 -15.78898 -15.73044 -15.37262 -15.09702 -14.70357 -14.60691 -14.18671 -13.96932 -13.80593 -13.51612 -13.50510 -12.91430 -12.79649 -12.74637 -12.52799 -12.10490 -12.05607 -11.81525 -11.61461 -11.50914 -11.33708 -11.10577 -11.07596 -10.94938 -10.74680 -10.41272 -10.37271 -10.16816 -9.95323 -9.82790 -9.74866 -9.32196 -8.76753 -7.95079 -7.47616 -6.37936 -4.46253 2.17980 2.56225 3.04275 3.11986 3.21415 3.27301 3.48666 3.54279 3.56445 3.78837 3.92813 4.18454 4.21489 4.33181 4.43943 4.62160 4.74564 4.88751 4.95104 4.95636 5.02690 5.15166 5.25970 5.26478 5.33984 5.38272 5.45446 5.48908 5.58638 5.61416 5.74293 5.86833 6.02821 6.13020 6.15269 6.21656 6.38609 6.52865 6.67320 6.78860 6.94000 7.00303 7.47478 7.54024 7.58760 7.75303 7.88048 8.25340 8.58506 8.67548 9.21728 10.69158 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009165 B = 0.004198 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.451619 B = 6667.802682 C = 8790.924694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.295 4.295 4 C 0.301 3.699 5 N -0.637 5.637 6 C 0.513 3.487 7 O -0.494 6.494 8 C 0.075 3.925 9 H 0.107 0.893 10 O -0.344 6.344 11 C 0.059 3.941 12 C -0.155 4.155 13 H 0.086 0.914 14 C 0.082 3.918 15 O -0.376 6.376 16 C 0.061 3.939 17 C -0.157 4.157 18 C -0.103 4.103 19 H 0.099 0.901 20 N -0.344 5.344 21 C 0.257 3.743 22 C -0.540 4.540 23 H 0.065 0.935 24 C 0.068 3.932 25 N -0.890 5.890 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.280 1.280 30 N -0.285 5.285 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.161 0.839 35 H 0.415 0.585 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.183 15.685 -6.764 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.327 4.327 4 C 0.079 3.921 5 N -0.286 5.286 6 C 0.298 3.702 7 O -0.366 6.366 8 C 0.013 3.987 9 H 0.124 0.876 10 O -0.262 6.262 11 C -0.017 4.017 12 C -0.174 4.174 13 H 0.105 0.895 14 C 0.005 3.995 15 O -0.294 6.294 16 C -0.015 4.015 17 C -0.195 4.195 18 C -0.122 4.122 19 H 0.117 0.883 20 N -0.130 5.130 21 C 0.139 3.861 22 C -0.578 4.578 23 H 0.084 0.916 24 C -0.136 4.136 25 N -0.528 5.528 26 Si 0.732 3.268 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.206 1.206 30 N -0.110 5.110 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.252 0.748 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.073 0.927 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.722 14.823 -6.667 16.480 hybrid contribution 0.812 -0.063 0.848 1.176 sum 3.535 14.760 -5.819 16.255 Atomic orbital electron populations 1.20022 0.87555 1.02330 1.02198 1.22030 0.96533 0.90999 1.01787 1.21279 0.89100 1.00470 1.21823 1.17896 0.87891 0.83334 1.02957 1.42673 1.08320 1.05313 1.72303 1.20534 0.91338 0.81411 0.76927 1.90653 1.26361 1.73537 1.46003 1.22859 0.92581 0.83898 0.99331 0.87597 1.88625 1.59453 1.15430 1.62651 1.23326 0.95284 0.94407 0.88710 1.21831 1.00827 0.95105 0.99635 0.89521 1.21196 0.83111 0.98862 0.96373 1.87625 1.30273 1.22776 1.88748 1.22635 1.00583 0.81683 0.96595 1.22443 0.93523 1.03490 0.99994 1.22135 0.96973 0.97738 0.95329 0.88259 1.49352 1.06555 1.02096 1.54955 1.19621 0.77796 0.89760 0.98946 1.21388 1.13212 1.31883 0.91348 0.91632 1.24929 0.95680 0.94822 0.98189 1.69922 1.19156 1.32616 1.31074 0.86315 0.78360 0.78490 0.83660 1.19533 1.20503 1.20605 1.77357 0.86108 1.21765 1.25762 0.91275 0.91141 0.91534 0.82195 0.74846 0.91494 0.88583 0.93243 0.88808 0.92668 0.87940 0.90084 0.89156 0.92525 0.93914 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.04 7.21 -82.44 -0.59 0.45 16 3 C -0.29 -6.13 9.58 -39.78 -0.38 -6.51 16 4 C 0.30 6.35 7.66 -153.15 -1.17 5.18 16 5 N -0.64 -11.02 5.39 -11.46 -0.06 -11.08 16 6 C 0.51 8.39 6.94 -10.99 -0.08 8.31 16 7 O -0.49 -9.66 13.65 -14.14 -0.19 -9.85 16 8 C 0.07 0.94 3.47 -26.93 -0.09 0.84 16 9 H 0.11 1.18 7.30 -51.93 -0.38 0.80 16 10 O -0.34 -4.64 10.60 -54.92 -0.58 -5.22 16 11 C 0.06 0.55 7.12 37.36 0.27 0.82 16 12 C -0.15 -1.36 2.71 -92.49 -0.25 -1.61 16 13 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 14 C 0.08 0.63 6.43 35.35 0.23 0.86 16 15 O -0.38 -3.58 10.71 -35.10 -0.38 -3.95 16 16 C 0.06 0.52 6.86 37.40 0.26 0.77 16 17 C -0.16 -1.38 5.32 -26.49 -0.14 -1.52 16 18 C -0.10 -1.03 2.98 -89.93 -0.27 -1.30 16 19 H 0.10 1.04 7.73 -51.93 -0.40 0.64 16 20 N -0.34 -8.00 3.60 -61.57 -0.22 -8.22 16 21 C 0.26 6.28 6.01 -5.19 -0.03 6.25 16 22 C -0.54 -14.26 9.39 -34.44 -0.32 -14.58 16 23 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 24 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 25 N -0.89 -23.72 13.29 55.43 0.74 -22.98 16 26 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 30 N -0.28 -6.63 12.56 33.65 0.42 -6.20 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.16 3.29 5.83 -52.49 -0.31 2.98 16 35 H 0.42 6.47 7.96 -40.82 -0.33 6.15 16 36 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.58 7.86 -51.93 -0.41 0.17 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.70 7.67 -51.93 -0.40 0.30 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 46 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -32.59 375.70 -8.74 -41.33 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.80 Total: 6.13 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.30 Total: -0.94 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.88 Total: -48.49 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -1.15 Total: -19.02 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.59 -8.74 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570607737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.363 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds