Wall clock time and date at job start Tue Mar 31 2020 18:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39757 * 125.84184 * 2 1 4 4 C 1.36108 * 107.82923 * 180.14280 * 3 2 1 5 5 N 1.39480 * 126.21730 * 179.90622 * 4 3 2 6 6 C 1.34773 * 119.99781 * 359.68522 * 5 4 3 7 7 O 1.21291 * 120.00299 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00034 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.80007 * 304.21201 * 8 6 5 10 10 O 1.43168 * 109.78489 * 183.42569 * 8 6 5 11 11 C 1.43795 * 109.01606 * 221.72874 * 10 8 6 12 12 C 1.53390 * 104.82652 * 30.60391 * 11 10 8 13 13 H 1.09005 * 106.05308 * 82.49465 * 12 11 10 14 14 C 1.49338 * 113.83055 * 199.97567 * 12 11 10 15 15 O 1.41384 * 115.87971 * 94.26501 * 14 12 11 16 16 C 1.42769 * 115.01435 * 45.57027 * 15 14 12 17 17 C 1.53461 * 108.49230 * 297.05324 * 16 15 14 18 18 C 1.52481 * 104.72059 * 329.72611 * 12 11 10 19 19 H 1.08996 * 111.06445 * 138.29857 * 18 12 11 20 20 N 1.35261 * 107.56562 * 359.63389 * 4 3 2 21 21 C 1.46505 * 126.04704 * 180.22999 * 20 4 3 22 22 C 1.50695 * 109.47004 * 89.99963 * 21 20 4 23 23 H 1.07994 * 120.00529 * 0.02562 * 22 21 20 24 24 C 1.37885 * 119.99966 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99707 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99934 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47224 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47180 * 120.00310 * 26 24 22 29 29 H 1.48506 * 109.46994 * 239.99667 * 26 24 22 30 30 N 1.30851 * 125.83719 * 179.73486 * 2 1 3 31 31 H 1.08993 * 109.47029 * 270.24303 * 1 2 3 32 32 H 1.09007 * 109.46604 * 30.23970 * 1 2 3 33 33 H 1.08994 * 109.47104 * 150.23857 * 1 2 3 34 34 H 1.07999 * 126.08835 * 0.02562 * 3 2 1 35 35 H 0.96999 * 119.99913 * 179.68463 * 5 4 3 36 36 H 1.09002 * 110.36707 * 271.76575 * 11 10 8 37 37 H 1.08999 * 110.36723 * 149.44532 * 11 10 8 38 38 H 1.09001 * 108.19943 * 215.93276 * 14 12 11 39 39 H 1.08999 * 108.19649 * 332.60183 * 14 12 11 40 40 H 1.09006 * 109.77094 * 56.43751 * 16 15 14 41 41 H 1.08994 * 109.77742 * 177.17469 * 16 15 14 42 42 H 1.09003 * 109.03180 * 303.16700 * 17 16 15 43 43 H 1.08993 * 110.11192 * 183.14222 * 17 16 15 44 44 H 1.08999 * 109.47077 * 210.00724 * 21 20 4 45 45 H 1.09005 * 109.47098 * 330.00549 * 21 20 4 46 46 H 0.96992 * 119.99754 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7120 -0.0032 5 7 4.7514 1.5273 -0.0062 6 6 4.6158 2.8682 -0.0124 7 8 3.5098 3.3660 -0.0159 8 6 5.8385 3.7492 -0.0161 9 1 6.4750 3.5011 0.8333 10 8 5.4456 5.1239 0.0580 11 6 6.2606 5.8933 -0.8428 12 6 6.6004 4.9286 -1.9859 13 1 5.7433 4.9452 -2.6592 14 6 7.7943 5.3367 -2.7850 15 8 9.0261 4.7671 -2.3887 16 6 8.9875 3.3630 -2.1329 17 6 8.0386 3.1089 -0.9540 18 6 6.6240 3.5498 -1.3353 19 1 6.1417 2.8080 -1.9718 20 7 3.6092 -0.6405 0.0031 21 6 4.7870 -1.5118 0.0071 22 6 5.1908 -1.8039 1.4293 23 1 4.6264 -1.3831 2.2482 24 6 6.2809 -2.6085 1.6850 25 7 6.9686 -3.1206 0.6877 26 14 6.7810 -2.9712 3.4479 27 1 5.8522 -2.2804 4.3780 28 1 6.7239 -4.4357 3.6874 29 1 8.1651 -2.4855 3.6797 30 7 2.2731 -1.0608 0.0049 31 1 -0.3633 0.0044 1.0276 32 1 -0.3633 0.8879 -0.5176 33 1 -0.3633 -0.8921 -0.5101 34 1 1.9904 2.1596 0.0004 35 1 5.6359 1.1293 -0.0037 36 1 7.1706 6.2242 -0.3424 37 1 5.7025 6.7494 -1.2221 38 1 7.6147 5.0690 -3.8263 39 1 7.8869 6.4213 -2.7288 40 1 8.6171 2.8379 -3.0134 41 1 9.9868 3.0059 -1.8841 42 1 8.3785 3.6853 -0.0935 43 1 8.0320 2.0491 -0.6999 44 1 4.5498 -2.4457 -0.5025 45 1 5.6084 -1.0147 -0.5089 46 1 7.7352 -3.6869 0.8676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570607737.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:59 Heat of formation + Delta-G solvation = -68.549385 kcal Electronic energy + Delta-G solvation = -29929.678654 eV Core-core repulsion = 25820.252396 eV Total energy + Delta-G solvation = -4109.426258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.63971 -41.89442 -40.24234 -38.67509 -36.36715 -35.67003 -34.49445 -33.83098 -33.25013 -31.08995 -30.47668 -29.22348 -27.83082 -26.51991 -25.30496 -24.72636 -24.16326 -22.68349 -21.36117 -20.83525 -20.34908 -18.93033 -18.69646 -18.13528 -17.69287 -17.54454 -16.84485 -16.73428 -16.53563 -16.29372 -16.17868 -15.80209 -15.67909 -15.21336 -14.78855 -14.60213 -14.47402 -14.30734 -14.29055 -14.06572 -13.67328 -13.49452 -13.40335 -13.15015 -12.91494 -12.75475 -12.72167 -12.33912 -12.28136 -12.15214 -11.96503 -11.79911 -11.70699 -11.68980 -11.36191 -10.96412 -10.76616 -10.72285 -10.43729 -9.67088 -9.12682 -8.37463 -6.54436 0.69497 1.15908 1.34511 1.38448 1.49275 1.54204 1.98410 2.05297 2.33173 2.72418 2.90922 2.93185 3.10533 3.24838 3.49081 3.58033 3.79742 3.87930 3.96176 4.08126 4.19756 4.24499 4.31716 4.47004 4.56658 4.60303 4.64983 4.66279 4.68977 4.79047 4.81089 4.82619 4.83405 4.87493 4.90202 4.92797 5.08663 5.16571 5.17972 5.20369 5.50570 5.68017 5.75739 5.92052 6.07930 6.23438 6.31304 6.55734 6.85807 6.98178 7.17715 8.69187 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009165 B = 0.004198 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.451619 B = 6667.802682 C = 8790.924694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.309 4.309 4 C 0.300 3.700 5 N -0.632 5.632 6 C 0.513 3.487 7 O -0.527 6.527 8 C 0.082 3.918 9 H 0.123 0.877 10 O -0.372 6.372 11 C 0.055 3.945 12 C -0.148 4.148 13 H 0.084 0.916 14 C 0.081 3.919 15 O -0.388 6.388 16 C 0.060 3.940 17 C -0.154 4.154 18 C -0.099 4.099 19 H 0.091 0.909 20 N -0.364 5.364 21 C 0.272 3.728 22 C -0.556 4.556 23 H 0.045 0.955 24 C 0.032 3.968 25 N -0.911 5.911 26 Si 0.966 3.034 27 H -0.279 1.279 28 H -0.276 1.276 29 H -0.263 1.263 30 N -0.328 5.328 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.164 0.836 35 H 0.422 0.578 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.113 0.887 40 H 0.057 0.943 41 H 0.114 0.886 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.028 0.972 45 H 0.051 0.949 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 16.918 -6.568 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.341 4.341 4 C 0.077 3.923 5 N -0.281 5.281 6 C 0.300 3.700 7 O -0.401 6.401 8 C 0.021 3.979 9 H 0.140 0.860 10 O -0.290 6.290 11 C -0.021 4.021 12 C -0.167 4.167 13 H 0.103 0.897 14 C 0.004 3.996 15 O -0.307 6.307 16 C -0.016 4.016 17 C -0.191 4.191 18 C -0.118 4.118 19 H 0.110 0.890 20 N -0.150 5.150 21 C 0.153 3.847 22 C -0.594 4.594 23 H 0.063 0.937 24 C -0.170 4.170 25 N -0.549 5.549 26 Si 0.790 3.210 27 H -0.204 1.204 28 H -0.202 1.202 29 H -0.187 1.187 30 N -0.153 5.153 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.181 0.819 35 H 0.260 0.740 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.075 0.925 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.688 16.071 -6.489 17.720 hybrid contribution 0.456 -0.375 0.748 0.953 sum 4.145 15.696 -5.741 17.219 Atomic orbital electron populations 1.20228 0.83897 1.04088 1.03727 1.22869 0.98751 0.89952 0.98996 1.21462 0.89263 1.00744 1.22591 1.18260 0.89356 0.82916 1.01761 1.42803 1.07707 1.05507 1.72130 1.21398 0.92302 0.81014 0.75251 1.90620 1.28074 1.73908 1.47458 1.22931 0.90542 0.83107 1.01330 0.85978 1.88597 1.60771 1.15782 1.63828 1.23574 0.95641 0.94445 0.88395 1.21805 1.01444 0.94057 0.99405 0.89737 1.21304 0.82084 0.99880 0.96367 1.87612 1.31083 1.23179 1.88843 1.22710 1.01061 0.81448 0.96401 1.22427 0.92678 1.03566 1.00443 1.22127 0.97217 0.98491 0.93994 0.89044 1.49186 1.06374 1.02694 1.56710 1.19264 0.78557 0.89028 0.97848 1.21412 1.13679 1.32780 0.91564 0.93671 1.25612 0.95334 0.94219 1.01840 1.69981 1.19440 1.32686 1.32755 0.85391 0.78495 0.78178 0.78913 1.20383 1.20167 1.18743 1.77308 0.86429 1.23477 1.28126 0.89704 0.88682 0.90470 0.81890 0.74002 0.90166 0.86970 0.92477 0.86928 0.92471 0.86833 0.89646 0.89100 0.95371 0.93107 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.74 10.44 71.24 0.74 -1.00 16 2 C 0.06 2.41 7.21 43.07 0.31 2.72 16 3 C -0.31 -12.95 9.58 22.14 0.21 -12.74 16 4 C 0.30 12.87 7.66 131.32 1.01 13.88 16 5 N -0.63 -22.11 5.39 -308.56 -1.66 -23.77 16 6 C 0.51 16.79 6.94 87.66 0.61 17.40 16 7 O -0.53 -20.75 13.65 15.76 0.22 -20.54 16 8 C 0.08 1.99 3.47 30.47 0.11 2.09 16 9 H 0.12 2.56 7.30 -2.39 -0.02 2.54 16 10 O -0.37 -9.60 10.60 -130.16 -1.38 -10.98 16 11 C 0.06 0.92 7.12 72.11 0.51 1.44 16 12 C -0.15 -2.34 2.71 -12.00 -0.03 -2.37 16 13 H 0.08 1.38 8.10 -2.38 -0.02 1.36 16 14 C 0.08 1.06 6.43 70.81 0.45 1.51 16 15 O -0.39 -6.53 10.71 -148.51 -1.59 -8.12 16 16 C 0.06 0.90 6.86 72.14 0.49 1.39 16 17 C -0.15 -2.45 5.32 30.75 0.16 -2.29 16 18 C -0.10 -1.87 2.98 -10.35 -0.03 -1.90 16 19 H 0.09 1.88 7.73 -2.39 -0.02 1.86 16 20 N -0.36 -17.42 3.60 -348.70 -1.26 -18.68 16 21 C 0.27 13.73 6.01 85.63 0.51 14.24 16 22 C -0.56 -29.96 9.39 25.60 0.24 -29.72 16 23 H 0.04 2.58 7.81 -2.91 -0.02 2.55 16 24 C 0.03 1.66 5.46 84.66 0.46 2.12 16 25 N -0.91 -48.40 13.29 21.45 0.28 -48.12 16 26 Si 0.97 41.39 29.54 68.60 2.03 43.42 16 27 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 28 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 29 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 30 N -0.33 -15.63 12.56 -47.45 -0.60 -16.23 16 31 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.16 6.74 5.83 -2.91 -0.02 6.72 16 35 H 0.42 13.30 7.96 -92.71 -0.74 12.56 16 36 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 1.06 7.86 -2.39 -0.02 1.04 16 40 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.08 1.30 7.67 -2.39 -0.02 1.29 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.05 2.43 7.50 -2.38 -0.02 2.42 16 46 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -70.54 375.70 2.07 -68.47 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.27 Total: 27.76 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.77 Total: 6.79 kcal Atomic # 7 Polarization: -103.56 SS G_CDS: -3.23 Total: -106.80 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -2.75 Total: -39.64 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -70.54 2.07 -68.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570607737.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.084 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds