Wall clock time and date at job start Tue Mar 31 2020 18:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35454 * 126.77769 * 2 1 4 4 C 1.41373 * 103.98866 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.80454 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.99831 * 245.36021 * 5 4 3 7 7 C 1.54320 * 109.88563 * 124.26417 * 5 4 3 8 8 C 1.55150 * 102.94331 * 218.39229 * 7 5 4 9 9 C 1.54691 * 101.67984 * 35.33391 * 8 7 5 10 10 N 1.47020 * 109.88106 * 6.45250 * 5 4 3 11 11 C 1.34783 * 125.65071 * 298.32049 * 10 5 4 12 12 O 1.21343 * 119.99770 * 0.02562 * 11 10 5 13 13 C 1.49444 * 119.99829 * 179.97438 * 11 10 5 14 14 O 1.21353 * 120.00395 * 0.02562 * 13 11 10 15 15 N 1.34777 * 119.99750 * 179.72509 * 13 11 10 16 16 C 1.46504 * 119.99858 * 180.27542 * 15 13 11 17 17 C 1.53004 * 109.46932 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.46992 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.46983 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00145 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00374 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99796 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47429 * 89.99359 * 23 21 19 25 25 H 1.48498 * 109.47116 * 209.99875 * 23 21 19 26 26 H 1.48508 * 109.47271 * 329.99443 * 23 21 19 27 27 N 1.30182 * 106.39478 * 0.26362 * 4 3 2 28 28 O 1.20925 * 111.60128 * 359.53146 * 27 4 3 29 29 H 1.09002 * 109.47038 * 89.99930 * 1 2 3 30 30 H 1.09000 * 109.47353 * 210.00035 * 1 2 3 31 31 H 1.08997 * 109.47084 * 330.00152 * 1 2 3 32 32 H 1.08005 * 128.00592 * 359.94196 * 3 2 1 33 33 H 1.09000 * 110.71686 * 336.75646 * 7 5 4 34 34 H 1.08997 * 110.72198 * 99.84945 * 7 5 4 35 35 H 1.08999 * 111.00590 * 153.57783 * 8 7 5 36 36 H 1.09002 * 111.00643 * 277.38757 * 8 7 5 37 37 H 1.09001 * 110.38980 * 204.37037 * 9 8 7 38 38 H 1.08995 * 110.24009 * 82.11079 * 9 8 7 39 39 H 0.97000 * 120.00317 * 0.28447 * 15 13 11 40 40 H 1.08992 * 109.47142 * 300.00148 * 16 15 13 41 41 H 1.08997 * 109.46860 * 60.00391 * 16 15 13 42 42 H 1.08998 * 109.47524 * 300.00356 * 17 16 15 43 43 H 1.09005 * 109.46510 * 60.00408 * 17 16 15 44 44 H 1.08998 * 109.47307 * 300.00526 * 18 17 16 45 45 H 1.08997 * 109.46799 * 60.00313 * 18 17 16 46 46 H 0.96994 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9211 1.3001 0.0014 6 1 5.4592 1.1206 -0.9294 7 6 5.7867 0.8609 1.2011 8 6 6.4350 2.1912 1.6673 9 6 5.2972 3.2046 1.4001 10 7 4.6568 2.7380 0.1569 11 6 3.9511 3.5040 -0.6986 12 8 3.4707 3.0122 -1.6985 13 6 3.7592 4.9586 -0.4149 14 8 4.2392 5.4503 0.5853 15 7 3.0581 5.7258 -1.2731 16 6 2.8751 7.1531 -0.9981 17 6 2.0485 7.7865 -2.1190 18 6 1.8569 9.2770 -1.8315 19 6 1.0421 9.9007 -2.9353 20 1 0.6953 9.2947 -3.7591 21 6 0.7394 11.2452 -2.8933 22 7 0.0280 11.7895 -3.8562 23 14 1.3398 12.2937 -1.4687 24 1 2.6737 12.8580 -1.7970 25 1 0.3793 13.4007 -1.2295 26 1 1.4439 11.4560 -0.2469 27 7 3.4764 -0.7564 -0.0048 28 8 2.3095 -1.0736 0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 2.0345 2.1271 -0.0009 33 1 5.1654 0.4373 1.9903 34 1 6.5480 0.1471 0.8866 35 1 6.6858 2.1531 2.7274 36 1 7.3142 2.4283 1.0683 37 1 5.7050 4.2062 1.2640 38 1 4.5818 3.1938 2.2224 39 1 2.6746 5.3329 -2.0728 40 1 2.3541 7.2763 -0.0488 41 1 3.8486 7.6404 -0.9442 42 1 2.5691 7.6633 -3.0687 43 1 1.0750 7.2990 -2.1724 44 1 1.3360 9.3999 -0.8820 45 1 2.8301 9.7647 -1.7778 46 1 -0.1852 12.7353 -3.8265 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804719317.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:10 Heat of formation + Delta-G solvation = -30.351111 kcal Electronic energy + Delta-G solvation = -28670.145388 eV Core-core repulsion = 24562.375531 eV Total energy + Delta-G solvation = -4107.769857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.00552 -42.03734 -40.16652 -38.78203 -37.14753 -35.27850 -35.14016 -34.32165 -33.34078 -32.81925 -30.17922 -29.34983 -28.69010 -26.68942 -25.06045 -24.32190 -23.07389 -22.76605 -22.30706 -21.46320 -20.43530 -19.11054 -18.76507 -18.64860 -18.30924 -18.03462 -17.45352 -16.93779 -16.74076 -16.22551 -16.10057 -15.68480 -15.16908 -14.98851 -14.79201 -14.76764 -14.58438 -14.30112 -14.18176 -14.02549 -13.81923 -13.65166 -13.53742 -13.33679 -12.96098 -12.81335 -12.73155 -12.69573 -12.21001 -12.08870 -11.89744 -11.80732 -11.77235 -11.60758 -11.33418 -11.09962 -10.75364 -10.66621 -10.37240 -10.30784 -10.06073 -8.28250 -6.32826 0.22436 0.41526 1.02085 1.15371 1.38945 1.40466 1.52158 1.99270 2.11256 2.30659 2.37743 2.96967 3.07637 3.22423 3.31314 3.52327 3.69805 3.92636 4.01006 4.03612 4.15155 4.17148 4.26988 4.33513 4.44770 4.47407 4.65008 4.70376 4.75485 4.78525 4.79870 4.84537 4.85734 4.86246 4.99581 5.02136 5.06729 5.15153 5.20463 5.22879 5.46339 5.55408 5.65306 5.88384 6.12962 6.28138 6.53268 6.75736 6.83184 7.16789 7.32024 8.88393 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016380 B = 0.002304 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.943711 B =12148.441355 C =13341.994117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.021 4.021 3 C -0.235 4.235 4 C 0.009 3.991 5 C 0.211 3.789 6 H 0.097 0.903 7 C -0.110 4.110 8 C -0.122 4.122 9 C 0.092 3.908 10 N -0.581 5.581 11 C 0.521 3.479 12 O -0.532 6.532 13 C 0.507 3.493 14 O -0.532 6.532 15 N -0.688 5.688 16 C 0.126 3.874 17 C -0.105 4.105 18 C -0.010 4.010 19 C -0.533 4.533 20 H 0.034 0.966 21 C 0.002 3.998 22 N -0.953 5.953 23 Si 0.950 3.050 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.242 1.242 27 N -0.378 5.378 28 O 0.090 5.910 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.154 0.846 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.417 0.583 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.026 0.974 45 H 0.024 0.976 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.182 -26.497 15.079 32.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 C -0.257 4.257 4 C -0.151 4.151 5 C 0.107 3.893 6 H 0.115 0.885 7 C -0.149 4.149 8 C -0.160 4.160 9 C -0.029 4.029 10 N -0.315 5.315 11 C 0.304 3.696 12 O -0.409 6.409 13 C 0.288 3.712 14 O -0.409 6.409 15 N -0.340 5.340 16 C 0.004 3.996 17 C -0.143 4.143 18 C -0.048 4.048 19 C -0.571 4.571 20 H 0.052 0.948 21 C -0.195 4.195 22 N -0.593 5.593 23 Si 0.774 3.226 24 H -0.192 1.192 25 H -0.213 1.213 26 H -0.165 1.165 27 N -0.084 5.084 28 O 0.025 5.975 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.172 0.828 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.983 -27.220 15.139 33.026 hybrid contribution -0.814 1.537 -0.649 1.856 sum 10.170 -25.682 14.490 31.193 Atomic orbital electron populations 1.20566 0.81035 1.06116 1.05388 1.25109 0.97837 0.84988 1.00554 1.22334 0.91630 1.00947 1.10751 1.23901 0.97940 0.90489 1.02748 1.19979 0.89103 0.77862 1.02397 0.88537 1.22679 0.98464 0.98978 0.94733 1.22858 0.96906 0.91703 1.04493 1.22826 0.95458 1.00405 0.84256 1.48327 1.50751 1.08349 1.24081 1.19873 0.79420 0.87129 0.83148 1.90798 1.48494 1.74415 1.27205 1.19965 0.80118 0.87164 0.83975 1.90711 1.48439 1.74569 1.27210 1.45886 1.52268 1.10126 1.25713 1.21554 1.00824 0.77969 0.99293 1.21522 0.99363 0.96104 0.97274 1.19452 0.96240 0.93103 0.96006 1.21480 1.33222 0.94527 1.07850 0.94801 1.26040 0.94834 0.99645 0.98942 1.70070 1.40784 1.13105 1.35369 0.85653 0.78316 0.78258 0.80399 1.19245 1.21275 1.16531 1.73740 0.97760 1.15648 1.21272 1.84756 1.11178 1.33614 1.67907 0.88222 0.87784 0.87966 0.82794 0.90350 0.87266 0.86691 0.89098 0.88420 0.90572 0.74587 0.90742 0.90778 0.91975 0.91845 0.95567 0.95775 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.45 71.24 0.74 0.02 16 2 C -0.02 -0.40 7.49 25.04 0.19 -0.21 16 3 C -0.23 -5.30 9.12 22.40 0.20 -5.09 16 4 C 0.01 0.20 6.10 43.57 0.27 0.46 16 5 C 0.21 3.96 3.40 44.59 0.15 4.11 16 6 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 7 C -0.11 -1.29 6.47 31.78 0.21 -1.08 16 8 C -0.12 -1.10 7.07 31.91 0.23 -0.88 16 9 C 0.09 1.44 6.04 86.78 0.52 1.97 16 10 N -0.58 -11.87 2.87 -794.18 -2.28 -14.15 16 11 C 0.52 13.08 6.29 87.27 0.55 13.63 16 12 O -0.53 -15.47 15.01 -3.23 -0.05 -15.52 16 13 C 0.51 13.42 7.86 87.27 0.69 14.10 16 14 O -0.53 -15.22 13.78 -3.26 -0.04 -15.27 16 15 N -0.69 -18.04 5.55 -464.41 -2.58 -20.61 16 16 C 0.13 3.65 5.67 86.38 0.49 4.14 16 17 C -0.10 -3.66 5.27 30.60 0.16 -3.50 16 18 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 19 C -0.53 -29.88 9.66 25.60 0.25 -29.64 16 20 H 0.03 2.09 7.99 -2.91 -0.02 2.07 16 21 C 0.00 0.12 5.47 84.66 0.46 0.58 16 22 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 23 Si 0.95 43.28 27.47 68.60 1.88 45.16 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 27 N -0.38 -8.92 12.07 -49.55 -0.60 -9.51 16 28 O 0.09 1.95 11.20 71.66 0.80 2.75 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.15 3.66 6.41 -2.91 -0.02 3.64 16 33 H 0.08 0.99 7.84 -2.39 -0.02 0.97 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.10 1.79 6.17 -2.39 -0.01 1.77 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.42 10.28 7.94 -92.71 -0.74 9.54 16 40 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 44 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 45 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 46 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -72.64 380.21 2.88 -69.76 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.21 Total: 18.12 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.23 Total: -1.71 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -5.16 Total: -103.30 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: 0.71 Total: -28.03 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.16 kcal Total: -72.64 2.88 -69.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804719317.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.410 kcal (2) G-P(sol) polarization free energy of solvation -72.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds