Wall clock time and date at job start Tue Mar 31 2020 18:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35454 * 126.77769 * 2 1 4 4 C 1.41373 * 103.98866 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.80454 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.99831 * 245.36021 * 5 4 3 7 7 C 1.54320 * 109.88563 * 124.26417 * 5 4 3 8 8 C 1.55150 * 102.94331 * 218.39229 * 7 5 4 9 9 C 1.54691 * 101.67984 * 35.33391 * 8 7 5 10 10 N 1.47020 * 109.88106 * 6.45250 * 5 4 3 11 11 C 1.34783 * 125.65071 * 298.32049 * 10 5 4 12 12 O 1.21343 * 119.99770 * 0.02562 * 11 10 5 13 13 C 1.49444 * 119.99829 * 179.97438 * 11 10 5 14 14 O 1.21353 * 120.00395 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99750 * 179.72509 * 13 11 10 16 16 C 1.46504 * 119.99858 * 180.27542 * 15 13 11 17 17 C 1.53004 * 109.46932 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.46992 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.46983 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00145 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00374 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99796 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47429 * 89.99359 * 23 21 19 25 25 H 1.48498 * 109.47116 * 209.99875 * 23 21 19 26 26 H 1.48508 * 109.47271 * 329.99443 * 23 21 19 27 27 N 1.30182 * 106.39478 * 0.26362 * 4 3 2 28 28 O 1.20925 * 111.60128 * 359.53146 * 27 4 3 29 29 H 1.09002 * 109.47038 * 89.99930 * 1 2 3 30 30 H 1.09000 * 109.47353 * 210.00035 * 1 2 3 31 31 H 1.08997 * 109.47084 * 330.00152 * 1 2 3 32 32 H 1.08005 * 128.00592 * 359.94196 * 3 2 1 33 33 H 1.09000 * 110.71686 * 336.75646 * 7 5 4 34 34 H 1.08997 * 110.72198 * 99.84945 * 7 5 4 35 35 H 1.08999 * 111.00590 * 153.57783 * 8 7 5 36 36 H 1.09002 * 111.00643 * 277.38757 * 8 7 5 37 37 H 1.09001 * 110.38980 * 204.37037 * 9 8 7 38 38 H 1.08995 * 110.24009 * 82.11079 * 9 8 7 39 39 H 0.97000 * 120.00317 * 0.28447 * 15 13 11 40 40 H 1.08992 * 109.47142 * 300.00148 * 16 15 13 41 41 H 1.08997 * 109.46860 * 60.00391 * 16 15 13 42 42 H 1.08998 * 109.47524 * 300.00356 * 17 16 15 43 43 H 1.09005 * 109.46510 * 60.00408 * 17 16 15 44 44 H 1.08998 * 109.47307 * 300.00526 * 18 17 16 45 45 H 1.08997 * 109.46799 * 60.00313 * 18 17 16 46 46 H 0.96994 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9211 1.3001 0.0014 6 1 5.4592 1.1206 -0.9294 7 6 5.7867 0.8609 1.2011 8 6 6.4350 2.1912 1.6673 9 6 5.2972 3.2046 1.4001 10 7 4.6568 2.7380 0.1569 11 6 3.9511 3.5040 -0.6986 12 8 3.4707 3.0122 -1.6985 13 6 3.7592 4.9586 -0.4149 14 8 4.2392 5.4503 0.5853 15 7 3.0581 5.7258 -1.2731 16 6 2.8751 7.1531 -0.9981 17 6 2.0485 7.7865 -2.1190 18 6 1.8569 9.2770 -1.8315 19 6 1.0421 9.9007 -2.9353 20 1 0.6953 9.2947 -3.7591 21 6 0.7394 11.2452 -2.8933 22 7 0.0280 11.7895 -3.8562 23 14 1.3398 12.2937 -1.4687 24 1 2.6737 12.8580 -1.7970 25 1 0.3793 13.4007 -1.2295 26 1 1.4439 11.4560 -0.2469 27 7 3.4764 -0.7564 -0.0048 28 8 2.3095 -1.0736 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.0345 2.1271 -0.0009 33 1 5.1654 0.4373 1.9903 34 1 6.5480 0.1471 0.8866 35 1 6.6858 2.1531 2.7274 36 1 7.3142 2.4283 1.0683 37 1 5.7050 4.2062 1.2640 38 1 4.5818 3.1938 2.2224 39 1 2.6746 5.3329 -2.0728 40 1 2.3541 7.2763 -0.0488 41 1 3.8486 7.6404 -0.9442 42 1 2.5691 7.6633 -3.0687 43 1 1.0750 7.2990 -2.1724 44 1 1.3360 9.3999 -0.8820 45 1 2.8301 9.7647 -1.7778 46 1 -0.1852 12.7353 -3.8265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804719317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:10 Heat of formation + Delta-G solvation = -8.117471 kcal Electronic energy + Delta-G solvation = -28669.181265 eV Core-core repulsion = 24562.375531 eV Total energy + Delta-G solvation = -4106.805734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.17663 -41.07300 -39.18610 -37.85339 -35.80539 -34.40929 -33.61980 -33.40126 -32.09234 -31.52134 -29.44720 -28.07762 -27.73729 -25.56546 -24.02907 -23.10859 -22.17609 -21.97943 -20.92956 -20.36897 -19.45687 -18.02437 -17.84623 -17.39097 -17.19526 -16.75600 -16.52149 -15.89310 -15.64878 -14.95671 -14.82821 -14.33580 -14.15893 -14.03079 -13.92530 -13.74623 -13.65790 -13.56075 -13.32252 -12.81528 -12.75857 -12.73448 -12.22506 -12.13812 -12.01831 -11.96422 -11.47553 -11.34734 -11.26571 -11.15332 -10.95350 -10.28236 -10.19757 -10.01523 -9.81252 -9.59557 -9.50169 -9.28351 -9.27396 -9.10002 -8.59171 -6.09446 -4.08651 1.20489 1.26650 1.92777 2.03796 2.83501 3.03840 3.26339 3.28022 3.35854 3.38715 3.77666 3.99519 4.07419 4.33568 4.34274 4.40733 4.53973 4.72042 4.81091 4.94536 5.00058 5.06715 5.11096 5.24164 5.30063 5.34290 5.38060 5.43686 5.45226 5.48610 5.51314 5.51720 5.72101 5.75770 5.79652 5.87632 6.11224 6.33907 6.49547 6.69406 6.80869 7.13811 7.16957 7.29432 7.54277 7.71516 7.90376 7.98712 8.46688 8.94559 9.52252 11.03781 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.002304 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.943711 B =12148.441355 C =13341.994117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.033 4.033 3 C -0.207 4.207 4 C 0.015 3.985 5 C 0.217 3.783 6 H 0.101 0.899 7 C -0.119 4.119 8 C -0.136 4.136 9 C 0.097 3.903 10 N -0.587 5.587 11 C 0.520 3.480 12 O -0.509 6.509 13 C 0.504 3.496 14 O -0.520 6.520 15 N -0.690 5.690 16 C 0.112 3.888 17 C -0.115 4.115 18 C -0.010 4.010 19 C -0.523 4.523 20 H 0.072 0.928 21 C 0.067 3.933 22 N -0.902 5.902 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.265 1.265 27 N -0.360 5.360 28 O 0.098 5.902 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.162 0.838 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.412 0.588 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.019 0.981 45 H 0.015 0.985 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.908 -25.601 12.702 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.229 4.229 4 C -0.145 4.145 5 C 0.113 3.887 6 H 0.119 0.881 7 C -0.157 4.157 8 C -0.174 4.174 9 C -0.025 4.025 10 N -0.323 5.323 11 C 0.303 3.697 12 O -0.383 6.383 13 C 0.284 3.716 14 O -0.397 6.397 15 N -0.342 5.342 16 C -0.010 4.010 17 C -0.153 4.153 18 C -0.048 4.048 19 C -0.561 4.561 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.541 5.541 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.189 1.189 27 N -0.065 5.065 28 O 0.031 5.969 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.179 0.821 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.249 0.751 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.037 0.963 45 H 0.033 0.967 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.696 -26.282 12.738 30.773 hybrid contribution -0.355 1.329 0.162 1.385 sum 9.340 -24.953 12.899 29.602 Atomic orbital electron populations 1.20346 0.83813 1.04598 1.04351 1.24477 0.96422 0.85876 1.02900 1.22272 0.91069 1.00804 1.08735 1.23613 0.97206 0.90389 1.03256 1.19745 0.89270 0.78621 1.01077 0.88143 1.22676 0.98687 0.98183 0.96191 1.22860 0.97971 0.93675 1.02854 1.22682 0.94539 1.00018 0.85215 1.48243 1.51926 1.07981 1.24108 1.20102 0.79106 0.87493 0.83007 1.90810 1.47228 1.74207 1.26105 1.19842 0.80604 0.86779 0.84365 1.90715 1.47995 1.74207 1.26778 1.46022 1.52107 1.10716 1.25373 1.21858 1.01295 0.77241 1.00582 1.21746 0.98708 0.98630 0.96239 1.19498 0.96911 0.90537 0.97836 1.21084 1.33088 0.94482 1.07485 0.90942 1.25032 0.94606 0.97959 0.95873 1.69908 1.38788 1.12557 1.32809 0.86774 0.78772 0.80186 0.83539 1.20239 1.21353 1.18910 1.73761 0.97222 1.15446 1.20070 1.84786 1.11162 1.33143 1.67769 0.89208 0.89818 0.88994 0.82068 0.90105 0.88980 0.89056 0.90032 0.87390 0.90712 0.75148 0.91063 0.91058 0.91807 0.91801 0.96250 0.96681 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.45 36.01 0.38 -0.05 16 2 C -0.03 -0.32 7.49 -35.30 -0.26 -0.59 16 3 C -0.21 -2.36 9.12 -39.38 -0.36 -2.72 16 4 C 0.01 0.17 6.10 -82.10 -0.50 -0.33 16 5 C 0.22 2.14 3.40 -68.11 -0.23 1.90 16 6 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 7 C -0.12 -0.81 6.47 -24.90 -0.16 -0.98 16 8 C -0.14 -0.79 7.07 -24.70 -0.17 -0.97 16 9 C 0.10 0.84 6.04 -2.64 -0.02 0.82 16 10 N -0.59 -6.23 2.87 -164.96 -0.47 -6.71 16 11 C 0.52 6.62 6.29 -11.58 -0.07 6.55 16 12 O -0.51 -7.38 15.01 5.50 0.08 -7.29 16 13 C 0.50 6.89 7.86 -11.59 -0.09 6.80 16 14 O -0.52 -7.77 13.78 5.49 0.08 -7.70 16 15 N -0.69 -9.39 5.55 -60.73 -0.34 -9.73 16 16 C 0.11 1.72 5.67 -4.04 -0.02 1.69 16 17 C -0.12 -2.06 5.27 -26.73 -0.14 -2.21 16 18 C -0.01 -0.22 4.04 -27.88 -0.11 -0.34 16 19 C -0.52 -14.48 9.66 -34.44 -0.33 -14.82 16 20 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 21 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 22 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 23 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 27 N -0.36 -4.33 12.07 33.42 0.40 -3.92 16 28 O 0.10 1.09 11.20 17.18 0.19 1.28 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.16 1.89 6.41 -52.48 -0.34 1.56 16 33 H 0.08 0.59 7.84 -51.93 -0.41 0.18 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.11 1.06 6.17 -51.93 -0.32 0.74 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.41 5.20 7.94 -40.82 -0.32 4.87 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 45 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -33.11 380.21 -7.24 -40.35 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.81 Total: 1.45 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.20 Total: -3.41 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.37 Total: -47.02 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.35 Total: -13.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.11 -7.24 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804719317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.231 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds